Wall clock time and date at job start Mon Mar 30 2020 02:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47212 * 2 1 4 4 C 1.50705 * 109.46906 * 240.00293 * 2 1 3 5 5 H 1.07991 * 120.00250 * 239.99974 * 4 2 1 6 6 C 1.37885 * 119.99639 * 60.00205 * 4 2 1 7 7 N 1.31513 * 120.00005 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99732 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46904 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47164 * 119.99824 * 8 6 4 11 11 H 1.48501 * 109.46874 * 239.99792 * 8 6 4 12 12 N 1.46895 * 109.47459 * 120.00454 * 2 1 3 13 13 C 1.46904 * 110.99969 * 299.99998 * 12 2 1 14 14 C 1.50695 * 109.47190 * 179.97438 * 13 12 2 15 15 C 1.38678 * 120.41675 * 270.25239 * 14 13 12 16 16 C 1.38627 * 118.41930 * 180.24221 * 15 14 13 17 17 C 1.38232 * 119.16085 * 359.75178 * 16 15 14 18 18 N 1.31857 * 120.76541 * 359.97438 * 17 16 15 19 19 C 1.31889 * 121.72235 * 0.02562 * 18 17 16 20 20 H 1.09006 * 109.47150 * 299.99992 * 1 2 3 21 21 H 1.09008 * 109.47388 * 59.99051 * 1 2 3 22 22 H 1.08997 * 109.47487 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46633 * 179.97438 * 3 2 1 24 24 H 1.08994 * 109.47285 * 300.00345 * 3 2 1 25 25 H 1.09000 * 109.46471 * 60.00629 * 3 2 1 26 26 H 0.97004 * 119.99761 * 179.97438 * 7 6 4 27 27 H 1.00900 * 111.00083 * 63.94820 * 12 2 1 28 28 H 1.09001 * 109.46737 * 59.99778 * 13 12 2 29 29 H 1.08996 * 109.46745 * 299.99696 * 13 12 2 30 30 H 1.07994 * 120.78944 * 359.96926 * 15 14 13 31 31 H 1.07997 * 120.42083 * 179.72800 * 16 15 14 32 32 H 1.07999 * 119.61954 * 180.02562 * 17 16 15 33 33 H 1.08002 * 119.61237 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6033 8 14 2.3211 -1.1201 -4.0082 9 1 3.1462 -2.2868 -3.6040 10 1 1.1658 -1.5863 -4.8163 11 1 3.1464 -0.1870 -4.8166 12 7 2.0197 -0.6926 1.1993 13 6 1.5487 -0.0265 2.4211 14 6 2.0694 -0.7639 3.6278 15 6 1.3377 -1.8010 4.1865 16 6 1.8533 -2.4475 5.2991 17 6 3.0734 -2.0432 5.8079 18 7 3.7443 -1.0563 5.2471 19 6 3.2845 -0.4189 4.1880 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5140 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 3.1300 1.4424 0.0005 24 1 1.6767 1.9564 -0.8899 25 1 1.6767 1.9562 0.8901 26 1 0.7086 1.1616 -3.4843 27 1 1.7502 -1.6649 1.1908 28 1 0.4588 -0.0267 2.4378 29 1 1.9122 1.0009 2.4379 30 1 0.3867 -2.0950 3.7676 31 1 1.3085 -3.2565 5.7628 32 1 3.4822 -2.5420 6.6741 33 1 3.8623 0.3850 3.7564 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261118429.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:05 Heat of formation + Delta-G solvation = 17.032315 kcal Electronic energy + Delta-G solvation = -14709.657655 eV Core-core repulsion = 12348.480123 eV Total energy + Delta-G solvation = -2361.177532 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.04065 -38.66232 -35.09433 -33.37294 -32.56264 -30.12829 -27.69738 -27.46106 -26.08784 -24.40255 -22.75624 -20.53982 -18.39946 -17.84233 -17.27109 -17.00765 -16.14114 -15.60879 -15.20998 -14.74851 -14.57220 -14.09849 -13.90752 -13.83325 -13.55893 -13.17898 -12.87281 -12.59049 -12.40044 -12.24643 -12.13405 -11.73221 -11.64641 -10.78622 -10.66930 -10.41536 -10.35075 -9.87573 -8.91894 -8.02998 -6.16235 0.24327 0.39853 1.41862 1.45576 1.55567 2.45262 2.91481 3.21983 3.58571 3.79667 3.95956 4.06452 4.17175 4.19593 4.55566 4.65915 4.75944 4.88833 4.89628 4.96760 5.00515 5.10579 5.24297 5.28944 5.43484 5.60679 5.64219 5.81084 5.86170 5.97488 6.40584 6.64306 6.83730 7.01844 7.08666 7.53521 8.97923 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.047673 B = 0.006391 C = 0.006226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.194524 B = 4380.234360 C = 4496.412939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.228 3.772 3 C -0.117 4.117 4 C -0.515 4.515 5 H 0.048 0.952 6 C 0.021 3.979 7 N -0.907 5.907 8 Si 0.952 3.048 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.283 1.283 12 N -0.678 5.678 13 C 0.100 3.900 14 C -0.130 4.130 15 C -0.080 4.080 16 C -0.165 4.165 17 C 0.080 3.920 18 N -0.512 5.512 19 C 0.098 3.902 20 H 0.030 0.970 21 H 0.063 0.937 22 H 0.023 0.977 23 H 0.022 0.978 24 H 0.061 0.939 25 H 0.029 0.971 26 H 0.259 0.741 27 H 0.328 0.672 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.144 0.856 31 H 0.167 0.833 32 H 0.182 0.818 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.905 -4.489 12.817 13.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.139 3.861 3 C -0.175 4.175 4 C -0.553 4.553 5 H 0.066 0.934 6 C -0.178 4.178 7 N -0.547 5.547 8 Si 0.779 3.221 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.209 1.209 12 N -0.308 5.308 13 C -0.029 4.029 14 C -0.132 4.132 15 C -0.107 4.107 16 C -0.184 4.184 17 C -0.077 4.077 18 N -0.221 5.221 19 C -0.058 4.058 20 H 0.049 0.951 21 H 0.082 0.918 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.080 0.920 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.145 0.855 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.162 0.838 31 H 0.184 0.816 32 H 0.199 0.801 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.441 -3.785 13.014 13.561 hybrid contribution -1.462 -0.688 -1.521 2.219 sum -1.021 -4.473 11.493 12.375 Atomic orbital electron populations 1.22296 1.00055 0.98774 1.00392 1.18499 0.89418 0.91543 0.86667 1.21677 0.98382 0.97725 0.99742 1.21337 1.30804 1.12081 0.91115 0.93367 1.25501 0.95343 0.95765 1.01221 1.69938 1.37536 1.23661 1.23521 0.85603 0.77994 0.78608 0.79919 1.19868 1.20743 1.20941 1.60805 1.63496 1.05489 1.00985 1.20809 0.97000 0.97783 0.87315 1.20931 0.96513 0.98181 0.97589 1.21799 1.00105 0.93551 0.95221 1.22440 0.97514 1.01618 0.96836 1.23298 0.92150 0.92841 0.99377 1.67703 1.35442 1.08774 1.10218 1.22683 0.93097 0.98390 0.91659 0.95088 0.91834 0.95779 0.95840 0.92022 0.95249 0.93115 0.85508 0.94394 0.90819 0.83849 0.81555 0.80096 0.83207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.16 8.01 71.98 0.58 -6.59 16 2 C 0.23 10.85 0.69 2.78 0.00 10.86 16 3 C -0.12 -5.58 8.02 71.98 0.58 -5.00 16 4 C -0.51 -27.56 8.22 25.60 0.21 -27.34 16 5 H 0.05 2.64 7.81 -2.92 -0.02 2.62 16 6 C 0.02 1.11 5.15 84.66 0.44 1.54 16 7 N -0.91 -49.56 9.35 21.45 0.20 -49.36 16 8 Si 0.95 43.15 29.54 68.60 2.03 45.17 16 9 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 12 N -0.68 -27.81 6.07 -477.87 -2.90 -30.71 16 13 C 0.10 3.42 5.05 85.55 0.43 3.85 16 14 C -0.13 -3.88 5.41 -19.77 -0.11 -3.98 16 15 C -0.08 -1.98 9.86 22.47 0.22 -1.76 16 16 C -0.16 -3.33 10.11 22.36 0.23 -3.10 16 17 C 0.08 1.81 11.18 84.69 0.95 2.75 16 18 N -0.51 -14.97 10.36 -195.83 -2.03 -17.00 16 19 C 0.10 3.01 10.86 84.67 0.92 3.93 16 20 H 0.03 1.26 6.40 -2.38 -0.02 1.24 16 21 H 0.06 3.28 6.07 -2.38 -0.01 3.26 16 22 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 25 H 0.03 1.23 6.40 -2.39 -0.02 1.21 16 26 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 27 H 0.33 13.23 8.70 -89.69 -0.78 12.45 16 28 H 0.04 1.27 6.26 -2.39 -0.01 1.25 16 29 H 0.07 2.58 6.26 -2.39 -0.01 2.56 16 30 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 31 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.18 2.75 8.06 -2.91 -0.02 2.73 16 33 H 0.15 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -59.10 270.00 2.06 -57.04 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.32 Total: 19.71 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: 4.44 Total: -24.84 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -4.73 Total: -97.08 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -59.10 2.06 -57.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118429.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.068 kcal (2) G-P(sol) polarization free energy of solvation -59.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds