Wall clock time and date at job start Mon Mar 30 2020 02:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47358 * 2 1 4 4 N 1.46498 * 109.47470 * 120.00085 * 2 1 3 5 5 N 1.40003 * 126.03101 * 299.97748 * 4 2 1 6 6 C 1.30729 * 108.21597 * 180.02562 * 5 4 2 7 7 C 1.40179 * 108.24171 * 359.97438 * 6 5 4 8 8 C 1.35130 * 107.85887 * 359.97438 * 7 6 5 9 9 C 1.51317 * 110.30647 * 180.02562 * 8 7 6 10 10 C 1.54426 * 104.99655 * 16.90074 * 9 8 7 11 11 C 1.51359 * 141.89413 * 179.97438 * 7 6 5 12 12 H 1.08999 * 110.33446 * 282.06059 * 11 7 6 13 13 C 1.50706 * 110.33116 * 44.18310 * 11 7 6 14 14 H 1.08005 * 119.99758 * 118.54771 * 13 11 7 15 15 C 1.37871 * 120.00102 * 298.54656 * 13 11 7 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47483 * 269.99808 * 17 15 13 19 19 H 1.48499 * 109.47134 * 30.00322 * 17 15 13 20 20 H 1.48507 * 109.46904 * 150.00145 * 17 15 13 21 21 H 1.09004 * 109.47359 * 299.99853 * 1 2 3 22 22 H 1.08996 * 109.47335 * 59.99975 * 1 2 3 23 23 H 1.09003 * 109.47006 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47359 * 240.00147 * 2 1 3 25 25 H 1.08997 * 109.47889 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.47182 * 300.00033 * 3 2 1 27 27 H 1.09000 * 109.47237 * 59.99651 * 3 2 1 28 28 H 1.08001 * 125.88159 * 180.02562 * 6 5 4 29 29 H 1.09000 * 110.33836 * 135.80725 * 9 8 7 30 30 H 1.09008 * 110.33696 * 257.94223 * 9 8 7 31 31 H 1.09002 * 110.93967 * 216.11585 * 10 9 8 32 32 H 1.09005 * 110.91044 * 92.47562 * 10 9 8 33 33 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 7 1.7596 -0.3238 2.5222 6 6 2.3634 -1.1769 3.3075 7 6 3.0270 -2.1167 2.5067 8 6 2.7979 -1.7954 1.2143 9 6 3.4917 -2.7792 0.2976 10 6 3.8209 -3.9946 1.1916 11 6 3.8997 -3.3504 2.5929 12 1 4.9272 -3.0719 2.8265 13 6 3.3651 -4.2981 3.6356 14 1 3.0444 -5.2894 3.3507 15 6 3.2854 -3.8999 4.9531 16 7 3.6754 -2.6927 5.3000 17 14 2.6220 -5.0744 6.2453 18 1 1.1518 -4.9017 6.3633 19 1 2.9259 -6.4722 5.8464 20 1 3.2612 -4.7830 7.5538 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9563 0.8899 28 1 2.3521 -1.1609 4.3873 29 1 2.8268 -3.0745 -0.5141 30 1 4.4069 -2.3432 -0.1031 31 1 4.7774 -4.4362 0.9118 32 1 3.0237 -4.7367 1.1483 33 1 4.0195 -2.0827 4.6288 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261055246.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:56 Heat of formation + Delta-G solvation = 55.609913 kcal Electronic energy + Delta-G solvation = -15225.215601 eV Core-core repulsion = 12865.710919 eV Total energy + Delta-G solvation = -2359.504682 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.36164 -37.81100 -36.06006 -34.66503 -31.12244 -28.93696 -28.74530 -28.22361 -25.33668 -23.67205 -22.23408 -20.67030 -20.17296 -18.50949 -17.52746 -16.41001 -15.65191 -15.45699 -15.26774 -15.08113 -14.58610 -13.91981 -13.78213 -13.54166 -13.15953 -13.10234 -13.03975 -12.66189 -12.47099 -12.34725 -12.23006 -11.92362 -11.80748 -11.63389 -11.19763 -10.60226 -10.38919 -9.97813 -8.84224 -8.46656 -6.18176 1.03602 1.55033 1.58853 1.65849 1.80310 2.08854 2.64020 3.32287 3.50017 3.65060 3.96860 4.04917 4.08129 4.25618 4.33571 4.59053 4.63905 4.65608 4.77034 4.77792 4.81836 4.90687 5.02989 5.15337 5.19789 5.30463 5.40676 5.47093 5.71913 5.93609 6.16378 6.33898 6.45239 6.78430 6.93868 7.62482 8.92099 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.038618 B = 0.009013 C = 0.008113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.870672 B = 3105.869371 C = 3450.576294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.144 3.856 3 C -0.151 4.151 4 N -0.354 5.354 5 N -0.323 5.323 6 C 0.044 3.956 7 C -0.236 4.236 8 C 0.018 3.982 9 C -0.023 4.023 10 C -0.096 4.096 11 C 0.081 3.919 12 H -0.006 1.006 13 C -0.601 4.601 14 H 0.045 0.955 15 C -0.028 4.028 16 N -0.935 5.935 17 Si 1.111 2.889 18 H -0.284 1.284 19 H -0.271 1.271 20 H -0.284 1.284 21 H 0.047 0.953 22 H 0.109 0.891 23 H 0.047 0.953 24 H 0.122 0.878 25 H 0.049 0.951 26 H 0.109 0.891 27 H 0.047 0.953 28 H 0.164 0.836 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.315 3.540 -13.893 14.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.044 3.956 3 C -0.209 4.209 4 N -0.138 5.138 5 N -0.146 5.146 6 C -0.140 4.140 7 C -0.247 4.247 8 C -0.110 4.110 9 C -0.062 4.062 10 C -0.134 4.134 11 C 0.061 3.939 12 H 0.012 0.988 13 C -0.638 4.638 14 H 0.063 0.937 15 C -0.227 4.227 16 N -0.573 5.573 17 Si 0.934 3.066 18 H -0.210 1.210 19 H -0.196 1.196 20 H -0.210 1.210 21 H 0.066 0.934 22 H 0.128 0.872 23 H 0.066 0.934 24 H 0.140 0.860 25 H 0.069 0.931 26 H 0.127 0.873 27 H 0.066 0.934 28 H 0.181 0.819 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.438 4.526 -12.477 13.995 hybrid contribution 0.857 -0.372 -0.754 1.201 sum -3.582 4.154 -13.231 14.323 Atomic orbital electron populations 1.22086 0.92903 1.02291 1.03720 1.21701 0.96105 0.94468 0.83344 1.22079 1.01052 0.94047 1.03726 1.48471 1.39347 1.20919 1.05093 1.77092 1.25768 1.24474 0.87242 1.23725 0.96757 0.93589 0.99912 1.21738 1.08104 1.02091 0.92749 1.22342 0.97658 0.91857 0.99111 1.20703 0.99128 0.91037 0.95372 1.22291 1.01582 0.96215 0.93316 1.17970 0.91536 0.89687 0.94674 0.98772 1.22379 1.45897 1.00470 0.95100 0.93665 1.26996 0.95284 0.99537 1.00882 1.70811 1.41075 1.07211 1.38243 0.83008 0.76003 0.73888 0.73676 1.21022 1.19567 1.21019 0.93418 0.87231 0.93361 0.85975 0.93138 0.87283 0.93391 0.81875 0.88458 0.88360 0.89747 0.92012 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.45 71.98 0.68 -2.90 16 2 C 0.14 3.79 3.69 44.99 0.17 3.95 16 3 C -0.15 -3.47 9.45 71.98 0.68 -2.79 16 4 N -0.35 -13.74 3.28 -313.57 -1.03 -14.77 16 5 N -0.32 -15.14 12.42 -56.87 -0.71 -15.84 16 6 C 0.04 2.30 10.61 85.33 0.91 3.21 16 7 C -0.24 -12.02 5.26 -19.90 -0.10 -12.12 16 8 C 0.02 0.75 7.53 41.52 0.31 1.06 16 9 C -0.02 -0.75 6.78 30.53 0.21 -0.55 16 10 C -0.10 -3.74 6.61 31.56 0.21 -3.53 16 11 C 0.08 4.17 2.50 -11.59 -0.03 4.14 16 12 H -0.01 -0.31 8.04 -2.39 -0.02 -0.33 16 13 C -0.60 -34.40 8.53 25.60 0.22 -34.18 16 14 H 0.05 2.54 7.63 -2.91 -0.02 2.52 16 15 C -0.03 -1.64 5.28 84.65 0.45 -1.20 16 16 N -0.93 -57.51 11.84 21.45 0.25 -57.25 16 17 Si 1.11 51.86 29.90 68.60 2.05 53.91 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 21 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 22 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.12 2.49 8.07 -2.38 -0.02 2.47 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.16 9.36 6.25 -2.91 -0.02 9.34 16 29 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 31 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.06 2.43 7.79 -2.38 -0.02 2.42 16 33 H 0.27 16.66 5.14 -92.71 -0.48 16.19 16 Total: -1.00 -71.29 270.66 5.63 -65.65 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 1.37 Total: 13.19 kcal Atomic # 6 Polarization: -48.59 SS G_CDS: 3.69 Total: -44.89 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -1.48 Total: -87.86 kcal Atomic # 14 Polarization: 51.86 SS G_CDS: 2.05 Total: 53.91 kcal Total: -71.29 5.63 -65.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055246.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.261 kcal (2) G-P(sol) polarization free energy of solvation -71.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds