Wall clock time and date at job start Mon Mar 30 2020 02:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47425 * 2 1 4 4 N 1.46507 * 109.47107 * 120.00369 * 2 1 3 5 5 N 1.39907 * 126.19289 * 296.02148 * 4 2 1 6 6 C 1.31652 * 109.21234 * 180.02562 * 5 4 2 7 7 C 1.38666 * 108.82701 * 359.97438 * 6 5 4 8 8 C 1.37390 * 126.19327 * 116.06378 * 4 2 1 9 9 C 1.40227 * 126.66483 * 359.70730 * 8 4 2 10 10 H 1.08009 * 119.99985 * 336.17050 * 9 8 4 11 11 C 1.40168 * 120.00328 * 156.17660 * 9 8 4 12 12 N 1.30759 * 119.99712 * 342.62585 * 11 9 8 13 13 Si 1.86799 * 120.00151 * 162.62985 * 11 9 8 14 14 H 1.48502 * 109.47423 * 59.99728 * 13 11 9 15 15 H 1.48503 * 109.46852 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47054 * 299.99524 * 13 11 9 17 17 C 1.51238 * 109.86023 * 180.02562 * 7 6 5 18 18 C 1.54367 * 105.12911 * 17.14670 * 17 7 6 19 19 C 1.51478 * 141.61335 * 179.97438 * 6 5 4 20 20 H 1.09001 * 109.47216 * 59.99740 * 1 2 3 21 21 H 1.08995 * 109.47764 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46881 * 300.00216 * 1 2 3 23 23 H 1.09005 * 109.46881 * 239.99784 * 2 1 3 24 24 H 1.09005 * 109.46949 * 179.97438 * 3 2 1 25 25 H 1.08994 * 109.46933 * 299.99974 * 3 2 1 26 26 H 1.09001 * 109.47017 * 60.00444 * 3 2 1 27 27 H 0.97004 * 120.00185 * 180.31463 * 12 11 9 28 28 H 1.09005 * 110.31396 * 136.05940 * 17 7 6 29 29 H 1.09004 * 110.31077 * 258.23214 * 17 7 6 30 30 H 1.09000 * 110.80250 * 91.90235 * 18 17 7 31 31 H 1.09002 * 110.79943 * 215.20182 * 18 17 7 32 32 H 1.09004 * 110.29587 * 281.74426 * 19 6 5 33 33 H 1.09005 * 110.30058 * 43.87946 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 7 1.8267 -0.2841 2.5211 6 6 2.4059 -1.1485 3.3276 7 6 2.9939 -2.1469 2.5658 8 6 2.7481 -1.8546 1.2199 9 6 3.1605 -2.6070 0.1108 10 1 2.6201 -2.5353 -0.8216 11 6 4.2740 -3.4524 0.2122 12 7 5.1234 -3.2996 1.1945 13 14 4.5445 -4.7969 -1.0560 14 1 4.6787 -4.1870 -2.4033 15 1 5.7838 -5.5459 -0.7266 16 1 3.3865 -5.7265 -1.0465 17 6 3.6667 -3.1548 3.4707 18 6 3.0606 -2.9086 4.8689 19 6 2.6480 -1.4232 4.7975 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9562 -0.8899 26 1 1.6768 1.9563 0.8900 27 1 5.8965 -3.8817 1.2622 28 1 3.4476 -4.1689 3.1365 29 1 4.7435 -2.9863 3.4901 30 1 2.1904 -3.5447 5.0310 31 1 3.8061 -3.0694 5.6477 32 1 3.4509 -0.7890 5.1734 33 1 1.7347 -1.2567 5.3688 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261066762.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:07 Heat of formation + Delta-G solvation = 39.024116 kcal Electronic energy + Delta-G solvation = -15298.326880 eV Core-core repulsion = 12938.102984 eV Total energy + Delta-G solvation = -2360.223896 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.27016 -37.44975 -35.53339 -34.91170 -31.29450 -28.91062 -28.42498 -28.11943 -26.19845 -23.51279 -21.45324 -20.91876 -19.25325 -18.34454 -17.20327 -16.38635 -16.03527 -15.31182 -15.10480 -15.01066 -13.95670 -13.71781 -13.54586 -13.48076 -13.26508 -13.04692 -12.91016 -12.82504 -12.39134 -12.25978 -12.00637 -11.86016 -11.70957 -11.59291 -11.46571 -10.99645 -10.34060 -9.46960 -8.60387 -8.42940 -6.36187 1.29756 1.41324 1.52019 1.77660 2.16610 2.34179 2.47266 3.28258 3.63813 3.98812 4.16951 4.24590 4.31670 4.39562 4.65292 4.69993 4.79971 4.84580 4.87108 4.93853 5.07996 5.16821 5.21792 5.22326 5.29286 5.31547 5.65897 5.72548 5.80321 5.85808 6.12812 6.58241 6.69900 6.86848 7.29988 7.74107 8.44231 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.019736 B = 0.014475 C = 0.009118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.393308 B = 1933.841691 C = 3070.189396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.159 3.841 3 C -0.139 4.139 4 N -0.423 5.423 5 N -0.386 5.386 6 C 0.018 3.982 7 C -0.362 4.362 8 C 0.247 3.753 9 C -0.499 4.499 10 H 0.076 0.924 11 C 0.049 3.951 12 N -0.803 5.803 13 Si 0.984 3.016 14 H -0.259 1.259 15 H -0.267 1.267 16 H -0.265 1.265 17 C 0.011 3.989 18 C -0.110 4.110 19 C -0.015 4.015 20 H 0.100 0.900 21 H 0.039 0.961 22 H 0.050 0.950 23 H 0.088 0.912 24 H 0.034 0.966 25 H 0.100 0.900 26 H 0.051 0.949 27 H 0.286 0.714 28 H 0.016 0.984 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.431 0.597 -0.575 2.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.057 3.943 3 C -0.197 4.197 4 N -0.211 5.211 5 N -0.209 5.209 6 C -0.144 4.144 7 C -0.374 4.374 8 C 0.127 3.873 9 C -0.535 4.535 10 H 0.094 0.906 11 C -0.170 4.170 12 N -0.428 5.428 13 Si 0.805 3.195 14 H -0.183 1.183 15 H -0.192 1.192 16 H -0.190 1.190 17 C -0.027 4.027 18 C -0.148 4.148 19 C -0.054 4.054 20 H 0.118 0.882 21 H 0.058 0.942 22 H 0.069 0.931 23 H 0.106 0.894 24 H 0.054 0.946 25 H 0.119 0.881 26 H 0.070 0.930 27 H 0.096 0.904 28 H 0.035 0.965 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.974 1.729 -0.609 3.494 hybrid contribution 0.752 -1.227 -0.649 1.579 sum -2.222 0.502 -1.258 2.602 Atomic orbital electron populations 1.22025 0.93535 1.01478 1.03082 1.21093 0.95235 0.93627 0.84340 1.21943 1.00106 0.94607 1.03074 1.49085 1.48720 1.19389 1.03896 1.76436 1.31881 1.24930 0.87640 1.23336 0.97827 0.94946 0.98251 1.20753 1.18826 1.06100 0.91753 1.18371 0.89128 0.85306 0.94500 1.18715 1.13415 1.24109 0.97295 0.90640 1.26540 0.93613 0.98727 0.98119 1.69935 1.08989 1.34096 1.29813 0.85235 0.78401 0.77542 0.78346 1.18311 1.19160 1.18970 1.19765 0.97320 0.94340 0.91322 1.22382 1.00678 0.94628 0.97124 1.20398 1.01167 0.97143 0.86717 0.88163 0.94171 0.93088 0.89444 0.94629 0.88124 0.92967 0.90365 0.96474 0.93576 0.91431 0.88776 0.90266 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.92 9.50 71.98 0.68 -4.24 16 2 C 0.16 6.52 3.67 44.99 0.17 6.69 16 3 C -0.14 -4.93 9.40 71.98 0.68 -4.25 16 4 N -0.42 -21.94 3.35 -318.87 -1.07 -23.01 16 5 N -0.39 -20.49 12.39 -47.11 -0.58 -21.07 16 6 C 0.02 0.94 8.05 42.94 0.35 1.29 16 7 C -0.36 -19.94 5.94 -19.19 -0.11 -20.05 16 8 C 0.25 14.04 6.53 39.16 0.26 14.29 16 9 C -0.50 -27.23 8.78 23.22 0.20 -27.03 16 10 H 0.08 3.90 7.25 -2.91 -0.02 3.88 16 11 C 0.05 2.47 5.34 85.32 0.46 2.93 16 12 N -0.80 -42.05 9.95 21.87 0.22 -41.83 16 13 Si 0.98 38.33 29.60 68.60 2.03 40.36 16 14 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 15 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 16 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 17 C 0.01 0.53 5.15 30.48 0.16 0.69 16 18 C -0.11 -4.06 7.07 31.51 0.22 -3.84 16 19 C -0.02 -0.59 6.77 30.55 0.21 -0.38 16 20 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 21 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 22 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 23 H 0.09 3.57 6.97 -2.38 -0.02 3.55 16 24 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 25 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.29 13.58 8.29 -92.71 -0.77 12.81 16 28 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.05 2.30 7.25 -2.38 -0.02 2.29 16 30 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.08 2.88 8.14 -2.39 -0.02 2.87 16 33 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 Total: -1.00 -66.36 272.11 4.94 -61.42 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 1.08 Total: 18.05 kcal Atomic # 6 Polarization: -37.17 SS G_CDS: 3.26 Total: -33.91 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -1.43 Total: -85.92 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Total: -66.36 4.94 -61.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261066762.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.444 kcal (2) G-P(sol) polarization free energy of solvation -66.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds