Wall clock time and date at job start Mon Mar 30 2020 03:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36884 * 126.39554 * 2 1 4 4 C 1.34665 * 106.81779 * 180.12178 * 3 2 1 5 5 C 1.50706 * 125.98892 * 179.85170 * 4 3 2 6 6 C 1.50698 * 109.47294 * 124.71717 * 5 4 3 7 7 H 1.08005 * 119.99819 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00046 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99944 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99979 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47548 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47233 * 119.99722 * 10 8 6 13 13 H 1.48500 * 109.46790 * 239.99650 * 10 8 6 14 14 N 1.34128 * 108.02276 * 359.58258 * 4 3 2 15 15 C 1.30498 * 109.25181 * 0.26738 * 14 4 3 16 16 C 1.50701 * 125.64864 * 180.02562 * 15 14 4 17 17 C 1.53786 * 113.61517 * 39.11040 * 16 15 14 18 18 C 1.53953 * 87.01907 * 220.04813 * 17 16 15 19 19 C 1.53775 * 87.11441 * 25.36195 * 18 17 16 20 20 H 1.09003 * 109.47049 * 270.33951 * 1 2 3 21 21 H 1.08997 * 109.47701 * 30.34885 * 1 2 3 22 22 H 1.09007 * 109.47058 * 150.34549 * 1 2 3 23 23 H 1.08002 * 126.59166 * 0.02562 * 3 2 1 24 24 H 1.09001 * 109.46953 * 244.71159 * 5 4 3 25 25 H 1.09000 * 109.47318 * 4.70757 * 5 4 3 26 26 H 0.96997 * 119.99752 * 180.02562 * 9 8 6 27 27 H 1.09005 * 112.85289 * 170.30410 * 16 15 14 28 28 H 1.08999 * 113.61045 * 334.57178 * 17 16 15 29 29 H 1.09001 * 113.61260 * 105.46898 * 17 16 15 30 30 H 1.09004 * 113.53560 * 270.80782 * 18 17 16 31 31 H 1.09002 * 113.73864 * 139.94326 * 18 17 16 32 32 H 1.08991 * 113.61619 * 220.09030 * 19 18 17 33 33 H 1.09003 * 113.61291 * 89.18481 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5460 0.6506 -0.0027 5 6 4.7890 1.5028 -0.0069 6 6 5.6639 1.1208 1.1591 7 1 5.3509 0.3394 1.8358 8 6 6.8633 1.7696 1.3626 9 7 7.2441 2.7214 0.5388 10 14 7.9474 1.2966 2.8084 11 1 7.2973 0.2063 3.5789 12 1 9.2656 0.8311 2.3073 13 1 8.1412 2.4768 3.6887 14 7 3.5096 -0.6902 0.0049 15 6 2.2664 -1.0869 0.0066 16 6 1.8019 -2.5205 0.0151 17 6 2.6516 -3.4380 0.9102 18 6 2.5214 -4.5023 -0.1947 19 6 2.3133 -3.3409 -1.1809 20 1 -0.3633 0.0061 1.0277 21 1 -0.3634 0.8868 -0.5192 22 1 -0.3633 -0.8931 -0.5085 23 1 1.9612 2.1346 0.0004 24 1 5.3345 1.3450 -0.9374 25 1 4.5098 2.5531 0.0769 26 1 8.0881 3.1776 0.6818 27 1 0.7294 -2.6170 0.1842 28 1 3.6717 -3.0827 1.0562 29 1 2.1608 -3.7139 1.8435 30 1 1.6458 -5.1417 -0.0820 31 1 3.4374 -5.0661 -0.3710 32 1 1.5498 -3.5385 -1.9332 33 1 3.2408 -2.9591 -1.6077 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261190393.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:35 Heat of formation + Delta-G solvation = 70.429860 kcal Electronic energy + Delta-G solvation = -14640.764026 eV Core-core repulsion = 12281.901985 eV Total energy + Delta-G solvation = -2358.862041 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.42559 -38.16865 -33.97536 -32.61065 -30.09661 -27.96433 -26.38880 -25.42683 -24.80257 -22.64468 -20.12007 -19.58608 -18.45267 -16.44794 -16.03861 -15.30580 -15.14733 -14.51275 -14.35896 -13.45983 -12.90831 -12.77268 -12.28444 -12.23254 -12.18924 -11.96106 -11.52211 -11.18666 -10.67937 -10.56667 -10.52961 -10.33264 -10.25895 -9.71581 -9.22568 -8.90921 -8.68576 -8.25151 -7.31882 -5.86438 -3.85393 2.69473 3.34144 3.41091 3.47653 3.54590 4.02030 4.61170 4.70350 4.80446 4.86551 4.91969 5.04915 5.17444 5.26259 5.43996 5.47736 5.52144 5.72297 5.78909 5.97335 6.04241 6.21346 6.26826 6.40934 6.59336 6.72574 6.98078 7.62704 7.64386 7.84179 7.98124 8.12187 8.56414 9.06867 9.19708 9.76137 11.24793 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.028898 B = 0.007770 C = 0.006621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.706841 B = 3602.827261 C = 4228.140302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.470 5.470 3 C -0.095 4.095 4 C 0.059 3.941 5 C 0.090 3.910 6 C -0.491 4.491 7 H 0.058 0.942 8 C 0.052 3.948 9 N -0.902 5.902 10 Si 0.893 3.107 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.286 1.286 14 N -0.468 5.468 15 C 0.193 3.807 16 C -0.028 4.028 17 C -0.121 4.121 18 C -0.143 4.143 19 C -0.123 4.123 20 H 0.067 0.933 21 H 0.078 0.922 22 H 0.077 0.923 23 H 0.165 0.835 24 H 0.031 0.969 25 H 0.029 0.971 26 H 0.258 0.742 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.693 -9.555 -1.798 17.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.156 5.156 3 C -0.224 4.224 4 C -0.070 4.070 5 C 0.053 3.947 6 C -0.530 4.530 7 H 0.076 0.924 8 C -0.148 4.148 9 N -0.543 5.543 10 Si 0.721 3.279 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.212 1.212 14 N -0.188 5.188 15 C -0.068 4.068 16 C -0.048 4.048 17 C -0.160 4.160 18 C -0.180 4.180 19 C -0.161 4.161 20 H 0.085 0.915 21 H 0.097 0.903 22 H 0.096 0.904 23 H 0.182 0.818 24 H 0.049 0.951 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.111 0.889 28 H 0.119 0.881 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.026 -9.905 -1.823 17.267 hybrid contribution -0.257 0.574 0.822 1.035 sum -14.283 -9.331 -1.001 17.090 Atomic orbital electron populations 1.21832 0.78452 1.03609 1.02603 1.45104 1.06362 1.06983 1.57195 1.22437 0.91200 0.91669 1.17077 1.21663 0.95041 0.90009 1.00288 1.17672 0.87070 0.92105 0.97895 1.21132 1.03014 1.18497 1.10332 0.92376 1.24996 0.97827 0.95319 0.96639 1.69970 1.22339 1.24611 1.37357 0.86507 0.80476 0.78216 0.82658 1.19808 1.21096 1.21241 1.70104 1.16953 1.12728 1.18989 1.23020 0.86419 0.89717 1.07617 1.20848 0.98826 0.85838 0.99317 1.22958 1.01861 0.94857 0.96280 1.22838 1.01762 0.96341 0.97074 1.22929 1.02047 0.95619 0.95523 0.91469 0.90276 0.90395 0.81804 0.95070 0.95263 0.93211 0.88948 0.88104 0.91834 0.90619 0.91111 0.91897 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 10.83 59.85 0.65 1.51 16 2 N -0.47 -8.05 3.15 -121.28 -0.38 -8.44 16 3 C -0.09 -1.91 11.46 -16.56 -0.19 -2.10 16 4 C 0.06 1.44 6.30 -82.85 -0.52 0.91 16 5 C 0.09 2.52 5.54 -29.03 -0.16 2.36 16 6 C -0.49 -14.81 9.08 -34.44 -0.31 -15.12 16 7 H 0.06 1.79 7.74 -52.48 -0.41 1.38 16 8 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -27.89 13.29 55.43 0.74 -27.16 16 10 Si 0.89 22.81 29.54 -169.99 -5.02 17.79 16 11 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 N -0.47 -10.96 10.83 -7.07 -0.08 -11.04 16 15 C 0.19 3.62 6.96 -155.42 -1.08 2.54 16 16 C -0.03 -0.39 3.95 -90.95 -0.36 -0.75 16 17 C -0.12 -1.68 7.63 -25.83 -0.20 -1.88 16 18 C -0.14 -1.61 8.09 -25.83 -0.21 -1.82 16 19 C -0.12 -1.58 7.63 -25.92 -0.20 -1.78 16 20 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 22 H 0.08 0.69 7.29 -51.92 -0.38 0.31 16 23 H 0.16 2.87 8.06 -52.49 -0.42 2.44 16 24 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.03 0.82 8.11 -51.93 -0.42 0.40 16 26 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.09 1.04 7.19 -51.93 -0.37 0.66 16 28 H 0.10 1.72 7.78 -51.93 -0.40 1.31 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.44 8.09 -51.93 -0.42 1.02 16 LS Contribution 280.61 15.07 4.23 4.23 Total: -1.00 -34.23 280.61 -8.11 -42.35 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -4.92 Total: -3.05 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -2.68 Total: -14.69 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.28 Total: -46.63 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -34.23 -8.11 -42.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261190393.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.777 kcal (2) G-P(sol) polarization free energy of solvation -34.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds