Wall clock time and date at job start Mon Mar 30 2020 03:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47162 * 2 1 4 4 N 1.40293 * 126.08621 * 90.02360 * 3 2 1 5 5 C 1.31080 * 108.26509 * 179.97438 * 4 3 2 6 6 C 1.39291 * 108.07589 * 0.26583 * 5 4 3 7 7 C 1.34324 * 126.09112 * 269.99880 * 3 2 1 8 8 C 1.50826 * 128.03444 * 0.19308 * 7 3 2 9 9 C 1.53605 * 108.29950 * 162.77988 * 8 7 3 10 10 H 1.08996 * 109.76393 * 290.23378 * 9 8 7 11 11 C 1.50700 * 109.37949 * 170.11536 * 9 8 7 12 12 H 1.08000 * 119.99780 * 0.28521 * 11 9 8 13 13 C 1.37877 * 119.99844 * 180.28661 * 11 9 8 14 14 N 1.31513 * 119.99977 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 119.99834 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47027 * 89.99856 * 15 13 11 17 17 H 1.48501 * 109.47250 * 210.00032 * 15 13 11 18 18 H 1.48499 * 109.47380 * 330.00053 * 15 13 11 19 19 C 1.53109 * 109.28518 * 50.29082 * 9 8 7 20 20 C 1.50841 * 127.89585 * 179.88203 * 6 5 4 21 21 H 1.08994 * 109.47432 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47151 * 300.00205 * 1 2 3 23 23 H 1.09003 * 109.47300 * 59.99890 * 1 2 3 24 24 H 1.09001 * 109.46715 * 239.99952 * 2 1 3 25 25 H 1.08998 * 109.46860 * 119.99946 * 2 1 3 26 26 H 1.08002 * 125.95780 * 179.97438 * 5 4 3 27 27 H 1.08996 * 109.68280 * 283.14631 * 8 7 3 28 28 H 1.09004 * 109.67958 * 43.69155 * 8 7 3 29 29 H 0.96997 * 119.99544 * 180.02562 * 14 13 11 30 30 H 1.09004 * 109.46433 * 169.46223 * 19 9 8 31 31 H 1.09002 * 109.45890 * 49.48236 * 19 9 8 32 32 H 1.09000 * 109.68602 * 283.08891 * 20 6 5 33 33 H 1.09003 * 109.67944 * 43.60543 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2943 2.1602 1.1338 5 6 2.7106 3.3366 0.7326 6 6 2.7067 3.3445 -0.6603 7 6 2.2822 2.1272 -1.0854 8 6 2.1409 1.7396 -2.5362 9 6 2.1384 3.0230 -3.3803 10 1 1.2148 3.5756 -3.2081 11 6 2.2431 2.6618 -4.8396 12 1 2.3004 1.6250 -5.1365 13 6 2.2657 3.6551 -5.7956 14 7 2.1965 4.9176 -5.4339 15 14 2.3961 3.2075 -7.6045 16 1 1.0343 3.0363 -8.1715 17 1 3.1030 4.2914 -8.3330 18 1 3.1547 1.9389 -7.7471 19 6 3.3346 3.8920 -2.9826 20 6 3.1006 4.4722 -1.5815 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.0011 4.1580 1.3708 27 1 2.9725 1.0981 -2.8274 28 1 1.1993 1.2109 -2.6849 29 1 2.2120 5.6163 -6.1066 30 1 3.4458 4.7065 -3.6985 31 1 4.2398 3.2847 -2.9800 32 1 2.3020 5.2132 -1.6171 33 1 4.0176 4.9379 -1.2204 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261114934.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:28 Heat of formation + Delta-G solvation = 54.723466 kcal Electronic energy + Delta-G solvation = -15060.123446 eV Core-core repulsion = 12700.580325 eV Total energy + Delta-G solvation = -2359.543122 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.87849 -35.94454 -34.28695 -32.24453 -30.44544 -28.79473 -27.86460 -24.86699 -23.57057 -21.89042 -20.55116 -19.96251 -17.69846 -16.66767 -15.69009 -14.85077 -14.57832 -14.43850 -13.58827 -13.28520 -12.81346 -12.65846 -12.44607 -12.07648 -11.95933 -11.87258 -11.18635 -11.15502 -10.90966 -10.83456 -10.53578 -10.21851 -9.66558 -9.58977 -9.26896 -8.76543 -8.69031 -8.29721 -7.50863 -5.99791 -4.07392 2.44473 2.96731 3.29386 3.36677 3.39139 3.42689 4.41759 4.79675 5.12357 5.26452 5.29781 5.40354 5.44159 5.66362 5.76751 5.95537 6.12466 6.18091 6.22986 6.32361 6.53298 6.66215 6.71626 6.77016 7.00457 7.27784 7.30793 7.51497 7.63767 7.75944 7.98519 8.12916 8.28094 8.43224 8.95899 9.57174 11.05366 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.037936 B = 0.008294 C = 0.007097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.909696 B = 3375.113185 C = 3944.136823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.132 3.868 3 N -0.374 5.374 4 N -0.323 5.323 5 C 0.045 3.955 6 C -0.236 4.236 7 C 0.099 3.901 8 C -0.049 4.049 9 C 0.058 3.942 10 H 0.031 0.969 11 C -0.516 4.516 12 H 0.055 0.945 13 C 0.063 3.937 14 N -0.886 5.886 15 Si 0.890 3.110 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.111 4.111 20 C -0.040 4.040 21 H 0.072 0.928 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.174 0.826 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.261 0.739 30 H 0.097 0.903 31 H 0.031 0.969 32 H 0.059 0.941 33 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.535 -5.752 7.859 9.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.010 3.990 3 N -0.157 5.157 4 N -0.144 5.144 5 C -0.140 4.140 6 C -0.247 4.247 7 C -0.029 4.029 8 C -0.088 4.088 9 C 0.039 3.961 10 H 0.049 0.951 11 C -0.554 4.554 12 H 0.073 0.927 13 C -0.139 4.139 14 N -0.525 5.525 15 Si 0.718 3.282 16 H -0.208 1.208 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.149 4.149 20 C -0.078 4.078 21 H 0.091 0.909 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.108 0.892 25 H 0.105 0.895 26 H 0.191 0.809 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.116 0.884 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.844 -6.460 8.810 10.957 hybrid contribution 0.209 0.295 -1.549 1.590 sum -0.636 -6.165 7.261 9.547 Atomic orbital electron populations 1.22178 0.94735 1.02535 1.03305 1.21516 0.95005 0.78773 1.03693 1.48326 1.52010 1.11597 1.03765 1.77310 1.24330 1.04527 1.08276 1.23494 0.99998 0.95549 0.94932 1.20162 1.13913 0.97342 0.93265 1.21507 0.98261 0.91872 0.91238 1.20685 1.00614 1.01832 0.85635 1.18716 0.95405 0.89295 0.92668 0.95103 1.21162 1.50662 0.92828 0.90757 0.92670 1.24944 0.95115 0.95024 0.98805 1.69879 1.50261 0.99007 1.33324 0.86626 0.78092 0.78111 0.85342 1.20760 1.21211 1.19972 1.21709 0.98106 1.01457 0.93651 1.20108 0.98980 0.93879 0.94882 0.90949 0.91965 0.91667 0.89205 0.89469 0.80898 0.91093 0.92134 0.92945 0.88439 0.95055 0.92240 0.93253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.24 37.16 0.38 -1.66 16 2 C 0.13 1.77 7.01 -4.04 -0.03 1.75 16 3 N -0.37 -6.73 3.60 -57.13 -0.21 -6.93 16 4 N -0.32 -6.07 12.59 30.55 0.38 -5.68 16 5 C 0.04 0.81 12.00 -17.48 -0.21 0.60 16 6 C -0.24 -4.74 5.91 -105.05 -0.62 -5.36 16 7 C 0.10 1.97 6.73 -82.33 -0.55 1.41 16 8 C -0.05 -1.00 5.06 -27.51 -0.14 -1.14 16 9 C 0.06 1.42 2.09 -91.40 -0.19 1.23 16 10 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 11 C -0.52 -13.66 8.55 -34.44 -0.29 -13.96 16 12 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 13 C 0.06 1.68 5.26 -17.82 -0.09 1.59 16 14 N -0.89 -24.64 11.30 55.43 0.63 -24.02 16 15 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 C -0.11 -2.61 5.07 -26.44 -0.13 -2.74 16 20 C -0.04 -0.82 6.28 -27.58 -0.17 -0.99 16 21 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.09 1.09 7.90 -51.93 -0.41 0.68 16 25 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.17 2.52 8.06 -52.49 -0.42 2.10 16 27 H 0.07 1.43 8.13 -51.93 -0.42 1.00 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.10 2.53 5.86 -51.93 -0.30 2.23 16 31 H 0.03 0.72 8.11 -51.93 -0.42 0.30 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 271.76 15.07 4.10 4.10 Total: -1.00 -29.26 271.76 -7.08 -36.34 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -4.90 Total: -0.23 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -2.06 Total: -19.28 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.81 Total: -36.63 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.26 -7.08 -36.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261114934.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.066 kcal (2) G-P(sol) polarization free energy of solvation -29.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds