Wall clock time and date at job start Mon Mar 30 2020 03:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46781 * 2 1 4 4 C 1.35197 * 126.00466 * 124.97807 * 3 2 1 5 5 C 1.34566 * 107.61784 * 180.02562 * 4 3 2 6 6 C 1.40497 * 108.03822 * 359.89380 * 5 4 3 7 7 N 1.30121 * 108.22582 * 0.13437 * 6 5 4 8 8 C 1.50950 * 123.48451 * 180.16246 * 6 5 4 9 9 H 1.08995 * 109.71543 * 256.88905 * 8 6 5 10 10 C 1.50694 * 109.71589 * 136.28767 * 8 6 5 11 11 H 1.08000 * 120.00563 * 240.00087 * 10 8 6 12 12 C 1.37885 * 119.99902 * 59.99924 * 10 8 6 13 13 N 1.31516 * 119.99913 * 0.02562 * 12 10 8 14 14 Si 1.86805 * 119.99854 * 179.72538 * 12 10 8 15 15 H 1.48504 * 109.47032 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46816 * 120.00323 * 14 12 10 17 17 H 1.48495 * 109.46630 * 240.00111 * 14 12 10 18 18 C 1.53370 * 108.20556 * 16.60998 * 8 6 5 19 19 C 1.53027 * 109.75083 * 309.35235 * 18 8 6 20 20 C 1.50887 * 128.32799 * 179.71464 * 5 4 3 21 21 H 1.09000 * 109.47041 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47566 * 299.99994 * 1 2 3 23 23 H 1.09001 * 109.47294 * 60.00776 * 1 2 3 24 24 H 1.08998 * 109.46989 * 239.99559 * 2 1 3 25 25 H 1.08998 * 109.46970 * 119.99612 * 2 1 3 26 26 H 1.07998 * 126.19291 * 359.97438 * 4 3 2 27 27 H 0.97001 * 119.99646 * 180.02562 * 13 12 10 28 28 H 1.09001 * 109.42871 * 69.43590 * 18 8 6 29 29 H 1.09004 * 109.42635 * 189.26306 * 18 8 6 30 30 H 1.08999 * 109.42714 * 311.64379 * 19 18 8 31 31 H 1.09000 * 109.42530 * 191.80460 * 19 18 8 32 32 H 1.09005 * 109.71455 * 316.40664 * 20 5 4 33 33 H 1.08994 * 109.72010 * 77.01490 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8743 1.9216 0.8961 5 6 3.0700 3.2068 0.5487 6 6 2.3094 3.4666 -0.6037 7 7 1.6799 2.3757 -0.9303 8 6 2.2759 4.8084 -1.2944 9 1 1.3479 5.3249 -1.0495 10 6 2.3716 4.6150 -2.7858 11 1 3.1917 5.0526 -3.3357 12 6 1.4122 3.8791 -3.4486 13 7 0.4132 3.3465 -2.7791 14 14 1.5266 3.6458 -5.2984 15 1 2.7318 4.3452 -5.8119 16 1 1.6255 2.1971 -5.6094 17 1 0.3139 4.2091 -5.9443 18 6 3.4727 5.6311 -0.8015 19 6 3.5093 5.6254 0.7283 20 6 3.9332 4.2395 1.2307 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8901 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.3197 1.4140 1.7389 27 1 -0.2615 2.8286 -3.2453 28 1 4.3949 5.1969 -1.1877 29 1 3.3790 6.6569 -1.1581 30 1 2.5188 5.8642 1.1156 31 1 4.2235 6.3715 1.0767 32 1 3.7931 4.1810 2.3101 33 1 4.9805 4.0632 0.9857 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261190967.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:38 Heat of formation + Delta-G solvation = 51.576792 kcal Electronic energy + Delta-G solvation = -15360.371589 eV Core-core repulsion = 13000.692017 eV Total energy + Delta-G solvation = -2359.679572 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.80048 -37.60592 -34.85231 -34.39154 -32.06203 -29.95951 -29.27315 -26.57431 -24.97446 -22.75463 -22.17289 -21.07373 -19.24064 -18.28250 -17.13834 -16.49800 -16.22477 -15.35014 -15.10731 -14.79886 -14.45705 -14.10970 -13.56276 -13.45560 -13.21182 -12.99979 -12.82265 -12.60290 -12.53227 -12.26349 -12.10046 -11.65863 -11.44328 -11.28727 -11.06775 -10.39288 -10.20447 -9.51983 -8.72987 -7.94311 -6.07924 1.37636 1.38973 1.49876 1.52666 2.18117 2.40250 2.55557 3.34367 3.83785 4.14764 4.23058 4.33333 4.35856 4.38658 4.40587 4.71027 4.80284 4.90095 4.97801 5.01650 5.13149 5.15338 5.23065 5.30336 5.39334 5.47998 5.65701 5.71177 5.81523 5.94591 6.33153 6.45103 6.73384 6.94602 7.55534 7.66606 9.07310 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.020304 B = 0.014682 C = 0.009172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.681271 B = 1906.653331 C = 3052.026152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.133 3.867 3 N -0.421 5.421 4 C 0.031 3.969 5 C -0.279 4.279 6 C 0.077 3.923 7 N -0.247 5.247 8 C 0.111 3.889 9 H 0.000 1.000 10 C -0.551 4.551 11 H 0.050 0.950 12 C 0.025 3.975 13 N -0.857 5.857 14 Si 0.943 3.057 15 H -0.269 1.269 16 H -0.290 1.290 17 H -0.279 1.279 18 C -0.097 4.097 19 C -0.110 4.110 20 C -0.025 4.025 21 H 0.099 0.901 22 H 0.049 0.951 23 H 0.031 0.969 24 H 0.066 0.934 25 H 0.125 0.875 26 H 0.200 0.800 27 H 0.251 0.749 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.645 -4.710 9.473 11.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.012 3.988 3 N -0.205 5.205 4 C -0.113 4.113 5 C -0.291 4.291 6 C -0.094 4.094 7 N -0.065 5.065 8 C 0.091 3.909 9 H 0.017 0.983 10 C -0.590 4.590 11 H 0.068 0.932 12 C -0.179 4.179 13 N -0.492 5.492 14 Si 0.770 3.230 15 H -0.193 1.193 16 H -0.216 1.216 17 H -0.205 1.205 18 C -0.135 4.135 19 C -0.148 4.148 20 C -0.063 4.063 21 H 0.118 0.882 22 H 0.068 0.932 23 H 0.051 0.949 24 H 0.085 0.915 25 H 0.143 0.857 26 H 0.217 0.783 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.592 -5.561 8.643 10.887 hybrid contribution 0.110 0.080 -0.836 0.847 sum 3.703 -5.481 7.807 10.233 Atomic orbital electron populations 1.21915 0.94619 1.03017 1.01361 1.21668 0.95627 0.77619 1.03890 1.49845 1.36913 1.11248 1.22457 1.22382 0.96879 0.94468 0.97525 1.20647 1.10074 0.96670 1.01720 1.23322 0.95046 0.96549 0.94448 1.78114 1.20998 0.97328 1.10054 1.17333 0.93613 0.86723 0.93247 0.98251 1.21286 1.09951 1.34826 0.92901 0.93180 1.25637 0.95504 0.95373 1.01341 1.70156 1.11748 1.31961 1.35380 0.85748 0.78038 0.77154 0.82083 1.19290 1.21644 1.20459 1.21495 0.97501 0.98723 0.95814 1.21541 1.01061 0.97369 0.94780 1.19908 0.96757 0.91092 0.98534 0.88225 0.93210 0.94923 0.91546 0.85668 0.78319 0.93925 0.93513 0.92505 0.93520 0.89577 0.89927 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.66 10.10 71.98 0.73 -3.93 16 2 C 0.13 4.08 7.23 86.38 0.62 4.70 16 3 N -0.42 -17.61 3.69 -348.47 -1.29 -18.89 16 4 C 0.03 1.14 11.41 83.33 0.95 2.09 16 5 C -0.28 -11.71 5.89 -20.10 -0.12 -11.83 16 6 C 0.08 4.04 6.25 43.44 0.27 4.31 16 7 N -0.25 -13.38 9.43 -47.13 -0.44 -13.82 16 8 C 0.11 6.03 2.48 -12.08 -0.03 6.00 16 9 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 10 C -0.55 -32.56 8.56 25.60 0.22 -32.34 16 11 H 0.05 2.91 7.75 -2.91 -0.02 2.89 16 12 C 0.03 1.48 5.12 84.66 0.43 1.91 16 13 N -0.86 -52.57 10.55 21.45 0.23 -52.35 16 14 Si 0.94 46.63 29.54 68.60 2.03 48.66 16 15 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 16 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 17 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 18 C -0.10 -4.17 5.12 30.73 0.16 -4.02 16 19 C -0.11 -3.77 5.87 30.73 0.18 -3.59 16 20 C -0.02 -0.81 6.28 30.04 0.19 -0.62 16 21 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 22 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 23 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.13 2.60 8.07 -2.39 -0.02 2.58 16 26 H 0.20 4.98 8.06 -2.91 -0.02 4.96 16 27 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 28 H 0.05 2.02 8.08 -2.39 -0.02 2.00 16 29 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16 31 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -73.36 270.47 5.20 -68.17 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: 1.07 Total: 5.54 kcal Atomic # 6 Polarization: -40.91 SS G_CDS: 3.60 Total: -37.31 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -1.50 Total: -85.06 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -73.36 5.20 -68.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261190967.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.742 kcal (2) G-P(sol) polarization free energy of solvation -73.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds