Wall clock time and date at job start Mon Mar 30 2020 02:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47212 * 2 1 4 4 C 1.50705 * 109.46906 * 240.00293 * 2 1 3 5 5 H 1.07991 * 120.00250 * 239.99974 * 4 2 1 6 6 C 1.37885 * 119.99639 * 60.00205 * 4 2 1 7 7 N 1.31513 * 120.00005 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99732 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46904 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47164 * 119.99824 * 8 6 4 11 11 H 1.48501 * 109.46874 * 239.99792 * 8 6 4 12 12 N 1.46895 * 109.47459 * 120.00454 * 2 1 3 13 13 C 1.46904 * 110.99969 * 299.99998 * 12 2 1 14 14 C 1.50695 * 109.47190 * 179.97438 * 13 12 2 15 15 C 1.38678 * 120.41675 * 270.25239 * 14 13 12 16 16 C 1.38627 * 118.41930 * 180.24221 * 15 14 13 17 17 C 1.38232 * 119.16085 * 359.75178 * 16 15 14 18 18 N 1.31857 * 120.76541 * 359.97438 * 17 16 15 19 19 C 1.31889 * 121.72235 * 0.02562 * 18 17 16 20 20 H 1.09006 * 109.47150 * 299.99992 * 1 2 3 21 21 H 1.09008 * 109.47388 * 59.99051 * 1 2 3 22 22 H 1.08997 * 109.47487 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46633 * 179.97438 * 3 2 1 24 24 H 1.08994 * 109.47285 * 300.00345 * 3 2 1 25 25 H 1.09000 * 109.46471 * 60.00629 * 3 2 1 26 26 H 0.97004 * 119.99761 * 179.97438 * 7 6 4 27 27 H 1.00900 * 111.00083 * 63.94820 * 12 2 1 28 28 H 1.09001 * 109.46737 * 59.99778 * 13 12 2 29 29 H 1.08996 * 109.46745 * 299.99696 * 13 12 2 30 30 H 1.07994 * 120.78944 * 359.96926 * 15 14 13 31 31 H 1.07997 * 120.42083 * 179.72800 * 16 15 14 32 32 H 1.07999 * 119.61954 * 180.02562 * 17 16 15 33 33 H 1.08002 * 119.61237 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6033 8 14 2.3211 -1.1201 -4.0082 9 1 3.1462 -2.2868 -3.6040 10 1 1.1658 -1.5863 -4.8163 11 1 3.1464 -0.1870 -4.8166 12 7 2.0197 -0.6926 1.1993 13 6 1.5487 -0.0265 2.4211 14 6 2.0694 -0.7639 3.6278 15 6 1.3377 -1.8010 4.1865 16 6 1.8533 -2.4475 5.2991 17 6 3.0734 -2.0432 5.8079 18 7 3.7443 -1.0563 5.2471 19 6 3.2845 -0.4189 4.1880 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5140 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 3.1300 1.4424 0.0005 24 1 1.6767 1.9564 -0.8899 25 1 1.6767 1.9562 0.8901 26 1 0.7086 1.1616 -3.4843 27 1 1.7502 -1.6649 1.1908 28 1 0.4588 -0.0267 2.4378 29 1 1.9122 1.0009 2.4379 30 1 0.3867 -2.0950 3.7676 31 1 1.3085 -3.2565 5.7628 32 1 3.4822 -2.5420 6.6741 33 1 3.8623 0.3850 3.7564 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261118429.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:06 Heat of formation + Delta-G solvation = 34.589449 kcal Electronic energy + Delta-G solvation = -14708.896321 eV Core-core repulsion = 12348.480123 eV Total energy + Delta-G solvation = -2360.416198 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.94659 -36.95156 -33.49444 -31.99829 -31.23839 -28.52498 -25.83164 -25.59018 -24.54474 -23.33335 -21.51043 -18.71535 -16.99554 -16.41574 -16.08145 -15.20255 -14.69734 -14.11896 -13.76784 -13.33259 -13.04644 -12.89124 -12.66606 -12.15679 -11.77270 -11.58488 -10.99743 -10.88540 -10.65181 -10.33844 -10.26459 -10.02609 -9.77273 -9.61070 -9.25689 -8.88845 -8.67939 -8.39456 -7.27217 -6.01256 -4.08247 1.30632 1.45588 3.28258 3.36635 3.41529 3.99329 4.40091 4.62197 4.95818 5.07218 5.17317 5.25606 5.27415 5.53590 5.62597 5.89685 6.08158 6.21937 6.26600 6.54330 6.61101 6.76612 6.85407 6.90512 6.97913 7.16825 7.53885 7.57258 7.80458 7.87978 8.14720 8.32579 8.46741 8.62923 8.98529 9.58127 11.01817 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.047673 B = 0.006391 C = 0.006226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.194524 B = 4380.234360 C = 4496.412939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.232 3.768 3 C -0.126 4.126 4 C -0.496 4.496 5 H 0.061 0.939 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.284 1.284 12 N -0.674 5.674 13 C 0.092 3.908 14 C -0.114 4.114 15 C -0.076 4.076 16 C -0.176 4.176 17 C 0.083 3.917 18 N -0.489 5.489 19 C 0.114 3.886 20 H 0.011 0.989 21 H 0.089 0.911 22 H 0.023 0.977 23 H 0.033 0.967 24 H 0.085 0.915 25 H 0.008 0.992 26 H 0.259 0.741 27 H 0.327 0.673 28 H 0.035 0.965 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.149 0.851 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.605 -3.221 11.494 11.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.143 3.857 3 C -0.185 4.185 4 C -0.534 4.534 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.303 5.303 13 C -0.038 4.038 14 C -0.117 4.117 15 C -0.103 4.103 16 C -0.195 4.195 17 C -0.074 4.074 18 N -0.198 5.198 19 C -0.043 4.043 20 H 0.029 0.971 21 H 0.108 0.892 22 H 0.042 0.958 23 H 0.052 0.948 24 H 0.103 0.897 25 H 0.027 0.973 26 H 0.069 0.931 27 H 0.144 0.856 28 H 0.053 0.947 29 H 0.099 0.901 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.167 0.833 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.739 -2.521 11.682 11.974 hybrid contribution -1.559 -1.040 -1.217 2.234 sum -0.819 -3.561 10.464 11.084 Atomic orbital electron populations 1.22467 1.00435 0.98976 1.00801 1.18597 0.89204 0.91726 0.86157 1.21826 0.99234 0.97466 0.99931 1.21082 1.30708 1.12123 0.89535 0.92114 1.24872 0.95081 0.95104 0.98909 1.69821 1.37073 1.22962 1.23109 0.86462 0.78514 0.79687 0.82859 1.19824 1.21202 1.21052 1.60942 1.63204 1.05480 1.00721 1.20916 0.96952 0.98102 0.87848 1.21134 0.95877 0.96879 0.97765 1.21538 0.99715 0.94241 0.94774 1.22058 0.97940 1.01571 0.97973 1.22653 0.91979 0.93849 0.98949 1.67686 1.34491 1.07593 1.09994 1.22694 0.92797 0.97849 0.90968 0.97055 0.89199 0.95764 0.94771 0.89663 0.97347 0.93085 0.85617 0.94696 0.90145 0.85261 0.85289 0.83348 0.82713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.89 8.01 37.16 0.30 -3.59 16 2 C 0.23 5.52 0.69 -132.75 -0.09 5.43 16 3 C -0.13 -3.00 8.02 37.16 0.30 -2.70 16 4 C -0.50 -13.19 8.22 -34.43 -0.28 -13.48 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.63 5.15 -17.82 -0.09 1.54 16 7 N -0.89 -24.14 9.35 55.43 0.52 -23.62 16 8 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.67 -13.96 6.07 -102.39 -0.62 -14.58 16 13 C 0.09 1.60 5.05 -4.98 -0.03 1.57 16 14 C -0.11 -1.77 5.41 -104.48 -0.57 -2.34 16 15 C -0.08 -1.04 9.86 -39.28 -0.39 -1.42 16 16 C -0.18 -2.10 10.11 -39.44 -0.40 -2.49 16 17 C 0.08 1.06 11.18 -17.54 -0.20 0.86 16 18 N -0.49 -7.52 10.36 -13.25 -0.14 -7.66 16 19 C 0.11 1.79 10.86 -17.55 -0.19 1.59 16 20 H 0.01 0.23 6.40 -51.93 -0.33 -0.11 16 21 H 0.09 2.31 6.07 -51.92 -0.32 2.00 16 22 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 25 H 0.01 0.16 6.40 -51.93 -0.33 -0.17 16 26 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 27 H 0.33 6.69 8.70 -39.29 -0.34 6.35 16 28 H 0.04 0.61 6.26 -51.93 -0.32 0.29 16 29 H 0.08 1.43 6.26 -51.93 -0.32 1.10 16 30 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 31 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.16 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 270.00 15.07 4.07 4.07 Total: -1.00 -27.91 270.00 -7.20 -35.10 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -4.37 Total: 5.74 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -1.63 Total: -15.03 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -0.24 Total: -45.85 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.91 -7.20 -35.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118429.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.694 kcal (2) G-P(sol) polarization free energy of solvation -27.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds