Wall clock time and date at job start Mon Mar 30 2020 03:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47143 * 2 1 4 4 N 1.40295 * 126.09285 * 269.96090 * 3 2 1 5 5 C 1.31069 * 108.27335 * 180.10374 * 4 3 2 6 6 C 1.39302 * 108.07538 * 359.97438 * 5 4 3 7 7 C 1.34331 * 126.09088 * 90.00237 * 3 2 1 8 8 C 1.50822 * 128.03557 * 359.85921 * 7 3 2 9 9 C 1.53363 * 108.38148 * 196.57846 * 8 7 3 10 10 C 1.53102 * 109.51286 * 310.06041 * 9 8 7 11 11 C 1.50842 * 127.89853 * 179.89941 * 6 5 4 12 12 H 1.09000 * 109.71045 * 76.89506 * 11 6 5 13 13 C 1.50697 * 109.68284 * 316.35889 * 11 6 5 14 14 H 1.07992 * 120.00474 * 326.01016 * 13 11 6 15 15 C 1.37879 * 119.99842 * 146.00535 * 13 11 6 16 16 N 1.31517 * 120.00144 * 354.59492 * 15 13 11 17 17 Si 1.86804 * 120.00059 * 174.59234 * 15 13 11 18 18 H 1.48502 * 109.46937 * 180.02562 * 17 15 13 19 19 H 1.48496 * 109.47043 * 300.00224 * 17 15 13 20 20 H 1.48497 * 109.47090 * 59.99779 * 17 15 13 21 21 H 1.09006 * 109.47501 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47021 * 299.99741 * 1 2 3 23 23 H 1.08999 * 109.47554 * 59.99512 * 1 2 3 24 24 H 1.09000 * 109.46556 * 239.99746 * 2 1 3 25 25 H 1.09003 * 109.46763 * 120.00068 * 2 1 3 26 26 H 1.07997 * 125.96273 * 179.97438 * 5 4 3 27 27 H 1.09008 * 109.67542 * 76.86040 * 8 7 3 28 28 H 1.08996 * 109.71673 * 316.32849 * 8 7 3 29 29 H 1.09003 * 109.46196 * 190.04367 * 9 8 7 30 30 H 1.09001 * 109.45915 * 70.07545 * 9 8 7 31 31 H 1.09003 * 109.46639 * 310.25067 * 10 9 8 32 32 H 1.09002 * 109.45870 * 190.27515 * 10 9 8 33 33 H 0.96997 * 119.99846 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2945 2.1601 -1.1337 5 6 2.7123 3.3359 -0.7326 6 6 2.7144 3.3418 0.6604 7 6 2.2821 2.1272 1.0855 8 6 2.1419 1.7392 2.5362 9 6 2.1550 3.0183 3.3823 10 6 3.3518 3.8847 2.9810 11 6 3.1162 4.4665 1.5817 12 1 2.3209 5.2108 1.6219 13 6 4.3847 5.1060 1.0786 14 1 5.1354 4.5040 0.5885 15 6 4.5867 6.4599 1.2440 16 7 3.6300 7.2113 1.7438 17 14 6.2193 7.2269 0.7583 18 1 6.1825 8.6855 1.0343 19 1 7.3131 6.6022 1.5447 20 1 6.4603 7.0024 -0.6897 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.8932 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.0041 4.1569 -1.3707 27 1 2.9744 1.0983 2.8268 28 1 1.2012 1.2095 2.6859 29 1 2.2344 2.7551 4.4371 30 1 1.2321 3.5736 3.2152 31 1 4.2554 3.2751 2.9740 32 1 3.4678 4.6979 3.6976 33 1 3.7721 8.1638 1.8597 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261172317.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:39 Heat of formation + Delta-G solvation = 55.441309 kcal Electronic energy + Delta-G solvation = -15107.094782 eV Core-core repulsion = 12747.582789 eV Total energy + Delta-G solvation = -2359.511993 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.64320 -35.86214 -34.12950 -32.68950 -30.11464 -28.65781 -27.90663 -24.89262 -23.34953 -21.82170 -20.81216 -19.66069 -17.69023 -16.52755 -15.81699 -14.72390 -14.55563 -14.29066 -13.65214 -13.34871 -12.81984 -12.51189 -12.42850 -12.19415 -11.95113 -11.83639 -11.22851 -11.11871 -10.99357 -10.80316 -10.41738 -10.08151 -10.03609 -9.59700 -9.04124 -8.93755 -8.44983 -8.41728 -7.17602 -5.94471 -3.97038 2.63871 3.16188 3.36674 3.41104 3.44349 3.86193 4.50393 4.83542 5.13131 5.19485 5.32130 5.35061 5.51875 5.60440 5.63732 5.69877 5.94245 6.05746 6.14238 6.28183 6.45208 6.53663 6.68105 6.73258 6.96979 7.14528 7.29748 7.67493 7.67906 7.84298 7.98765 8.02781 8.49987 8.63697 9.12649 9.65855 11.13281 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.040178 B = 0.008611 C = 0.007613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.725209 B = 3250.939869 C = 3677.110202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.135 3.865 3 N -0.381 5.381 4 N -0.325 5.325 5 C 0.064 3.936 6 C -0.177 4.177 7 C 0.042 3.958 8 C -0.043 4.043 9 C -0.115 4.115 10 C -0.104 4.104 11 C 0.102 3.898 12 H 0.066 0.934 13 C -0.501 4.501 14 H 0.053 0.947 15 C 0.065 3.935 16 N -0.895 5.895 17 Si 0.888 3.112 18 H -0.288 1.288 19 H -0.278 1.278 20 H -0.277 1.277 21 H 0.068 0.932 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.178 0.822 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.638 -11.388 1.046 12.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.013 3.987 3 N -0.166 5.166 4 N -0.147 5.147 5 C -0.120 4.120 6 C -0.188 4.188 7 C -0.083 4.083 8 C -0.082 4.082 9 C -0.153 4.153 10 C -0.142 4.142 11 C 0.082 3.918 12 H 0.084 0.916 13 C -0.540 4.540 14 H 0.071 0.929 15 C -0.137 4.137 16 N -0.533 5.533 17 Si 0.716 3.284 18 H -0.214 1.214 19 H -0.203 1.203 20 H -0.203 1.203 21 H 0.087 0.913 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.195 0.805 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.986 -12.067 0.080 13.057 hybrid contribution 1.104 0.931 0.358 1.488 sum -3.882 -11.136 0.438 11.801 Atomic orbital electron populations 1.22180 0.95180 1.02135 1.03131 1.21383 0.94593 0.79507 1.03236 1.48152 1.53393 1.11216 1.03796 1.77326 1.24751 1.04884 1.07755 1.23584 0.98052 0.94686 0.95704 1.20849 1.07035 0.96530 0.94398 1.20871 1.04203 0.93243 0.89986 1.20170 1.00657 0.98803 0.88540 1.21639 1.01190 0.95276 0.97204 1.21768 0.94840 0.97394 1.00221 1.17507 0.97332 0.89471 0.87467 0.91622 1.21006 1.02739 0.92596 1.37613 0.92895 1.24973 0.96324 0.97277 0.95102 1.69910 1.31848 1.05751 1.45800 0.86727 0.84632 0.77997 0.79058 1.21404 1.20330 1.20261 0.91284 0.92172 0.91829 0.89659 0.89943 0.80504 0.91253 0.92061 0.92822 0.92178 0.93711 0.92554 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 10.24 37.16 0.38 -1.53 16 2 C 0.14 1.78 7.01 -4.05 -0.03 1.76 16 3 N -0.38 -7.07 3.60 -57.14 -0.21 -7.27 16 4 N -0.33 -6.87 12.59 30.54 0.38 -6.48 16 5 C 0.06 1.43 11.56 -17.48 -0.20 1.23 16 6 C -0.18 -4.07 5.42 -105.05 -0.57 -4.64 16 7 C 0.04 0.84 6.73 -82.33 -0.55 0.28 16 8 C -0.04 -0.69 5.83 -27.64 -0.16 -0.85 16 9 C -0.11 -2.02 5.90 -26.49 -0.16 -2.18 16 10 C -0.10 -2.28 5.20 -26.49 -0.14 -2.42 16 11 C 0.10 2.54 2.62 -92.66 -0.24 2.30 16 12 H 0.07 1.83 7.26 -51.93 -0.38 1.46 16 13 C -0.50 -13.68 7.97 -34.44 -0.27 -13.95 16 14 H 0.05 1.47 7.82 -52.49 -0.41 1.05 16 15 C 0.06 1.78 5.45 -17.82 -0.10 1.68 16 16 N -0.89 -25.69 12.78 55.43 0.71 -24.98 16 17 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.08 0.91 7.90 -51.93 -0.41 0.50 16 26 H 0.18 3.83 8.06 -52.49 -0.42 3.40 16 27 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.09 8.11 -51.93 -0.42 0.67 16 31 H 0.04 0.98 8.08 -51.93 -0.42 0.56 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 274.44 15.07 4.14 4.14 Total: -1.00 -30.26 274.44 -7.02 -37.28 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -4.98 Total: -0.65 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -2.04 Total: -18.32 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.89 Total: -38.74 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.26 -7.02 -37.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261172317.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.725 kcal (2) G-P(sol) polarization free energy of solvation -30.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds