Wall clock time and date at job start Mon Mar 30 2020 02:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46988 * 2 1 4 4 C 1.50692 * 109.47578 * 239.99948 * 2 1 3 5 5 H 1.08006 * 120.00554 * 115.67762 * 4 2 1 6 6 C 1.37876 * 119.99917 * 295.68043 * 4 2 1 7 7 N 1.31515 * 120.00325 * 188.46249 * 6 4 2 8 8 Si 1.86804 * 120.00057 * 8.46271 * 6 4 2 9 9 H 1.48508 * 109.47136 * 86.49018 * 8 6 4 10 10 H 1.48498 * 109.47029 * 206.49009 * 8 6 4 11 11 H 1.48499 * 109.47070 * 326.49370 * 8 6 4 12 12 N 1.46903 * 109.47208 * 119.99481 * 2 1 3 13 13 C 1.46898 * 111.00034 * 300.00209 * 12 2 1 14 14 C 1.50697 * 109.47144 * 179.97438 * 13 12 2 15 15 C 1.38232 * 119.61995 * 95.02336 * 14 13 12 16 16 C 1.38620 * 119.16287 * 179.75092 * 15 14 13 17 17 C 1.38675 * 118.42170 * 0.46945 * 16 15 14 18 18 C 1.38171 * 119.16068 * 359.51014 * 17 16 15 19 19 N 1.31858 * 119.62355 * 275.00600 * 14 13 12 20 20 H 1.08994 * 109.47430 * 306.93014 * 1 2 3 21 21 H 1.08999 * 109.47341 * 66.93563 * 1 2 3 22 22 H 1.09002 * 109.46649 * 186.93209 * 1 2 3 23 23 H 1.08999 * 109.47264 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.46974 * 300.00114 * 3 2 1 25 25 H 1.09002 * 109.47291 * 59.99645 * 3 2 1 26 26 H 0.96995 * 120.00273 * 180.02562 * 7 6 4 27 27 H 1.00899 * 110.99954 * 176.05378 * 12 2 1 28 28 H 1.09005 * 109.46855 * 60.00189 * 13 12 2 29 29 H 1.08993 * 109.47521 * 299.99896 * 13 12 2 30 30 H 1.08003 * 120.41570 * 359.95549 * 15 14 13 31 31 H 1.08006 * 120.78713 * 180.23833 * 16 15 14 32 32 H 1.07998 * 120.41844 * 179.78484 * 17 16 15 33 33 H 1.08002 * 119.61983 * 180.25265 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.5946 -0.1674 -1.9758 6 6 1.7744 -2.0535 -1.4045 7 7 2.3491 -2.7115 -2.3876 8 14 0.6084 -2.9388 -0.2442 9 1 -0.7860 -2.7856 -0.7316 10 1 0.9598 -4.3808 -0.1944 11 1 0.7245 -2.3537 1.1157 12 7 2.0197 -0.6924 1.1995 13 6 1.5486 -0.0262 2.4211 14 6 2.0692 -0.7634 3.6279 15 6 3.2342 -0.3380 4.2383 16 6 3.7018 -1.0199 5.3510 17 6 2.9822 -2.1152 5.8044 18 6 1.8257 -2.4817 5.1429 19 7 1.4081 -1.8066 4.0898 20 1 -0.3634 0.6174 0.8214 21 1 -0.3634 0.4026 -0.9455 22 1 -0.3633 -1.0202 0.1240 23 1 3.1299 1.4426 0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 2.1673 -3.6563 -2.5103 27 1 3.0262 -0.7624 1.1910 28 1 0.4587 -0.0265 2.4378 29 1 1.9120 1.0012 2.4379 30 1 3.7716 0.5169 3.8552 31 1 4.6070 -0.7079 5.8506 32 1 3.3190 -2.6721 6.6663 33 1 1.2573 -3.3310 5.4922 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261118858.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:03 Heat of formation + Delta-G solvation = 26.554136 kcal Electronic energy + Delta-G solvation = -15043.730722 eV Core-core repulsion = 12682.966087 eV Total energy + Delta-G solvation = -2360.764635 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.03699 -38.82580 -34.60958 -33.43819 -33.08860 -30.60559 -28.16404 -27.52125 -26.02306 -24.31624 -22.62895 -20.61225 -18.77507 -17.66443 -17.23458 -16.79940 -16.28617 -15.81247 -15.52944 -14.81196 -14.63768 -14.43477 -14.08092 -13.89024 -13.62924 -13.35518 -12.82977 -12.58303 -12.41747 -12.10958 -11.99528 -11.90760 -11.24922 -11.06599 -10.72326 -10.57013 -10.20904 -9.86928 -8.61936 -8.24576 -6.32684 0.25031 0.47945 1.46167 1.57329 1.95420 2.59943 2.88433 3.16602 3.48719 3.78033 4.01160 4.09152 4.26805 4.33566 4.43812 4.53671 4.64159 4.69389 4.76867 4.87367 4.92267 4.98247 5.02786 5.13384 5.30145 5.33423 5.35139 5.56655 5.78542 5.89040 6.19600 6.49405 6.85483 6.88187 7.23607 7.46056 8.88651 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.030918 B = 0.009850 C = 0.008668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.410009 B = 2841.822945 C = 3229.593153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.202 3.798 3 C -0.152 4.152 4 C -0.511 4.511 5 H 0.033 0.967 6 C 0.037 3.963 7 N -0.950 5.950 8 Si 0.928 3.072 9 H -0.305 1.305 10 H -0.337 1.337 11 H -0.163 1.163 12 N -0.676 5.676 13 C 0.100 3.900 14 C 0.117 3.883 15 C -0.175 4.175 16 C -0.076 4.076 17 C -0.175 4.175 18 C 0.078 3.922 19 N -0.509 5.509 20 H 0.062 0.938 21 H 0.049 0.951 22 H 0.032 0.968 23 H 0.043 0.957 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.259 0.741 27 H 0.331 0.669 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.148 0.852 31 H 0.165 0.835 32 H 0.165 0.835 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.045 5.499 18.734 19.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.113 3.887 3 C -0.211 4.211 4 C -0.549 4.549 5 H 0.051 0.949 6 C -0.162 4.162 7 N -0.589 5.589 8 Si 0.758 3.242 9 H -0.234 1.234 10 H -0.268 1.268 11 H -0.084 1.084 12 N -0.308 5.308 13 C -0.028 4.028 14 C -0.020 4.020 15 C -0.195 4.195 16 C -0.102 4.102 17 C -0.195 4.195 18 C -0.079 4.079 19 N -0.219 5.219 20 H 0.080 0.920 21 H 0.068 0.932 22 H 0.051 0.949 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.149 0.851 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.166 0.834 31 H 0.183 0.817 32 H 0.182 0.818 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.211 4.676 18.243 18.833 hybrid contribution 0.855 0.045 -0.116 0.864 sum 0.644 4.721 18.126 18.742 Atomic orbital electron populations 1.22103 0.96897 0.99812 1.00659 1.18818 0.92152 0.90415 0.87316 1.22237 1.00271 0.97466 1.01081 1.21136 1.34861 0.94363 1.04536 0.94895 1.25699 0.96357 0.98360 0.95756 1.70108 1.44778 1.09500 1.34542 0.86482 0.76616 0.74012 0.87095 1.23362 1.26849 1.08353 1.61242 1.15571 1.53378 1.00630 1.20908 1.00633 0.94624 0.86680 1.21396 0.92609 0.92350 0.95681 1.22229 0.96843 1.02662 0.97757 1.21971 0.99776 0.93854 0.94607 1.22466 0.96121 0.98502 1.02364 1.23217 0.95348 0.98512 0.90865 1.67462 1.34778 1.06900 1.12769 0.91958 0.93183 0.94946 0.93798 0.93407 0.91644 0.93246 0.85071 0.90826 0.92011 0.83416 0.81720 0.81753 0.81425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.71 7.42 71.98 0.53 -5.18 16 2 C 0.20 8.85 0.54 2.78 0.00 8.85 16 3 C -0.15 -5.53 8.17 71.98 0.59 -4.94 16 4 C -0.51 -28.77 8.73 25.60 0.22 -28.55 16 5 H 0.03 2.05 7.99 -2.91 -0.02 2.03 16 6 C 0.04 2.22 5.44 84.65 0.46 2.68 16 7 N -0.95 -61.61 13.96 21.45 0.30 -61.31 16 8 Si 0.93 48.62 23.75 68.60 1.63 50.25 16 9 H -0.30 -15.96 7.03 99.48 0.70 -15.26 16 10 H -0.34 -18.68 7.11 99.48 0.71 -17.98 16 11 H -0.16 -7.92 5.19 99.48 0.52 -7.40 16 12 N -0.68 -27.54 2.88 -477.89 -1.38 -28.92 16 13 C 0.10 3.32 5.18 85.56 0.44 3.76 16 14 C 0.12 3.68 6.29 42.55 0.27 3.95 16 15 C -0.17 -4.27 9.72 22.36 0.22 -4.05 16 16 C -0.08 -1.48 10.18 22.47 0.23 -1.26 16 17 C -0.17 -3.42 10.11 22.36 0.23 -3.19 16 18 C 0.08 1.99 11.18 84.67 0.95 2.94 16 19 N -0.51 -17.12 10.27 -183.89 -1.89 -19.01 16 20 H 0.06 2.15 6.79 -2.39 -0.02 2.14 16 21 H 0.05 2.08 8.13 -2.39 -0.02 2.06 16 22 H 0.03 1.46 3.48 -2.39 -0.01 1.45 16 23 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.06 1.95 6.40 -2.39 -0.02 1.94 16 26 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 27 H 0.33 13.69 8.71 -89.70 -0.78 12.91 16 28 H 0.07 2.56 6.46 -2.38 -0.02 2.54 16 29 H 0.06 1.74 6.20 -2.39 -0.01 1.72 16 30 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 31 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 32 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 33 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -71.80 264.14 2.93 -68.88 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.13 Total: 15.09 kcal Atomic # 6 Polarization: -29.12 SS G_CDS: 4.14 Total: -24.98 kcal Atomic # 7 Polarization: -106.27 SS G_CDS: -2.97 Total: -109.24 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 1.63 Total: 50.25 kcal Total: -71.80 2.93 -68.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118858.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.432 kcal (2) G-P(sol) polarization free energy of solvation -71.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds