Wall clock time and date at job start Mon Mar 30 2020 03:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46785 * 2 1 4 4 C 1.35204 * 126.00039 * 125.00253 * 3 2 1 5 5 C 1.34574 * 107.61507 * 179.97438 * 4 3 2 6 6 C 1.40491 * 108.03983 * 0.07666 * 5 4 3 7 7 N 1.30124 * 108.22350 * 359.90069 * 6 5 4 8 8 C 1.50945 * 123.48661 * 179.82008 * 6 5 4 9 9 H 1.08998 * 109.71546 * 103.07318 * 8 6 5 10 10 C 1.50699 * 109.71876 * 223.67639 * 8 6 5 11 11 H 1.08000 * 120.00094 * 119.99386 * 10 8 6 12 12 C 1.37875 * 119.99966 * 300.00443 * 10 8 6 13 13 N 1.31513 * 120.00158 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 119.99760 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47001 * 59.99988 * 14 12 10 16 16 H 1.48505 * 109.46826 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47238 * 299.99883 * 14 12 10 18 18 C 1.53370 * 108.20238 * 343.40245 * 8 6 5 19 19 C 1.53029 * 109.75029 * 50.64931 * 18 8 6 20 20 C 1.50882 * 128.32100 * 180.25733 * 5 4 3 21 21 H 1.08996 * 109.46756 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47367 * 300.00073 * 1 2 3 23 23 H 1.08999 * 109.46933 * 60.00162 * 1 2 3 24 24 H 1.09000 * 109.47367 * 239.99927 * 2 1 3 25 25 H 1.08999 * 109.46933 * 119.99838 * 2 1 3 26 26 H 1.08002 * 126.19224 * 0.22475 * 4 3 2 27 27 H 0.96997 * 120.00017 * 180.02562 * 13 12 10 28 28 H 1.09000 * 109.42374 * 170.74000 * 18 8 6 29 29 H 1.09002 * 109.42538 * 290.61705 * 18 8 6 30 30 H 1.08992 * 109.42416 * 48.34767 * 19 18 8 31 31 H 1.09002 * 109.42623 * 168.24442 * 19 18 8 32 32 H 1.08997 * 109.71750 * 282.95155 * 20 5 4 33 33 H 1.08995 * 109.72072 * 43.60798 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8747 1.9214 0.8960 5 6 3.0712 3.2065 0.5480 6 6 2.3075 3.4674 -0.6020 7 7 1.6793 2.3760 -0.9297 8 6 2.2679 4.8113 -1.2882 9 1 2.8831 4.7832 -2.1875 10 6 0.8468 5.1533 -1.6550 11 1 0.3849 6.0434 -1.2541 12 6 0.1362 4.3297 -2.5022 13 7 0.6984 3.2454 -2.9898 14 14 -1.6256 4.7533 -2.9562 15 1 -1.6586 6.0760 -3.6304 16 1 -2.1630 3.7168 -3.8739 17 1 -2.4554 4.8040 -1.7257 18 6 2.8197 5.8618 -0.3165 19 6 4.1653 5.3936 0.2418 20 6 3.9437 4.2357 1.2232 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.3234 1.4125 1.7363 27 1 0.1986 2.6662 -3.5861 28 1 2.9545 6.8069 -0.8427 29 1 2.1162 6.0013 0.5044 30 1 4.8007 5.0579 -0.5777 31 1 4.6498 6.2204 0.7612 32 1 3.4492 4.6045 2.1218 33 1 4.9023 3.7890 1.4872 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261190966.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:35 Heat of formation + Delta-G solvation = 70.868799 kcal Electronic energy + Delta-G solvation = -15380.973511 eV Core-core repulsion = 13022.130503 eV Total energy + Delta-G solvation = -2358.843007 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.14277 -35.96785 -32.97263 -32.86841 -30.21614 -28.38314 -27.55562 -24.71915 -23.35631 -21.18747 -20.50090 -19.44674 -17.56907 -16.23692 -15.58883 -14.48311 -14.39234 -14.12522 -13.78062 -12.96016 -12.65893 -12.45696 -12.08184 -11.82821 -11.72554 -11.33984 -11.09643 -10.90165 -10.77795 -10.65557 -10.40022 -10.03002 -9.69598 -9.38325 -9.31709 -8.48820 -8.18037 -7.70979 -7.12349 -5.77903 -3.85207 3.09223 3.41457 3.44861 3.48015 3.64645 4.27206 4.59810 5.13505 5.48127 5.51796 5.58932 5.64527 5.76871 5.82600 5.85558 5.95731 6.19573 6.34572 6.45473 6.57380 6.60207 6.65696 6.76252 6.86570 6.87596 7.12385 7.25886 7.45366 7.82482 8.00567 8.16059 8.28719 8.50634 9.09051 9.41867 9.76796 11.25588 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.020372 B = 0.015066 C = 0.009293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.129158 B = 1858.084391 C = 3012.426156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 N -0.417 5.417 4 C 0.017 3.983 5 C -0.256 4.256 6 C 0.111 3.889 7 N -0.192 5.192 8 C 0.119 3.881 9 H 0.039 0.961 10 C -0.531 4.531 11 H 0.055 0.945 12 C 0.072 3.928 13 N -0.836 5.836 14 Si 0.884 3.116 15 H -0.279 1.279 16 H -0.289 1.289 17 H -0.280 1.280 18 C -0.104 4.104 19 C -0.116 4.116 20 C -0.029 4.029 21 H 0.060 0.940 22 H 0.053 0.947 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.147 0.853 27 H 0.257 0.743 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.035 -3.935 7.113 9.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.022 3.978 3 N -0.200 5.200 4 C -0.126 4.126 5 C -0.269 4.269 6 C -0.060 4.060 7 N -0.008 5.008 8 C 0.099 3.901 9 H 0.057 0.943 10 C -0.569 4.569 11 H 0.073 0.927 12 C -0.134 4.134 13 N -0.471 5.471 14 Si 0.712 3.288 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.206 1.206 18 C -0.142 4.142 19 C -0.154 4.154 20 C -0.068 4.068 21 H 0.079 0.921 22 H 0.073 0.927 23 H 0.094 0.906 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.164 0.836 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.142 -4.866 6.161 8.456 hybrid contribution -0.506 0.223 0.492 0.740 sum 2.637 -4.643 6.652 8.530 Atomic orbital electron populations 1.22008 0.94837 1.01287 1.03790 1.21223 0.95340 0.79671 1.01605 1.49604 1.36967 1.10370 1.23027 1.21639 0.98752 0.95035 0.97196 1.20166 1.09103 0.94683 1.02926 1.23347 0.92807 0.96243 0.93632 1.78308 1.19476 0.96012 1.06996 1.17378 0.96800 0.83968 0.91936 0.94277 1.20880 0.97360 1.09448 1.29213 0.92650 1.24922 0.97424 0.94862 0.96173 1.69947 1.36223 1.11529 1.29419 0.86814 0.86020 0.77845 0.78135 1.20425 1.21530 1.20633 1.21602 0.94747 0.98747 0.99135 1.21587 0.98621 0.96736 0.98430 1.19826 0.96429 0.93751 0.96779 0.92120 0.92740 0.90647 0.91201 0.90691 0.83587 0.93278 0.92930 0.92939 0.92516 0.93336 0.92722 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 10.10 37.16 0.38 -2.24 16 2 C 0.14 2.38 7.23 -4.04 -0.03 2.35 16 3 N -0.42 -8.97 3.69 -61.49 -0.23 -9.20 16 4 C 0.02 0.34 11.41 -17.36 -0.20 0.14 16 5 C -0.26 -5.58 5.89 -104.98 -0.62 -6.20 16 6 C 0.11 2.87 6.25 -82.35 -0.51 2.36 16 7 N -0.19 -5.07 9.42 33.75 0.32 -4.75 16 8 C 0.12 3.12 2.48 -92.61 -0.23 2.89 16 9 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 10 C -0.53 -15.08 8.56 -34.44 -0.29 -15.37 16 11 H 0.06 1.55 7.75 -52.49 -0.41 1.14 16 12 C 0.07 2.06 5.12 -17.82 -0.09 1.97 16 13 N -0.84 -24.60 10.55 55.43 0.58 -24.01 16 14 Si 0.88 22.04 29.54 -169.99 -5.02 17.02 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 17 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 18 C -0.10 -2.22 5.13 -26.52 -0.14 -2.36 16 19 C -0.12 -2.10 5.87 -26.51 -0.16 -2.25 16 20 C -0.03 -0.53 6.28 -27.59 -0.17 -0.70 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 24 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 26 H 0.15 2.25 8.06 -52.49 -0.42 1.83 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 1.14 8.08 -51.93 -0.42 0.72 16 30 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 270.47 15.07 4.08 4.08 Total: -1.00 -31.82 270.47 -7.36 -39.18 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -5.03 Total: -2.89 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -2.07 Total: -19.43 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.68 Total: -37.96 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.82 -7.36 -39.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261190966.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.049 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds