Wall clock time and date at job start Mon Mar 30 2020 02:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47358 * 2 1 4 4 N 1.46498 * 109.47470 * 120.00085 * 2 1 3 5 5 N 1.40003 * 126.03101 * 299.97748 * 4 2 1 6 6 C 1.30729 * 108.21597 * 180.02562 * 5 4 2 7 7 C 1.40179 * 108.24171 * 359.97438 * 6 5 4 8 8 C 1.35130 * 107.85887 * 359.97438 * 7 6 5 9 9 C 1.51317 * 110.30647 * 180.02562 * 8 7 6 10 10 C 1.54426 * 104.99655 * 16.90074 * 9 8 7 11 11 C 1.51359 * 141.89413 * 179.97438 * 7 6 5 12 12 H 1.08999 * 110.33446 * 282.06059 * 11 7 6 13 13 C 1.50706 * 110.33116 * 44.18310 * 11 7 6 14 14 H 1.08005 * 119.99758 * 118.54771 * 13 11 7 15 15 C 1.37871 * 120.00102 * 298.54656 * 13 11 7 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47483 * 269.99808 * 17 15 13 19 19 H 1.48499 * 109.47134 * 30.00322 * 17 15 13 20 20 H 1.48507 * 109.46904 * 150.00145 * 17 15 13 21 21 H 1.09004 * 109.47359 * 299.99853 * 1 2 3 22 22 H 1.08996 * 109.47335 * 59.99975 * 1 2 3 23 23 H 1.09003 * 109.47006 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47359 * 240.00147 * 2 1 3 25 25 H 1.08997 * 109.47889 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.47182 * 300.00033 * 3 2 1 27 27 H 1.09000 * 109.47237 * 59.99651 * 3 2 1 28 28 H 1.08001 * 125.88159 * 180.02562 * 6 5 4 29 29 H 1.09000 * 110.33836 * 135.80725 * 9 8 7 30 30 H 1.09008 * 110.33696 * 257.94223 * 9 8 7 31 31 H 1.09002 * 110.93967 * 216.11585 * 10 9 8 32 32 H 1.09005 * 110.91044 * 92.47562 * 10 9 8 33 33 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 7 1.7596 -0.3238 2.5222 6 6 2.3634 -1.1769 3.3075 7 6 3.0270 -2.1167 2.5067 8 6 2.7979 -1.7954 1.2143 9 6 3.4917 -2.7792 0.2976 10 6 3.8209 -3.9946 1.1916 11 6 3.8997 -3.3504 2.5929 12 1 4.9272 -3.0719 2.8265 13 6 3.3651 -4.2981 3.6356 14 1 3.0444 -5.2894 3.3507 15 6 3.2854 -3.8999 4.9531 16 7 3.6754 -2.6927 5.3000 17 14 2.6220 -5.0744 6.2453 18 1 1.1518 -4.9017 6.3633 19 1 2.9259 -6.4722 5.8464 20 1 3.2612 -4.7830 7.5538 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9563 0.8899 28 1 2.3521 -1.1609 4.3873 29 1 2.8268 -3.0745 -0.5141 30 1 4.4069 -2.3432 -0.1031 31 1 4.7774 -4.4362 0.9118 32 1 3.0237 -4.7367 1.1483 33 1 4.0195 -2.0827 4.6288 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261055246.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:56 Heat of formation + Delta-G solvation = 74.056813 kcal Electronic energy + Delta-G solvation = -15224.415683 eV Core-core repulsion = 12865.710919 eV Total energy + Delta-G solvation = -2358.704765 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.65490 -36.22285 -34.62673 -32.67147 -29.47290 -27.18560 -27.17012 -26.97634 -23.36665 -22.18104 -20.54444 -18.91873 -18.59597 -16.60933 -15.93434 -14.80771 -14.25631 -13.78864 -13.72450 -13.38165 -12.78313 -12.47254 -12.33191 -12.10094 -11.85309 -11.74452 -11.27923 -11.18352 -11.07392 -10.74808 -10.65775 -10.19698 -10.08346 -9.85082 -9.44164 -8.59444 -8.33039 -8.24572 -7.04827 -6.24745 -3.96128 2.74581 3.11747 3.49433 3.52076 3.67444 3.97803 4.60964 4.75020 5.07574 5.08488 5.17806 5.45250 5.57648 5.59303 5.66744 5.77500 5.81577 5.83987 5.98872 6.18533 6.25148 6.35257 6.37424 6.54365 6.67864 6.95220 7.10418 7.34718 7.62620 7.83363 7.94898 8.29191 8.52826 8.72234 8.97636 9.76366 11.13930 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.038618 B = 0.009013 C = 0.008113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.870672 B = 3105.869371 C = 3450.576294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.162 3.838 3 C -0.158 4.158 4 N -0.368 5.368 5 N -0.314 5.314 6 C 0.072 3.928 7 C -0.185 4.185 8 C 0.000 4.000 9 C -0.034 4.034 10 C -0.102 4.102 11 C 0.092 3.908 12 H 0.026 0.974 13 C -0.585 4.585 14 H 0.049 0.951 15 C 0.022 3.978 16 N -0.915 5.915 17 Si 1.066 2.934 18 H -0.290 1.290 19 H -0.290 1.290 20 H -0.285 1.285 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.057 0.943 24 H 0.089 0.911 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.192 0.808 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.674 3.692 -10.848 11.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.059 3.941 3 C -0.216 4.216 4 N -0.153 5.153 5 N -0.135 5.135 6 C -0.112 4.112 7 C -0.196 4.196 8 C -0.125 4.125 9 C -0.073 4.073 10 C -0.140 4.140 11 C 0.073 3.927 12 H 0.044 0.956 13 C -0.623 4.623 14 H 0.068 0.932 15 C -0.182 4.182 16 N -0.552 5.552 17 Si 0.895 3.105 18 H -0.217 1.217 19 H -0.216 1.216 20 H -0.211 1.211 21 H 0.087 0.913 22 H 0.085 0.915 23 H 0.077 0.923 24 H 0.107 0.893 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.208 0.792 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.790 4.661 -9.409 11.163 hybrid contribution 0.669 -0.494 -1.605 1.808 sum -3.121 4.166 -11.014 12.182 Atomic orbital electron populations 1.22109 0.94238 1.02623 1.02637 1.21020 0.94910 0.93450 0.84709 1.22106 1.01555 0.95219 1.02671 1.47966 1.41026 1.21517 1.04753 1.77191 1.25767 1.24805 0.85724 1.24046 0.94709 0.91948 1.00540 1.21738 1.05986 1.00997 0.90882 1.21763 0.99247 0.92051 0.99415 1.20607 0.97502 0.93398 0.95835 1.22364 1.00378 0.95392 0.95906 1.17941 0.93360 0.89221 0.92212 0.95574 1.22002 1.46200 1.00125 0.93967 0.93248 1.25683 0.95326 0.98868 0.98317 1.70722 1.39579 1.06475 1.38447 0.83583 0.76345 0.74690 0.75833 1.21660 1.21641 1.21071 0.91269 0.91549 0.92341 0.89307 0.92407 0.91537 0.91261 0.79198 0.92400 0.91303 0.92053 0.91564 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.45 37.15 0.35 -1.77 16 2 C 0.16 2.42 3.69 -67.94 -0.25 2.17 16 3 C -0.16 -2.06 9.45 37.16 0.35 -1.71 16 4 N -0.37 -7.43 3.28 -50.47 -0.17 -7.59 16 5 N -0.31 -7.21 12.42 30.67 0.38 -6.83 16 6 C 0.07 1.83 10.61 -17.29 -0.18 1.64 16 7 C -0.18 -4.62 5.26 -104.68 -0.55 -5.17 16 8 C 0.00 0.00 7.53 -81.90 -0.62 -0.61 16 9 C -0.03 -0.61 6.78 -26.83 -0.18 -0.80 16 10 C -0.10 -2.08 6.61 -25.23 -0.17 -2.25 16 11 C 0.09 2.33 2.50 -91.85 -0.23 2.10 16 12 H 0.03 0.71 8.04 -51.93 -0.42 0.29 16 13 C -0.58 -16.34 8.53 -34.44 -0.29 -16.63 16 14 H 0.05 1.37 7.63 -52.48 -0.40 0.97 16 15 C 0.02 0.62 5.28 -17.82 -0.09 0.53 16 16 N -0.91 -26.83 11.84 55.43 0.66 -26.18 16 17 Si 1.07 25.23 29.90 -169.99 -5.08 20.14 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 22 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.09 1.16 8.07 -51.93 -0.42 0.74 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.19 5.04 6.25 -52.49 -0.33 4.71 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.37 7.79 -51.93 -0.40 0.96 16 33 H 0.28 8.13 5.14 -40.82 -0.21 7.93 16 LS Contribution 270.66 15.07 4.08 4.08 Total: -1.00 -31.00 270.66 -6.78 -37.78 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -4.78 Total: 1.10 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -1.87 Total: -22.50 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.87 Total: -40.60 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.08 Total: 20.14 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.00 -6.78 -37.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055246.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.834 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds