Wall clock time and date at job start Mon Mar 30 2020 03:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47162 * 2 1 4 4 N 1.40293 * 126.08621 * 90.02360 * 3 2 1 5 5 C 1.31080 * 108.26509 * 179.97438 * 4 3 2 6 6 C 1.39291 * 108.07589 * 0.26583 * 5 4 3 7 7 C 1.34324 * 126.09112 * 269.99880 * 3 2 1 8 8 C 1.50826 * 128.03444 * 0.19308 * 7 3 2 9 9 C 1.53605 * 108.29950 * 162.77988 * 8 7 3 10 10 H 1.08996 * 109.76393 * 290.23378 * 9 8 7 11 11 C 1.50700 * 109.37949 * 170.11536 * 9 8 7 12 12 H 1.08000 * 119.99780 * 0.28521 * 11 9 8 13 13 C 1.37877 * 119.99844 * 180.28661 * 11 9 8 14 14 N 1.31513 * 119.99977 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 119.99834 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47027 * 89.99856 * 15 13 11 17 17 H 1.48501 * 109.47250 * 210.00032 * 15 13 11 18 18 H 1.48499 * 109.47380 * 330.00053 * 15 13 11 19 19 C 1.53109 * 109.28518 * 50.29082 * 9 8 7 20 20 C 1.50841 * 127.89585 * 179.88203 * 6 5 4 21 21 H 1.08994 * 109.47432 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47151 * 300.00205 * 1 2 3 23 23 H 1.09003 * 109.47300 * 59.99890 * 1 2 3 24 24 H 1.09001 * 109.46715 * 239.99952 * 2 1 3 25 25 H 1.08998 * 109.46860 * 119.99946 * 2 1 3 26 26 H 1.08002 * 125.95780 * 179.97438 * 5 4 3 27 27 H 1.08996 * 109.68280 * 283.14631 * 8 7 3 28 28 H 1.09004 * 109.67958 * 43.69155 * 8 7 3 29 29 H 0.96997 * 119.99544 * 180.02562 * 14 13 11 30 30 H 1.09004 * 109.46433 * 169.46223 * 19 9 8 31 31 H 1.09002 * 109.45890 * 49.48236 * 19 9 8 32 32 H 1.09000 * 109.68602 * 283.08891 * 20 6 5 33 33 H 1.09003 * 109.67944 * 43.60543 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2943 2.1602 1.1338 5 6 2.7106 3.3366 0.7326 6 6 2.7067 3.3445 -0.6603 7 6 2.2822 2.1272 -1.0854 8 6 2.1409 1.7396 -2.5362 9 6 2.1384 3.0230 -3.3803 10 1 1.2148 3.5756 -3.2081 11 6 2.2431 2.6618 -4.8396 12 1 2.3004 1.6250 -5.1365 13 6 2.2657 3.6551 -5.7956 14 7 2.1965 4.9176 -5.4339 15 14 2.3961 3.2075 -7.6045 16 1 1.0343 3.0363 -8.1715 17 1 3.1030 4.2914 -8.3330 18 1 3.1547 1.9389 -7.7471 19 6 3.3346 3.8920 -2.9826 20 6 3.1006 4.4722 -1.5815 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.0011 4.1580 1.3708 27 1 2.9725 1.0981 -2.8274 28 1 1.1993 1.2109 -2.6849 29 1 2.2120 5.6163 -6.1066 30 1 3.4458 4.7065 -3.6985 31 1 4.2398 3.2847 -2.9800 32 1 2.3020 5.2132 -1.6171 33 1 4.0176 4.9379 -1.2204 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261114934.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:28 Heat of formation + Delta-G solvation = 38.653173 kcal Electronic energy + Delta-G solvation = -15060.820306 eV Core-core repulsion = 12700.580325 eV Total energy + Delta-G solvation = -2360.239982 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.33490 -37.70835 -35.53823 -34.18684 -31.89824 -30.47741 -29.34141 -26.78664 -24.78911 -23.55720 -22.26730 -21.35551 -19.32584 -18.50390 -17.28198 -16.51395 -16.26510 -15.62839 -14.95821 -14.83621 -14.57542 -14.42230 -13.76824 -13.68987 -13.37141 -13.04340 -12.88428 -12.73851 -12.58250 -12.32009 -12.27732 -11.97872 -11.53734 -11.24509 -11.12827 -10.68381 -10.36500 -10.06965 -9.02469 -8.04425 -6.19088 0.98441 1.45063 1.46452 1.55747 1.68172 1.94100 2.46875 3.22660 3.67530 3.88672 4.11536 4.18255 4.26128 4.35337 4.47554 4.55250 4.68646 4.80268 4.82281 4.86048 4.99563 5.07870 5.08374 5.19921 5.31861 5.45310 5.65718 5.73051 5.87981 5.99810 6.14726 6.25033 6.42186 6.84211 6.92032 7.48799 8.99840 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.037936 B = 0.008294 C = 0.007097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.909696 B = 3375.113185 C = 3944.136823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.119 3.881 3 N -0.371 5.371 4 N -0.331 5.331 5 C 0.047 3.953 6 C -0.258 4.258 7 C 0.085 3.915 8 C -0.036 4.036 9 C 0.056 3.944 10 H -0.005 1.005 11 C -0.533 4.533 12 H 0.058 0.942 13 C 0.014 3.986 14 N -0.914 5.914 15 Si 0.953 3.047 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.267 1.267 19 C -0.105 4.105 20 C -0.031 4.031 21 H 0.106 0.894 22 H 0.052 0.948 23 H 0.046 0.954 24 H 0.104 0.896 25 H 0.107 0.893 26 H 0.206 0.794 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.261 0.739 30 H 0.068 0.932 31 H 0.028 0.972 32 H 0.048 0.952 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.375 -7.130 8.437 11.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.001 4.001 3 N -0.153 5.153 4 N -0.153 5.153 5 C -0.137 4.137 6 C -0.269 4.269 7 C -0.044 4.044 8 C -0.075 4.075 9 C 0.037 3.963 10 H 0.013 0.987 11 C -0.571 4.571 12 H 0.076 0.924 13 C -0.185 4.185 14 N -0.553 5.553 15 Si 0.779 3.221 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.191 1.191 19 C -0.143 4.143 20 C -0.069 4.069 21 H 0.125 0.875 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.122 0.878 25 H 0.125 0.875 26 H 0.223 0.777 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.693 -7.868 9.401 12.279 hybrid contribution 0.132 0.700 -1.699 1.842 sum -0.560 -7.168 7.702 10.537 Atomic orbital electron populations 1.22132 0.93652 1.04355 1.01852 1.21962 0.95909 0.76811 1.05426 1.48657 1.51172 1.12732 1.02775 1.77279 1.24414 1.04879 1.08729 1.23928 0.99198 0.96202 0.94325 1.20260 1.15057 0.97292 0.94317 1.21381 0.99056 0.92590 0.91339 1.20411 1.01374 0.99891 0.85795 1.18621 0.93990 0.90897 0.92755 0.98693 1.21531 1.50461 0.93031 0.92097 0.92356 1.25712 0.94907 0.94972 1.02915 1.70021 1.50956 0.99841 1.34482 0.85634 0.78117 0.77989 0.80364 1.20367 1.21110 1.19126 1.21532 0.97553 1.00315 0.94880 1.19943 0.99652 0.93967 0.93364 0.87509 0.92918 0.93500 0.87762 0.87492 0.77743 0.90501 0.91188 0.93028 0.91351 0.95274 0.93303 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 10.24 71.98 0.74 -2.80 16 2 C 0.12 2.90 7.01 86.38 0.61 3.50 16 3 N -0.37 -12.65 3.60 -334.67 -1.21 -13.85 16 4 N -0.33 -11.75 12.59 -57.27 -0.72 -12.47 16 5 C 0.05 1.63 12.00 85.06 1.02 2.65 16 6 C -0.26 -10.14 5.91 -20.14 -0.12 -10.26 16 7 C 0.09 3.31 6.73 41.64 0.28 3.59 16 8 C -0.04 -1.46 5.06 30.09 0.15 -1.31 16 9 C 0.06 2.80 2.09 -11.30 -0.02 2.78 16 10 H -0.01 -0.29 8.11 -2.39 -0.02 -0.31 16 11 C -0.53 -28.48 8.55 25.60 0.22 -28.27 16 12 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 13 C 0.01 0.75 5.26 84.65 0.45 1.19 16 14 N -0.91 -51.91 11.30 21.45 0.24 -51.67 16 15 Si 0.95 42.56 29.54 68.60 2.03 44.59 16 16 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 17 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 19 C -0.10 -5.00 5.07 30.78 0.16 -4.84 16 20 C -0.03 -1.26 6.28 30.04 0.19 -1.08 16 21 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 23 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.10 2.24 7.90 -2.39 -0.02 2.22 16 25 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.21 5.40 8.06 -2.91 -0.02 5.38 16 27 H 0.08 3.01 8.13 -2.39 -0.02 3.00 16 28 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 29 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 30 H 0.07 3.66 5.86 -2.39 -0.01 3.65 16 31 H 0.03 1.35 8.11 -2.39 -0.02 1.33 16 32 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -62.52 271.76 5.08 -57.44 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 1.08 Total: 10.81 kcal Atomic # 6 Polarization: -38.50 SS G_CDS: 3.66 Total: -34.84 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -1.68 Total: -78.00 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -62.52 5.08 -57.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261114934.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.092 kcal (2) G-P(sol) polarization free energy of solvation -62.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds