Wall clock time and date at job start Mon Mar 30 2020 03:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46785 * 2 1 4 4 C 1.35204 * 126.00039 * 125.00253 * 3 2 1 5 5 C 1.34574 * 107.61507 * 179.97438 * 4 3 2 6 6 C 1.40491 * 108.03983 * 0.07666 * 5 4 3 7 7 N 1.30124 * 108.22350 * 359.90069 * 6 5 4 8 8 C 1.50945 * 123.48661 * 179.82008 * 6 5 4 9 9 H 1.08998 * 109.71546 * 103.07318 * 8 6 5 10 10 C 1.50699 * 109.71876 * 223.67639 * 8 6 5 11 11 H 1.08000 * 120.00094 * 119.99386 * 10 8 6 12 12 C 1.37875 * 119.99966 * 300.00443 * 10 8 6 13 13 N 1.31513 * 120.00158 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 119.99760 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47001 * 59.99988 * 14 12 10 16 16 H 1.48505 * 109.46826 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47238 * 299.99883 * 14 12 10 18 18 C 1.53370 * 108.20238 * 343.40245 * 8 6 5 19 19 C 1.53029 * 109.75029 * 50.64931 * 18 8 6 20 20 C 1.50882 * 128.32100 * 180.25733 * 5 4 3 21 21 H 1.08996 * 109.46756 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47367 * 300.00073 * 1 2 3 23 23 H 1.08999 * 109.46933 * 60.00162 * 1 2 3 24 24 H 1.09000 * 109.47367 * 239.99927 * 2 1 3 25 25 H 1.08999 * 109.46933 * 119.99838 * 2 1 3 26 26 H 1.08002 * 126.19224 * 0.22475 * 4 3 2 27 27 H 0.96997 * 120.00017 * 180.02562 * 13 12 10 28 28 H 1.09000 * 109.42374 * 170.74000 * 18 8 6 29 29 H 1.09002 * 109.42538 * 290.61705 * 18 8 6 30 30 H 1.08992 * 109.42416 * 48.34767 * 19 18 8 31 31 H 1.09002 * 109.42623 * 168.24442 * 19 18 8 32 32 H 1.08997 * 109.71750 * 282.95155 * 20 5 4 33 33 H 1.08995 * 109.72072 * 43.60798 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8747 1.9214 0.8960 5 6 3.0712 3.2065 0.5480 6 6 2.3075 3.4674 -0.6020 7 7 1.6793 2.3760 -0.9297 8 6 2.2679 4.8113 -1.2882 9 1 2.8831 4.7832 -2.1875 10 6 0.8468 5.1533 -1.6550 11 1 0.3849 6.0434 -1.2541 12 6 0.1362 4.3297 -2.5022 13 7 0.6984 3.2454 -2.9898 14 14 -1.6256 4.7533 -2.9562 15 1 -1.6586 6.0760 -3.6304 16 1 -2.1630 3.7168 -3.8739 17 1 -2.4554 4.8040 -1.7257 18 6 2.8197 5.8618 -0.3165 19 6 4.1653 5.3936 0.2418 20 6 3.9437 4.2357 1.2232 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.3234 1.4125 1.7363 27 1 0.1986 2.6662 -3.5861 28 1 2.9545 6.8069 -0.8427 29 1 2.1162 6.0013 0.5044 30 1 4.8007 5.0579 -0.5777 31 1 4.6498 6.2204 0.7612 32 1 3.4492 4.6045 2.1218 33 1 4.9023 3.7890 1.4872 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261190966.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:35 Heat of formation + Delta-G solvation = 51.677301 kcal Electronic energy + Delta-G solvation = -15381.805716 eV Core-core repulsion = 13022.130503 eV Total energy + Delta-G solvation = -2359.675213 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.79907 -37.60581 -34.85445 -34.39803 -32.06171 -29.96460 -29.27444 -26.57118 -24.98992 -22.75498 -22.15991 -21.07357 -19.25886 -18.27520 -17.17162 -16.50043 -15.90313 -15.70575 -15.30225 -14.46597 -14.43491 -14.14029 -13.54451 -13.47763 -13.40520 -12.92565 -12.74037 -12.64305 -12.54455 -12.28411 -12.11294 -11.66689 -11.44721 -11.29773 -11.06885 -10.38353 -10.20408 -9.51857 -8.72870 -7.94161 -6.07925 1.38105 1.40488 1.46603 1.52675 2.18323 2.40253 2.55613 3.34565 3.83286 4.13712 4.22829 4.33619 4.35372 4.38535 4.40371 4.70172 4.78713 4.88741 4.97510 5.01741 5.13011 5.15398 5.21315 5.29226 5.38186 5.48009 5.65581 5.70957 5.81346 5.94552 6.33157 6.45075 6.73513 6.94268 7.55534 7.66754 9.07305 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.020372 B = 0.015066 C = 0.009293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.129158 B = 1858.084391 C = 3012.426156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.134 3.866 3 N -0.421 5.421 4 C 0.031 3.969 5 C -0.279 4.279 6 C 0.077 3.923 7 N -0.247 5.247 8 C 0.111 3.889 9 H 0.000 1.000 10 C -0.553 4.553 11 H 0.050 0.950 12 C 0.027 3.973 13 N -0.858 5.858 14 Si 0.942 3.058 15 H -0.268 1.268 16 H -0.287 1.287 17 H -0.281 1.281 18 C -0.097 4.097 19 C -0.110 4.110 20 C -0.025 4.025 21 H 0.101 0.899 22 H 0.047 0.953 23 H 0.028 0.972 24 H 0.070 0.930 25 H 0.126 0.874 26 H 0.200 0.800 27 H 0.252 0.748 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.764 -4.803 9.377 11.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.013 3.987 3 N -0.205 5.205 4 C -0.113 4.113 5 C -0.291 4.291 6 C -0.094 4.094 7 N -0.065 5.065 8 C 0.091 3.909 9 H 0.018 0.982 10 C -0.592 4.592 11 H 0.068 0.932 12 C -0.177 4.177 13 N -0.493 5.493 14 Si 0.768 3.232 15 H -0.193 1.193 16 H -0.212 1.212 17 H -0.207 1.207 18 C -0.135 4.135 19 C -0.148 4.148 20 C -0.063 4.063 21 H 0.120 0.880 22 H 0.066 0.934 23 H 0.047 0.953 24 H 0.089 0.911 25 H 0.144 0.856 26 H 0.217 0.783 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.874 -5.723 8.423 10.895 hybrid contribution -0.728 0.405 -0.208 0.859 sum 3.145 -5.318 8.215 10.279 Atomic orbital electron populations 1.21934 0.94983 1.03088 1.01089 1.21664 0.95317 0.77640 1.04076 1.49848 1.36979 1.11249 1.22384 1.22389 0.97031 0.94478 0.97360 1.20648 1.09693 0.96629 1.02157 1.23322 0.94565 0.95868 0.95625 1.78111 1.21230 0.97498 1.09657 1.17325 0.95126 0.86518 0.91906 0.98249 1.21227 0.98967 1.09363 1.29611 0.93196 1.25614 1.01027 0.94807 0.96243 1.70134 1.37242 1.12167 1.29723 0.85889 0.81595 0.77958 0.77732 1.19342 1.21228 1.20674 1.21496 0.96559 0.97564 0.97920 1.21546 0.96318 0.98318 0.98582 1.19910 0.97297 0.92597 0.96492 0.88039 0.93378 0.95258 0.91150 0.85647 0.78305 0.93885 0.92494 0.93537 0.93488 0.89579 0.91368 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.78 10.10 71.98 0.73 -4.05 16 2 C 0.13 4.09 7.23 86.38 0.62 4.71 16 3 N -0.42 -17.59 3.69 -348.45 -1.29 -18.87 16 4 C 0.03 1.14 11.41 83.33 0.95 2.09 16 5 C -0.28 -11.72 5.89 -20.10 -0.12 -11.84 16 6 C 0.08 4.04 6.25 43.44 0.27 4.31 16 7 N -0.25 -13.38 9.42 -47.14 -0.44 -13.82 16 8 C 0.11 6.06 2.48 -12.08 -0.03 6.03 16 9 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 10 C -0.55 -32.71 8.56 25.60 0.22 -32.49 16 11 H 0.05 2.89 7.75 -2.91 -0.02 2.87 16 12 C 0.03 1.58 5.12 84.65 0.43 2.02 16 13 N -0.86 -52.69 10.55 21.45 0.23 -52.46 16 14 Si 0.94 46.61 29.54 68.60 2.03 48.64 16 15 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 16 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 17 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 18 C -0.10 -4.18 5.13 30.73 0.16 -4.02 16 19 C -0.11 -3.77 5.87 30.74 0.18 -3.59 16 20 C -0.02 -0.81 6.28 30.04 0.19 -0.62 16 21 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 22 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.13 2.59 8.07 -2.39 -0.02 2.57 16 26 H 0.20 4.98 8.06 -2.91 -0.02 4.95 16 27 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 28 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16 30 H 0.05 1.68 8.10 -2.39 -0.02 1.67 16 31 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -73.44 270.47 5.20 -68.24 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: 1.07 Total: 5.74 kcal Atomic # 6 Polarization: -41.07 SS G_CDS: 3.60 Total: -37.46 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -1.50 Total: -85.16 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -73.44 5.20 -68.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261190966.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.922 kcal (2) G-P(sol) polarization free energy of solvation -73.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds