Wall clock time and date at job start Mon Mar 30 2020 03:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46781 * 2 1 4 4 C 1.35197 * 126.00466 * 124.97807 * 3 2 1 5 5 C 1.34566 * 107.61784 * 180.02562 * 4 3 2 6 6 C 1.40497 * 108.03822 * 359.89380 * 5 4 3 7 7 N 1.30121 * 108.22582 * 0.13437 * 6 5 4 8 8 C 1.50950 * 123.48451 * 180.16246 * 6 5 4 9 9 H 1.08995 * 109.71543 * 256.88905 * 8 6 5 10 10 C 1.50694 * 109.71589 * 136.28767 * 8 6 5 11 11 H 1.08000 * 120.00563 * 240.00087 * 10 8 6 12 12 C 1.37885 * 119.99902 * 59.99924 * 10 8 6 13 13 N 1.31516 * 119.99913 * 0.02562 * 12 10 8 14 14 Si 1.86805 * 119.99854 * 179.72538 * 12 10 8 15 15 H 1.48504 * 109.47032 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46816 * 120.00323 * 14 12 10 17 17 H 1.48495 * 109.46630 * 240.00111 * 14 12 10 18 18 C 1.53370 * 108.20556 * 16.60998 * 8 6 5 19 19 C 1.53027 * 109.75083 * 309.35235 * 18 8 6 20 20 C 1.50887 * 128.32799 * 179.71464 * 5 4 3 21 21 H 1.09000 * 109.47041 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47566 * 299.99994 * 1 2 3 23 23 H 1.09001 * 109.47294 * 60.00776 * 1 2 3 24 24 H 1.08998 * 109.46989 * 239.99559 * 2 1 3 25 25 H 1.08998 * 109.46970 * 119.99612 * 2 1 3 26 26 H 1.07998 * 126.19291 * 359.97438 * 4 3 2 27 27 H 0.97001 * 119.99646 * 180.02562 * 13 12 10 28 28 H 1.09001 * 109.42871 * 69.43590 * 18 8 6 29 29 H 1.09004 * 109.42635 * 189.26306 * 18 8 6 30 30 H 1.08999 * 109.42714 * 311.64379 * 19 18 8 31 31 H 1.09000 * 109.42530 * 191.80460 * 19 18 8 32 32 H 1.09005 * 109.71455 * 316.40664 * 20 5 4 33 33 H 1.08994 * 109.72010 * 77.01490 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8743 1.9216 0.8961 5 6 3.0700 3.2068 0.5487 6 6 2.3094 3.4666 -0.6037 7 7 1.6799 2.3757 -0.9303 8 6 2.2759 4.8084 -1.2944 9 1 1.3479 5.3249 -1.0495 10 6 2.3716 4.6150 -2.7858 11 1 3.1917 5.0526 -3.3357 12 6 1.4122 3.8791 -3.4486 13 7 0.4132 3.3465 -2.7791 14 14 1.5266 3.6458 -5.2984 15 1 2.7318 4.3452 -5.8119 16 1 1.6255 2.1971 -5.6094 17 1 0.3139 4.2091 -5.9443 18 6 3.4727 5.6311 -0.8015 19 6 3.5093 5.6254 0.7283 20 6 3.9332 4.2395 1.2307 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8901 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.3197 1.4140 1.7389 27 1 -0.2615 2.8286 -3.2453 28 1 4.3949 5.1969 -1.1877 29 1 3.3790 6.6569 -1.1581 30 1 2.5188 5.8642 1.1156 31 1 4.2235 6.3715 1.0767 32 1 3.7931 4.1810 2.3101 33 1 4.9805 4.0632 0.9857 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261190967.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:38 Heat of formation + Delta-G solvation = 70.755154 kcal Electronic energy + Delta-G solvation = -15359.539953 eV Core-core repulsion = 13000.692017 eV Total energy + Delta-G solvation = -2358.847935 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.14380 -35.96801 -32.96723 -32.86893 -30.21691 -28.38157 -27.55585 -24.72357 -23.34407 -21.18779 -20.51461 -19.44697 -17.55084 -16.25399 -15.53713 -14.73487 -14.41649 -13.81540 -13.60662 -13.30273 -12.67912 -12.34729 -12.09905 -11.76794 -11.71074 -11.36444 -11.12790 -10.89057 -10.79312 -10.65706 -10.35316 -10.03543 -9.70079 -9.36385 -9.31706 -8.48666 -8.18901 -7.70964 -7.12407 -5.78442 -3.85342 3.09268 3.39003 3.46440 3.50199 3.64615 4.27056 4.59849 5.13910 5.48449 5.52699 5.58544 5.64395 5.76811 5.82648 5.85619 5.96402 6.20423 6.34675 6.45544 6.57555 6.60733 6.66974 6.76173 6.86528 6.87756 7.12388 7.25808 7.45363 7.82621 8.00582 8.15961 8.28657 8.50536 9.09391 9.41755 9.76747 11.25094 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.020304 B = 0.014682 C = 0.009172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.681271 B = 1906.653331 C = 3052.026152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.143 3.857 3 N -0.417 5.417 4 C 0.017 3.983 5 C -0.256 4.256 6 C 0.111 3.889 7 N -0.191 5.191 8 C 0.119 3.881 9 H 0.040 0.960 10 C -0.529 4.529 11 H 0.056 0.944 12 C 0.071 3.929 13 N -0.836 5.836 14 Si 0.883 3.117 15 H -0.275 1.275 16 H -0.288 1.288 17 H -0.286 1.286 18 C -0.104 4.104 19 C -0.116 4.116 20 C -0.029 4.029 21 H 0.059 0.941 22 H 0.053 0.947 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.147 0.853 27 H 0.256 0.744 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.156 -3.585 7.772 9.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.021 3.979 3 N -0.200 5.200 4 C -0.126 4.126 5 C -0.269 4.269 6 C -0.060 4.060 7 N -0.008 5.008 8 C 0.099 3.901 9 H 0.057 0.943 10 C -0.568 4.568 11 H 0.075 0.925 12 C -0.135 4.135 13 N -0.471 5.471 14 Si 0.712 3.288 15 H -0.200 1.200 16 H -0.214 1.214 17 H -0.212 1.212 18 C -0.142 4.142 19 C -0.154 4.154 20 C -0.068 4.068 21 H 0.078 0.922 22 H 0.072 0.928 23 H 0.096 0.904 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.164 0.836 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.101 -4.447 6.943 8.508 hybrid contribution 0.613 -0.196 -0.340 0.727 sum 2.713 -4.643 6.603 8.516 Atomic orbital electron populations 1.22003 0.94672 1.01235 1.03920 1.21229 0.95478 0.79654 1.01555 1.49601 1.36892 1.10373 1.23095 1.21634 0.98621 0.95018 0.97339 1.20166 1.09513 0.94711 1.02493 1.23346 0.93315 0.96947 0.92429 1.78311 1.19325 0.95774 1.07376 1.17390 0.93451 0.85294 0.94009 0.94265 1.20961 1.10051 1.34642 0.91110 0.92535 1.24935 0.95665 0.95502 0.97367 1.69971 1.11340 1.31634 1.34154 0.86683 0.77747 0.77582 0.86805 1.19955 1.21402 1.21232 1.21600 1.00086 0.99573 0.92964 1.21583 1.00402 0.95625 0.97752 1.19824 0.96913 0.92885 0.97155 0.92227 0.92775 0.90361 0.91348 0.90702 0.83590 0.93424 0.92930 0.92937 0.92531 0.93335 0.93053 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 10.10 37.16 0.38 -2.18 16 2 C 0.14 2.37 7.23 -4.04 -0.03 2.34 16 3 N -0.42 -8.97 3.69 -61.50 -0.23 -9.20 16 4 C 0.02 0.34 11.41 -17.37 -0.20 0.14 16 5 C -0.26 -5.58 5.89 -104.98 -0.62 -6.20 16 6 C 0.11 2.87 6.25 -82.34 -0.51 2.36 16 7 N -0.19 -5.07 9.43 33.75 0.32 -4.75 16 8 C 0.12 3.10 2.48 -92.61 -0.23 2.87 16 9 H 0.04 1.11 8.14 -51.93 -0.42 0.68 16 10 C -0.53 -15.04 8.56 -34.44 -0.29 -15.33 16 11 H 0.06 1.59 7.75 -52.49 -0.41 1.18 16 12 C 0.07 2.03 5.12 -17.82 -0.09 1.94 16 13 N -0.84 -24.54 10.55 55.43 0.58 -23.95 16 14 Si 0.88 22.06 29.54 -169.99 -5.02 17.04 16 15 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 C -0.10 -2.22 5.12 -26.53 -0.14 -2.36 16 19 C -0.12 -2.10 5.87 -26.52 -0.16 -2.25 16 20 C -0.03 -0.53 6.28 -27.59 -0.17 -0.70 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 24 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 25 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 26 H 0.15 2.25 8.06 -52.49 -0.42 1.83 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.05 1.14 8.08 -51.93 -0.42 0.72 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 270.47 15.07 4.08 4.08 Total: -1.00 -31.83 270.47 -7.36 -39.19 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -5.03 Total: -3.03 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -2.07 Total: -19.38 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.68 Total: -37.90 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.83 -7.36 -39.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261190967.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.945 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds