Wall clock time and date at job start Mon Mar 30 2020 02:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47062 * 2 1 4 4 C 1.53313 * 109.43709 * 239.98750 * 2 1 3 5 5 C 1.53398 * 109.16023 * 170.50688 * 4 2 1 6 6 C 1.51039 * 108.24662 * 48.83313 * 5 4 2 7 7 N 1.30096 * 127.38988 * 164.01776 * 6 5 4 8 8 C 1.34296 * 109.20906 * 180.10499 * 7 6 5 9 9 C 1.50702 * 125.96297 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46872 * 304.97630 * 9 8 7 11 11 H 1.07997 * 120.00276 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99518 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00115 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99532 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47374 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.46942 * 120.00140 * 14 12 10 17 17 H 1.48505 * 109.47074 * 239.99740 * 14 12 10 18 18 C 1.34850 * 108.07597 * 359.95893 * 8 7 6 19 19 N 1.35424 * 123.98283 * 344.04279 * 6 5 4 20 20 C 1.46473 * 124.82195 * 359.82077 * 19 6 5 21 21 H 1.09003 * 109.46820 * 300.01108 * 1 2 3 22 22 H 1.09003 * 109.47107 * 60.00314 * 1 2 3 23 23 H 1.08998 * 109.47619 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.54846 * 50.60130 * 4 2 1 25 25 H 1.08992 * 109.54175 * 290.41248 * 4 2 1 26 26 H 1.09002 * 109.71811 * 289.13000 * 5 4 2 27 27 H 1.09001 * 109.71204 * 168.53133 * 5 4 2 28 28 H 1.09003 * 109.46804 * 64.96929 * 9 8 7 29 29 H 1.08997 * 109.47276 * 184.97515 * 9 8 7 30 30 H 0.97005 * 120.00247 * 179.97438 * 13 12 10 31 31 H 1.07995 * 126.65862 * 179.97438 * 18 8 7 32 32 H 1.09004 * 109.57965 * 102.69412 * 20 19 6 33 33 H 1.08997 * 109.57979 * 223.10022 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0402 -0.7231 -1.2519 5 6 3.5555 -0.5158 -1.3707 6 6 4.1820 -0.8286 -0.0325 7 7 5.4384 -1.0549 0.2180 8 6 5.5908 -1.2961 1.5303 9 6 6.8904 -1.6038 2.2285 10 6 7.5516 -2.7829 1.5622 11 1 7.0779 -3.2617 0.7180 12 6 8.7613 -3.2503 2.0305 13 7 9.3383 -2.6669 3.0582 14 14 9.5804 -4.7121 1.2052 15 1 8.7334 -5.1845 0.0807 16 1 10.9113 -4.3059 0.6864 17 1 9.7477 -5.8085 2.1928 18 6 4.3781 -1.2144 2.1144 19 7 3.4870 -0.9179 1.1264 20 6 2.0407 -0.7224 1.2515 21 1 -0.3633 0.5140 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.5468 -0.3164 -2.1346 25 1 1.8237 -1.7883 -1.1713 26 1 3.7649 0.5190 -1.6419 27 1 3.9595 -1.1842 -2.1311 28 1 7.5487 -0.7370 2.1695 29 1 6.6940 -1.8405 3.2742 30 1 10.1892 -2.9959 3.3879 31 1 4.1559 -1.3565 3.1616 32 1 1.5477 -1.6904 1.3415 33 1 1.8287 -0.1187 2.1339 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261170943.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:08 Heat of formation + Delta-G solvation = 16.305234 kcal Electronic energy + Delta-G solvation = -14629.972697 eV Core-core repulsion = 12268.763636 eV Total energy + Delta-G solvation = -2361.209061 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.10339 -38.21244 -35.33754 -34.06196 -32.85713 -30.87996 -28.75774 -26.92108 -25.18674 -24.23978 -22.25639 -20.89065 -19.84621 -18.45111 -17.63322 -16.67521 -16.48355 -15.65456 -15.34544 -14.89944 -14.72802 -14.35826 -14.20670 -13.94523 -13.43494 -13.24115 -12.96697 -12.69219 -12.59306 -12.34767 -11.92451 -11.80861 -11.71687 -11.60764 -11.45918 -10.69248 -10.51455 -10.25715 -8.98896 -8.16358 -6.26340 1.22640 1.37491 1.39449 1.53389 2.01600 2.30419 2.48122 3.13867 3.45601 3.59249 3.73050 3.78328 4.21069 4.32881 4.42654 4.48721 4.57719 4.67645 4.69497 4.83075 4.96285 5.00426 5.03816 5.14095 5.29498 5.31632 5.42169 5.47450 5.58630 5.77789 5.96833 6.30235 6.51964 6.83019 7.39437 7.45033 8.94114 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.056072 B = 0.006133 C = 0.005818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.237806 B = 4564.020119 C = 4811.111139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 H 0.078 0.922 4 C -0.111 4.111 5 C -0.031 4.031 6 C 0.188 3.812 7 N -0.532 5.532 8 C 0.002 3.998 9 C 0.101 3.899 10 C -0.515 4.515 11 H 0.042 0.958 12 C 0.001 3.999 13 N -0.933 5.933 14 Si 0.968 3.032 15 H -0.273 1.273 16 H -0.275 1.275 17 H -0.270 1.270 18 C -0.073 4.073 19 N -0.458 5.458 20 C 0.101 3.899 21 H 0.066 0.934 22 H 0.077 0.923 23 H 0.064 0.936 24 H 0.111 0.889 25 H 0.066 0.934 26 H 0.096 0.904 27 H 0.089 0.911 28 H -0.006 1.006 29 H 0.017 0.983 30 H 0.265 0.735 31 H 0.189 0.811 32 H 0.091 0.909 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.106 5.112 -6.661 22.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.119 4.119 3 H 0.097 0.903 4 C -0.149 4.149 5 C -0.070 4.070 6 C -0.075 4.075 7 N -0.252 5.252 8 C -0.126 4.126 9 C 0.063 3.937 10 C -0.553 4.553 11 H 0.061 0.939 12 C -0.196 4.196 13 N -0.574 5.574 14 Si 0.792 3.208 15 H -0.197 1.197 16 H -0.200 1.200 17 H -0.195 1.195 18 C -0.205 4.205 19 N -0.142 5.142 20 C -0.020 4.020 21 H 0.085 0.915 22 H 0.096 0.904 23 H 0.083 0.917 24 H 0.129 0.871 25 H 0.084 0.916 26 H 0.115 0.885 27 H 0.107 0.893 28 H 0.012 0.988 29 H 0.035 0.965 30 H 0.074 0.926 31 H 0.206 0.794 32 H 0.109 0.891 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.507 5.124 -7.070 22.289 hybrid contribution 0.578 -0.708 0.747 1.180 sum -19.929 4.416 -6.323 21.370 Atomic orbital electron populations 1.21721 0.91054 1.03075 1.03500 1.21503 0.98348 0.99571 0.92506 0.90315 1.21788 0.92348 1.01394 0.99323 1.20352 0.95607 1.03409 0.87605 1.24148 0.87094 1.04836 0.91445 1.69871 1.17719 1.20604 1.17031 1.21322 0.96295 1.04736 0.90265 1.17316 0.87784 0.94893 0.93663 1.21323 1.05290 1.14213 1.14518 0.93941 1.25911 0.97588 1.00332 0.95801 1.70078 1.18118 1.42825 1.26367 0.85363 0.78136 0.78819 0.78466 1.19729 1.20000 1.19539 1.22448 0.89291 1.12906 0.95851 1.45426 1.09142 1.52743 1.06914 1.22382 0.75279 1.02727 1.01591 0.91480 0.90386 0.91717 0.87083 0.91551 0.88545 0.89276 0.98815 0.96491 0.92606 0.79351 0.89081 0.88122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.17 71.98 0.66 -0.53 16 2 C -0.10 -1.51 2.74 -10.60 -0.03 -1.54 16 3 H 0.08 1.27 8.12 -2.39 -0.02 1.25 16 4 C -0.11 -1.80 5.27 30.83 0.16 -1.64 16 5 C -0.03 -0.78 6.33 30.09 0.19 -0.59 16 6 C 0.19 7.12 7.65 138.23 1.06 8.18 16 7 N -0.53 -26.80 11.22 -175.68 -1.97 -28.77 16 8 C 0.00 0.10 6.30 41.40 0.26 0.36 16 9 C 0.10 6.11 5.54 29.10 0.16 6.27 16 10 C -0.52 -32.90 9.08 25.60 0.23 -32.67 16 11 H 0.04 2.77 7.74 -2.91 -0.02 2.75 16 12 C 0.00 0.04 5.46 84.66 0.46 0.51 16 13 N -0.93 -59.53 13.29 21.45 0.28 -59.25 16 14 Si 0.97 47.93 29.54 68.60 2.03 49.96 16 15 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 16 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 17 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 18 C -0.07 -3.01 11.53 83.22 0.96 -2.05 16 19 N -0.46 -15.37 3.13 -513.82 -1.61 -16.98 16 20 C 0.10 2.06 6.28 86.47 0.54 2.60 16 21 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 22 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 23 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.11 1.13 8.12 -2.39 -0.02 1.11 16 25 H 0.07 1.15 8.12 -2.39 -0.02 1.13 16 26 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 28 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 29 H 0.02 1.02 8.11 -2.39 -0.02 1.00 16 30 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 31 H 0.19 6.58 8.06 -2.91 -0.02 6.56 16 32 H 0.09 1.65 8.12 -2.38 -0.02 1.63 16 33 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -80.06 275.52 4.46 -75.60 By element: Atomic # 1 Polarization: -0.52 SS G_CDS: 1.07 Total: 0.55 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 4.66 Total: -21.11 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -3.30 Total: -105.00 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Total: -80.06 4.46 -75.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261170943.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.906 kcal (2) G-P(sol) polarization free energy of solvation -80.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds