Wall clock time and date at job start Mon Mar 30 2020 02:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46688 * 2 1 4 4 H 1.08991 * 109.50951 * 54.91219 * 3 2 1 5 5 C 1.53140 * 109.50371 * 174.99962 * 3 2 1 6 6 C 1.53240 * 109.49781 * 189.86015 * 5 3 2 7 7 N 1.46595 * 108.78117 * 309.41635 * 6 5 3 8 8 C 1.35592 * 127.34542 * 197.22151 * 7 6 5 9 9 C 1.39214 * 106.29523 * 179.62866 * 8 7 6 10 10 C 1.41223 * 126.42147 * 180.29352 * 9 8 7 11 11 H 1.08002 * 119.99563 * 0.02562 * 10 9 8 12 12 C 1.39716 * 120.00362 * 180.02562 * 10 9 8 13 13 N 1.31012 * 119.99810 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99826 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47296 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.46825 * 120.00193 * 14 12 10 17 17 H 1.48504 * 109.46563 * 239.99970 * 14 12 10 18 18 N 1.36071 * 107.16493 * 0.27667 * 9 8 7 19 19 C 1.29879 * 109.17401 * 0.02562 * 18 9 8 20 20 C 1.51189 * 126.82799 * 179.97438 * 19 18 9 21 21 H 1.08995 * 109.47679 * 300.00276 * 1 2 3 22 22 H 1.09001 * 109.46954 * 60.00849 * 1 2 3 23 23 H 1.09007 * 109.46270 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47679 * 239.99724 * 2 1 3 25 25 H 1.09001 * 109.46954 * 119.99151 * 2 1 3 26 26 H 1.08996 * 109.46439 * 69.85010 * 5 3 2 27 27 H 1.08994 * 109.45991 * 309.86307 * 5 3 2 28 28 H 1.08994 * 109.58740 * 189.63244 * 6 5 3 29 29 H 1.08994 * 109.70257 * 69.27535 * 6 5 3 30 30 H 1.08002 * 126.85548 * 359.90070 * 8 7 6 31 31 H 0.97001 * 119.99699 * 179.97438 * 13 12 10 32 32 H 1.09004 * 109.72103 * 315.68251 * 20 19 18 33 33 H 1.09005 * 109.71864 * 76.32612 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6044 1.9826 0.8406 5 6 3.5661 1.4454 0.1258 6 6 4.0563 2.8761 0.3729 7 7 3.4624 3.7592 -0.6353 8 6 3.8680 5.0070 -0.9773 9 6 3.0041 5.4373 -1.9805 10 6 3.0476 6.6811 -2.6480 11 1 3.8072 7.4049 -2.3921 12 6 2.1082 6.9752 -3.6395 13 7 1.1871 6.0969 -3.9503 14 14 2.1664 8.6201 -4.5229 15 1 3.2935 9.4277 -3.9916 16 1 2.3611 8.3941 -5.9776 17 1 0.8901 9.3463 -4.3012 18 7 2.1099 4.4349 -2.1978 19 6 2.3771 3.4448 -1.4008 20 6 1.6347 2.1311 -1.3071 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3632 -1.0278 0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 4.0072 1.0642 -0.7951 27 1 3.8628 0.8106 0.9606 28 1 5.1428 2.9090 0.2927 29 1 3.7533 3.2017 1.3679 30 1 4.6986 5.5557 -0.5585 31 1 0.5346 6.3012 -4.6384 32 1 0.5602 2.3142 -1.3177 33 1 1.9079 1.4935 -2.1479 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261163131.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:54 Heat of formation + Delta-G solvation = 14.699177 kcal Electronic energy + Delta-G solvation = -14902.574269 eV Core-core repulsion = 12541.295564 eV Total energy + Delta-G solvation = -2361.278705 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.14263 -38.22758 -35.38006 -34.27861 -31.96145 -30.66128 -28.86090 -27.16206 -24.93224 -23.32954 -21.76022 -21.25445 -19.69637 -18.52095 -17.12603 -16.68621 -16.22550 -15.64672 -15.13726 -14.87648 -14.51767 -14.28798 -14.13878 -13.72918 -13.23013 -12.97369 -12.89042 -12.58169 -12.48440 -12.34834 -12.01594 -11.72722 -11.58161 -11.35661 -11.34580 -11.06216 -9.95173 -9.76624 -8.85183 -8.19693 -6.05247 1.34055 1.40879 1.57065 1.72326 2.34124 2.53677 2.65902 3.63873 3.70443 3.75950 3.84602 3.96973 4.36368 4.44720 4.49830 4.54573 4.61284 4.64721 4.79607 4.91950 4.98183 5.02920 5.12131 5.21808 5.24994 5.32192 5.44656 5.53875 5.56439 5.93663 6.05372 6.42331 6.95610 7.16646 7.33938 8.16175 8.76939 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.046381 B = 0.007340 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.551786 B = 3813.721360 C = 4334.450342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.106 4.106 3 C -0.083 4.083 4 H 0.067 0.933 5 C -0.117 4.117 6 C 0.103 3.897 7 N -0.464 5.464 8 C -0.226 4.226 9 C 0.141 3.859 10 C -0.495 4.495 11 H 0.074 0.926 12 C 0.021 3.979 13 N -0.819 5.819 14 Si 0.983 3.017 15 H -0.257 1.257 16 H -0.271 1.271 17 H -0.271 1.271 18 N -0.511 5.511 19 C 0.156 3.844 20 C -0.013 4.013 21 H 0.053 0.947 22 H 0.043 0.957 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.121 0.879 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.157 0.843 31 H 0.267 0.733 32 H 0.074 0.926 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.800 -11.812 8.592 14.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.143 4.143 3 C -0.102 4.102 4 H 0.086 0.914 5 C -0.154 4.154 6 C -0.019 4.019 7 N -0.154 5.154 8 C -0.354 4.354 9 C 0.017 3.983 10 C -0.530 4.530 11 H 0.092 0.908 12 C -0.192 4.192 13 N -0.447 5.447 14 Si 0.805 3.195 15 H -0.181 1.181 16 H -0.196 1.196 17 H -0.196 1.196 18 N -0.235 5.235 19 C -0.106 4.106 20 C -0.052 4.052 21 H 0.072 0.928 22 H 0.063 0.937 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.106 0.894 26 H 0.084 0.916 27 H 0.139 0.861 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.174 0.826 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.093 -11.919 8.022 14.409 hybrid contribution 0.652 1.209 -0.064 1.375 sum 1.745 -10.710 7.959 13.457 Atomic orbital electron populations 1.21839 0.95893 1.02158 1.01593 1.21503 0.95948 0.93536 1.03332 1.21223 0.95630 0.97542 0.95772 0.91438 1.21909 0.95283 0.94006 1.04243 1.22025 0.98839 0.90409 0.90641 1.44978 1.25198 1.13344 1.31907 1.22443 1.10247 0.90786 1.11964 1.19047 0.91221 0.93943 0.94095 1.18845 1.14767 0.99781 1.19635 0.90783 1.26726 0.93856 1.01622 0.96977 1.70271 1.12982 1.35375 1.26028 0.85161 0.78899 0.77533 0.77909 1.18097 1.19577 1.19594 1.70876 1.27335 1.01247 1.23997 1.24402 0.91905 0.99506 0.94762 1.20169 0.98153 0.87595 0.99329 0.92832 0.93744 0.91273 0.91354 0.89419 0.91609 0.86130 0.89513 0.90313 0.82556 0.92290 0.90747 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.69 71.98 0.70 -2.29 16 2 C -0.11 -1.94 5.39 30.60 0.16 -1.77 16 3 C -0.08 -2.10 2.19 -10.68 -0.02 -2.13 16 4 H 0.07 1.80 8.12 -2.39 -0.02 1.78 16 5 C -0.12 -2.69 5.24 30.72 0.16 -2.53 16 6 C 0.10 3.08 6.96 86.44 0.60 3.68 16 7 N -0.46 -20.89 3.13 -509.29 -1.60 -22.49 16 8 C -0.23 -11.98 11.69 84.35 0.99 -10.99 16 9 C 0.14 8.78 6.69 39.45 0.26 9.05 16 10 C -0.49 -30.75 9.38 23.36 0.22 -30.53 16 11 H 0.07 4.35 7.84 -2.91 -0.02 4.33 16 12 C 0.02 1.27 5.49 85.17 0.47 1.73 16 13 N -0.82 -50.98 11.94 21.79 0.26 -50.72 16 14 Si 0.98 44.17 29.56 68.60 2.03 46.20 16 15 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 16 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 N -0.51 -31.34 9.50 -178.93 -1.70 -33.04 16 19 C 0.16 7.71 7.63 138.00 1.05 8.76 16 20 C -0.01 -0.49 5.08 30.07 0.15 -0.33 16 21 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.04 0.99 6.85 -2.39 -0.02 0.97 16 23 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 24 H 0.07 1.22 8.11 -2.39 -0.02 1.20 16 25 H 0.09 1.20 8.12 -2.39 -0.02 1.18 16 26 H 0.07 1.61 8.12 -2.39 -0.02 1.59 16 27 H 0.12 1.77 8.10 -2.39 -0.02 1.75 16 28 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.16 7.46 8.06 -2.91 -0.02 7.44 16 31 H 0.27 15.22 8.30 -92.71 -0.77 14.45 16 32 H 0.07 2.78 7.20 -2.39 -0.02 2.77 16 33 H 0.08 2.65 8.08 -2.38 -0.02 2.63 16 Total: -1.00 -77.92 270.33 4.81 -73.11 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 1.08 Total: 14.30 kcal Atomic # 6 Polarization: -32.10 SS G_CDS: 4.74 Total: -27.36 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -3.04 Total: -106.25 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -77.92 4.81 -73.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261163131.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.810 kcal (2) G-P(sol) polarization free energy of solvation -77.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds