Wall clock time and date at job start Mon Mar 30 2020 02:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47062 * 2 1 4 4 C 1.53313 * 109.43709 * 239.98750 * 2 1 3 5 5 C 1.53398 * 109.16023 * 170.50688 * 4 2 1 6 6 C 1.51039 * 108.24662 * 48.83313 * 5 4 2 7 7 N 1.30096 * 127.38988 * 164.01776 * 6 5 4 8 8 C 1.34296 * 109.20906 * 180.10499 * 7 6 5 9 9 C 1.50702 * 125.96297 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46872 * 304.97630 * 9 8 7 11 11 H 1.07997 * 120.00276 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99518 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00115 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99532 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47374 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.46942 * 120.00140 * 14 12 10 17 17 H 1.48505 * 109.47074 * 239.99740 * 14 12 10 18 18 C 1.34850 * 108.07597 * 359.95893 * 8 7 6 19 19 N 1.35424 * 123.98283 * 344.04279 * 6 5 4 20 20 C 1.46473 * 124.82195 * 359.82077 * 19 6 5 21 21 H 1.09003 * 109.46820 * 300.01108 * 1 2 3 22 22 H 1.09003 * 109.47107 * 60.00314 * 1 2 3 23 23 H 1.08998 * 109.47619 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.54846 * 50.60130 * 4 2 1 25 25 H 1.08992 * 109.54175 * 290.41248 * 4 2 1 26 26 H 1.09002 * 109.71811 * 289.13000 * 5 4 2 27 27 H 1.09001 * 109.71204 * 168.53133 * 5 4 2 28 28 H 1.09003 * 109.46804 * 64.96929 * 9 8 7 29 29 H 1.08997 * 109.47276 * 184.97515 * 9 8 7 30 30 H 0.97005 * 120.00247 * 179.97438 * 13 12 10 31 31 H 1.07995 * 126.65862 * 179.97438 * 18 8 7 32 32 H 1.09004 * 109.57965 * 102.69412 * 20 19 6 33 33 H 1.08997 * 109.57979 * 223.10022 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0402 -0.7231 -1.2519 5 6 3.5555 -0.5158 -1.3707 6 6 4.1820 -0.8286 -0.0325 7 7 5.4384 -1.0549 0.2180 8 6 5.5908 -1.2961 1.5303 9 6 6.8904 -1.6038 2.2285 10 6 7.5516 -2.7829 1.5622 11 1 7.0779 -3.2617 0.7180 12 6 8.7613 -3.2503 2.0305 13 7 9.3383 -2.6669 3.0582 14 14 9.5804 -4.7121 1.2052 15 1 8.7334 -5.1845 0.0807 16 1 10.9113 -4.3059 0.6864 17 1 9.7477 -5.8085 2.1928 18 6 4.3781 -1.2144 2.1144 19 7 3.4870 -0.9179 1.1264 20 6 2.0407 -0.7224 1.2515 21 1 -0.3633 0.5140 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.5468 -0.3164 -2.1346 25 1 1.8237 -1.7883 -1.1713 26 1 3.7649 0.5190 -1.6419 27 1 3.9595 -1.1842 -2.1311 28 1 7.5487 -0.7370 2.1695 29 1 6.6940 -1.8405 3.2742 30 1 10.1892 -2.9959 3.3879 31 1 4.1559 -1.3565 3.1616 32 1 1.5477 -1.6904 1.3415 33 1 1.8287 -0.1187 2.1339 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261170943.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:08 Heat of formation + Delta-G solvation = 38.358174 kcal Electronic energy + Delta-G solvation = -14629.016409 eV Core-core repulsion = 12268.763636 eV Total energy + Delta-G solvation = -2360.252774 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.60989 -37.19791 -33.21745 -32.70617 -31.42704 -29.21160 -27.23340 -25.65579 -23.75355 -22.56359 -21.22094 -19.17975 -18.69233 -16.41056 -16.05448 -15.43260 -14.52062 -14.45636 -14.36781 -13.66822 -13.49678 -13.00827 -12.62545 -12.52780 -12.16219 -11.67938 -11.45274 -11.30343 -11.02634 -10.90341 -10.81047 -10.57135 -10.51725 -9.69940 -9.21630 -8.91264 -8.69953 -8.24353 -7.29833 -5.85251 -3.84204 2.74955 3.30424 3.42088 3.48538 3.55776 4.06722 4.35609 4.45222 4.62495 4.63658 4.79167 5.15070 5.20291 5.28529 5.37035 5.41752 5.50204 5.53777 5.64039 5.74761 5.80320 5.88624 5.99205 6.13050 6.41327 6.62957 7.00082 7.63189 7.65698 7.85471 7.99492 8.13301 8.57786 9.07550 9.20799 9.77251 11.25937 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.056072 B = 0.006133 C = 0.005818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.237806 B = 4564.020119 C = 4811.111139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 H 0.081 0.919 4 C -0.118 4.118 5 C -0.029 4.029 6 C 0.182 3.818 7 N -0.473 5.473 8 C 0.056 3.944 9 C 0.090 3.910 10 C -0.491 4.491 11 H 0.058 0.942 12 C 0.052 3.948 13 N -0.902 5.902 14 Si 0.894 3.106 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.286 1.286 18 C -0.090 4.090 19 N -0.466 5.466 20 C 0.113 3.887 21 H 0.058 0.942 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.031 0.969 29 H 0.030 0.970 30 H 0.258 0.742 31 H 0.165 0.835 32 H 0.075 0.925 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.545 5.407 -5.596 20.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 H 0.099 0.901 4 C -0.156 4.156 5 C -0.067 4.067 6 C -0.079 4.079 7 N -0.192 5.192 8 C -0.072 4.072 9 C 0.052 3.948 10 C -0.530 4.530 11 H 0.076 0.924 12 C -0.148 4.148 13 N -0.543 5.543 14 Si 0.722 3.278 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.212 1.212 18 C -0.219 4.219 19 N -0.153 5.153 20 C -0.010 4.010 21 H 0.077 0.923 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.183 0.817 32 H 0.094 0.906 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.903 5.407 -6.010 19.644 hybrid contribution -0.147 -0.863 0.414 0.968 sum -18.050 4.544 -5.595 19.436 Atomic orbital electron populations 1.21763 0.93724 1.02317 1.02290 1.21483 0.96396 1.00334 0.94248 0.90093 1.21765 0.95239 1.01116 0.97496 1.20054 0.93218 1.02676 0.90800 1.23231 0.88173 1.07391 0.89117 1.70039 1.14218 1.18004 1.16964 1.21753 0.96196 1.00223 0.89054 1.17675 0.86132 0.96982 0.93964 1.21140 1.04295 1.13107 1.14483 0.92399 1.24993 0.97223 0.97271 0.95278 1.69968 1.17612 1.41380 1.25316 0.86498 0.79318 0.82583 0.79404 1.19822 1.21086 1.21241 1.22294 0.90004 1.15177 0.94453 1.45146 1.07098 1.54698 1.08353 1.21840 0.78986 1.01009 0.99154 0.92317 0.91858 0.92259 0.90452 0.91317 0.89988 0.89151 0.95060 0.95219 0.93216 0.81748 0.90628 0.90032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.17 37.16 0.34 -0.62 16 2 C -0.11 -1.00 2.74 -90.32 -0.25 -1.24 16 3 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 4 C -0.12 -1.18 5.27 -26.36 -0.14 -1.32 16 5 C -0.03 -0.39 6.33 -27.51 -0.17 -0.56 16 6 C 0.18 3.48 7.65 -155.24 -1.19 2.30 16 7 N -0.47 -11.48 11.22 -6.88 -0.08 -11.55 16 8 C 0.06 1.40 6.30 -82.72 -0.52 0.88 16 9 C 0.09 2.55 5.54 -29.03 -0.16 2.39 16 10 C -0.49 -15.00 9.08 -34.44 -0.31 -15.31 16 11 H 0.06 1.81 7.74 -52.49 -0.41 1.40 16 12 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 13 N -0.90 -28.04 13.29 55.43 0.74 -27.30 16 14 Si 0.89 22.95 29.54 -169.99 -5.02 17.93 16 15 H -0.27 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 17 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 18 C -0.09 -1.84 11.53 -16.76 -0.19 -2.04 16 19 N -0.47 -8.11 3.13 -113.76 -0.36 -8.47 16 20 C 0.11 1.33 6.28 -3.92 -0.02 1.31 16 21 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.08 0.59 8.12 -51.93 -0.42 0.16 16 25 H 0.07 0.72 8.12 -51.93 -0.42 0.29 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.03 0.84 8.11 -51.93 -0.42 0.42 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.17 2.91 8.06 -52.49 -0.42 2.49 16 32 H 0.08 0.82 8.12 -51.93 -0.42 0.40 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 275.52 15.07 4.15 4.15 Total: -1.00 -34.94 275.52 -8.31 -43.25 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: -5.03 Total: -5.27 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -2.72 Total: -12.74 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.30 Total: -47.32 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -34.94 -8.31 -43.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261170943.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.609 kcal (2) G-P(sol) polarization free energy of solvation -34.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds