Wall clock time and date at job start Mon Mar 30 2020 03:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47143 * 2 1 4 4 N 1.40295 * 126.09285 * 269.96090 * 3 2 1 5 5 C 1.31069 * 108.27335 * 180.10374 * 4 3 2 6 6 C 1.39302 * 108.07538 * 359.97438 * 5 4 3 7 7 C 1.34331 * 126.09088 * 90.00237 * 3 2 1 8 8 C 1.50822 * 128.03557 * 359.85921 * 7 3 2 9 9 C 1.53363 * 108.38148 * 196.57846 * 8 7 3 10 10 C 1.53102 * 109.51286 * 310.06041 * 9 8 7 11 11 C 1.50842 * 127.89853 * 179.89941 * 6 5 4 12 12 H 1.09000 * 109.71045 * 76.89506 * 11 6 5 13 13 C 1.50697 * 109.68284 * 316.35889 * 11 6 5 14 14 H 1.07992 * 120.00474 * 326.01016 * 13 11 6 15 15 C 1.37879 * 119.99842 * 146.00535 * 13 11 6 16 16 N 1.31517 * 120.00144 * 354.59492 * 15 13 11 17 17 Si 1.86804 * 120.00059 * 174.59234 * 15 13 11 18 18 H 1.48502 * 109.46937 * 180.02562 * 17 15 13 19 19 H 1.48496 * 109.47043 * 300.00224 * 17 15 13 20 20 H 1.48497 * 109.47090 * 59.99779 * 17 15 13 21 21 H 1.09006 * 109.47501 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47021 * 299.99741 * 1 2 3 23 23 H 1.08999 * 109.47554 * 59.99512 * 1 2 3 24 24 H 1.09000 * 109.46556 * 239.99746 * 2 1 3 25 25 H 1.09003 * 109.46763 * 120.00068 * 2 1 3 26 26 H 1.07997 * 125.96273 * 179.97438 * 5 4 3 27 27 H 1.09008 * 109.67542 * 76.86040 * 8 7 3 28 28 H 1.08996 * 109.71673 * 316.32849 * 8 7 3 29 29 H 1.09003 * 109.46196 * 190.04367 * 9 8 7 30 30 H 1.09001 * 109.45915 * 70.07545 * 9 8 7 31 31 H 1.09003 * 109.46639 * 310.25067 * 10 9 8 32 32 H 1.09002 * 109.45870 * 190.27515 * 10 9 8 33 33 H 0.96997 * 119.99846 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2945 2.1601 -1.1337 5 6 2.7123 3.3359 -0.7326 6 6 2.7144 3.3418 0.6604 7 6 2.2821 2.1272 1.0855 8 6 2.1419 1.7392 2.5362 9 6 2.1550 3.0183 3.3823 10 6 3.3518 3.8847 2.9810 11 6 3.1162 4.4665 1.5817 12 1 2.3209 5.2108 1.6219 13 6 4.3847 5.1060 1.0786 14 1 5.1354 4.5040 0.5885 15 6 4.5867 6.4599 1.2440 16 7 3.6300 7.2113 1.7438 17 14 6.2193 7.2269 0.7583 18 1 6.1825 8.6855 1.0343 19 1 7.3131 6.6022 1.5447 20 1 6.4603 7.0024 -0.6897 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.8932 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.0041 4.1569 -1.3707 27 1 2.9744 1.0983 2.8268 28 1 1.2012 1.2095 2.6859 29 1 2.2344 2.7551 4.4371 30 1 1.2321 3.5736 3.2152 31 1 4.2554 3.2751 2.9740 32 1 3.4678 4.6979 3.6976 33 1 3.7721 8.1638 1.8597 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261172317.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:39 Heat of formation + Delta-G solvation = 37.570191 kcal Electronic energy + Delta-G solvation = -15107.869732 eV Core-core repulsion = 12747.582789 eV Total energy + Delta-G solvation = -2360.286943 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.21518 -37.49643 -35.44015 -34.58959 -31.71536 -30.26219 -29.38227 -26.81294 -24.55823 -23.50526 -22.43982 -21.18661 -19.26165 -18.44028 -17.47080 -16.40292 -16.15623 -15.60469 -14.96175 -14.80628 -14.44200 -14.33382 -14.00286 -13.51648 -13.45469 -12.93889 -12.84251 -12.76276 -12.65378 -12.21331 -12.17464 -11.91118 -11.53272 -11.32826 -10.95400 -10.80792 -10.49099 -9.95497 -8.87417 -8.04544 -6.14395 1.07894 1.42930 1.43874 1.51863 1.81021 2.12206 2.48634 3.22230 3.74677 3.83831 4.15358 4.17563 4.27529 4.29788 4.41627 4.63878 4.78009 4.82709 4.91157 4.94403 5.01912 5.05249 5.11154 5.23340 5.36158 5.42139 5.60756 5.68789 5.93067 5.95070 6.05812 6.39885 6.52491 6.94105 7.04100 7.50882 9.01474 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.040178 B = 0.008611 C = 0.007613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.725209 B = 3250.939869 C = 3677.110202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.119 3.881 3 N -0.369 5.369 4 N -0.338 5.338 5 C 0.041 3.959 6 C -0.225 4.225 7 C 0.061 3.939 8 C -0.038 4.038 9 C -0.108 4.108 10 C -0.099 4.099 11 C 0.102 3.898 12 H 0.022 0.978 13 C -0.511 4.511 14 H 0.042 0.958 15 C 0.015 3.985 16 N -0.928 5.928 17 Si 0.948 3.052 18 H -0.284 1.284 19 H -0.271 1.271 20 H -0.274 1.274 21 H 0.107 0.893 22 H 0.057 0.943 23 H 0.042 0.958 24 H 0.095 0.905 25 H 0.117 0.883 26 H 0.167 0.833 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.042 0.958 32 H 0.032 0.968 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.911 -14.224 2.005 15.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.000 4.000 3 N -0.153 5.153 4 N -0.161 5.161 5 C -0.142 4.142 6 C -0.236 4.236 7 C -0.067 4.067 8 C -0.077 4.077 9 C -0.146 4.146 10 C -0.137 4.137 11 C 0.083 3.917 12 H 0.040 0.960 13 C -0.550 4.550 14 H 0.060 0.940 15 C -0.183 4.183 16 N -0.568 5.568 17 Si 0.774 3.226 18 H -0.209 1.209 19 H -0.196 1.196 20 H -0.199 1.199 21 H 0.125 0.875 22 H 0.076 0.924 23 H 0.061 0.939 24 H 0.113 0.887 25 H 0.135 0.865 26 H 0.184 0.816 27 H 0.113 0.887 28 H 0.120 0.880 29 H 0.108 0.892 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.264 -14.933 1.018 15.866 hybrid contribution 1.127 1.688 0.037 2.030 sum -4.137 -13.245 1.055 13.916 Atomic orbital electron populations 1.22139 0.93504 1.04273 1.01982 1.21979 0.95950 0.76598 1.05492 1.48618 1.51450 1.12606 1.02651 1.77244 1.25126 1.04600 1.09174 1.23510 0.99454 0.95340 0.95868 1.20725 1.10657 0.97819 0.94349 1.21334 1.01358 0.92052 0.92003 1.20345 1.03782 0.98421 0.85150 1.21557 0.98212 0.95141 0.99655 1.21582 0.97039 0.97396 0.97677 1.17305 0.94871 0.89582 0.89959 0.95978 1.21285 1.03493 0.93001 1.37180 0.93981 1.25684 0.99447 0.97767 0.95382 1.70040 1.33592 1.05860 1.47269 0.85767 0.80812 0.77250 0.78775 1.20902 1.19607 1.19935 0.87481 0.92382 0.93922 0.88652 0.86537 0.81630 0.88721 0.88012 0.89168 0.93194 0.93878 0.94880 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 10.24 71.98 0.74 -2.28 16 2 C 0.12 2.66 7.01 86.38 0.61 3.26 16 3 N -0.37 -12.86 3.60 -334.69 -1.21 -14.06 16 4 N -0.34 -14.24 12.59 -57.28 -0.72 -14.96 16 5 C 0.04 1.91 11.56 85.06 0.98 2.89 16 6 C -0.22 -10.48 5.42 -20.14 -0.11 -10.59 16 7 C 0.06 2.28 6.73 41.64 0.28 2.56 16 8 C -0.04 -1.07 5.83 30.01 0.17 -0.90 16 9 C -0.11 -3.53 5.90 30.75 0.18 -3.34 16 10 C -0.10 -4.35 5.20 30.75 0.16 -4.19 16 11 C 0.10 5.32 2.62 -12.12 -0.03 5.29 16 12 H 0.02 1.32 7.26 -2.39 -0.02 1.30 16 13 C -0.51 -29.03 7.97 25.60 0.20 -28.82 16 14 H 0.04 2.42 7.82 -2.91 -0.02 2.39 16 15 C 0.02 0.86 5.45 84.65 0.46 1.32 16 16 N -0.93 -55.46 12.78 21.45 0.27 -55.19 16 17 Si 0.95 44.82 29.54 68.60 2.03 46.84 16 18 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 20 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 21 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 22 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 23 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.12 1.88 7.90 -2.39 -0.02 1.86 16 26 H 0.17 7.73 8.06 -2.91 -0.02 7.71 16 27 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 28 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.05 1.74 8.11 -2.39 -0.02 1.72 16 31 H 0.04 1.87 8.08 -2.39 -0.02 1.85 16 32 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -68.96 274.44 5.09 -63.86 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 1.07 Total: 8.30 kcal Atomic # 6 Polarization: -38.45 SS G_CDS: 3.65 Total: -34.80 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -1.65 Total: -84.21 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -68.96 5.09 -63.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261172317.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.433 kcal (2) G-P(sol) polarization free energy of solvation -68.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds