Wall clock time and date at job start Mon Mar 30 2020 03:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47158 * 2 1 4 4 N 1.40295 * 126.09466 * 275.58324 * 3 2 1 5 5 C 1.31073 * 108.26902 * 179.97438 * 4 3 2 6 6 C 1.39290 * 108.08067 * 0.02562 * 5 4 3 7 7 C 1.34332 * 126.09107 * 95.61061 * 3 2 1 8 8 C 1.50832 * 128.03096 * 0.11124 * 7 3 2 9 9 H 1.08993 * 109.68191 * 283.15002 * 8 7 3 10 10 C 1.50700 * 109.68185 * 43.70825 * 8 7 3 11 11 H 1.08002 * 120.00121 * 5.50431 * 10 8 7 12 12 C 1.37874 * 119.99750 * 185.50809 * 10 8 7 13 13 N 1.31516 * 120.00404 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 119.99997 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47108 * 59.99961 * 14 12 10 16 16 H 1.48500 * 109.47135 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47288 * 299.99953 * 14 12 10 18 18 C 1.53361 * 108.37896 * 163.42769 * 8 7 3 19 19 C 1.53134 * 109.50124 * 49.94563 * 18 8 7 20 20 C 1.50846 * 127.90123 * 180.15324 * 6 5 4 21 21 H 1.08997 * 109.47224 * 59.99807 * 1 2 3 22 22 H 1.09000 * 109.47327 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46979 * 299.99434 * 1 2 3 24 24 H 1.08999 * 109.46979 * 240.00566 * 2 1 3 25 25 H 1.09002 * 109.47556 * 120.00524 * 2 1 3 26 26 H 1.07997 * 125.95864 * 180.02562 * 5 4 3 27 27 H 0.97001 * 120.00419 * 179.97438 * 13 12 10 28 28 H 1.09000 * 109.46460 * 169.94928 * 18 8 7 29 29 H 1.09002 * 109.46830 * 289.92690 * 18 8 7 30 30 H 1.08998 * 109.46203 * 169.69691 * 19 18 8 31 31 H 1.09004 * 109.46481 * 49.72070 * 19 18 8 32 32 H 1.09001 * 109.67882 * 283.07133 * 20 6 5 33 33 H 1.08999 * 109.67873 * 43.62686 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1898 2.1972 -1.1283 5 6 2.6420 3.3608 -0.7289 6 6 2.7721 3.3214 0.6574 7 6 2.3821 2.0918 1.0803 8 6 2.3805 1.6547 2.5239 9 1 1.3615 1.6686 2.9105 10 6 2.9467 0.2625 2.6333 11 1 3.3581 -0.2233 1.7608 12 6 2.9395 -0.3912 3.8472 13 7 2.4381 0.2001 4.9096 14 14 3.6407 -2.1173 3.9827 15 1 5.0733 -2.1016 3.5922 16 1 3.5141 -2.5945 5.3833 17 1 2.8916 -3.0283 3.0803 18 6 3.2505 2.6306 3.3256 19 6 2.8312 4.0688 3.0079 20 6 3.2513 4.4188 1.5747 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 2.8735 4.2031 -1.3639 27 1 2.4326 -0.2600 5.7636 28 1 3.1209 2.4415 4.3912 29 1 4.2972 2.4894 3.0565 30 1 3.3168 4.7511 3.7055 31 1 1.7492 4.1612 3.1034 32 1 4.3370 4.4969 1.5176 33 1 2.7986 5.3660 1.2816 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261196531.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:20 Heat of formation + Delta-G solvation = 53.655529 kcal Electronic energy + Delta-G solvation = -15441.184511 eV Core-core repulsion = 13081.595080 eV Total energy + Delta-G solvation = -2359.589431 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.61633 -35.76119 -34.19020 -32.47511 -30.13365 -28.38640 -27.96554 -25.15619 -22.86963 -21.83835 -20.81708 -19.62519 -17.68056 -16.77758 -15.55350 -14.62035 -14.51574 -13.80604 -13.56700 -13.26877 -12.70310 -12.52885 -12.39053 -12.11460 -11.87813 -11.61412 -11.11491 -11.01713 -10.85541 -10.66069 -10.47417 -10.07153 -9.80200 -9.60113 -9.36536 -9.09221 -8.55078 -8.27548 -7.28835 -6.18973 -4.25484 2.85181 3.20554 3.26914 3.29391 3.40729 3.64540 4.29038 5.10626 5.33066 5.62412 5.67113 5.69395 5.84369 5.90470 5.95320 6.10183 6.26759 6.31702 6.46887 6.55215 6.57722 6.68653 6.70618 6.75705 7.01230 7.07402 7.33091 7.51297 7.57100 7.74115 7.82858 8.04088 8.17413 8.62298 8.76349 9.38601 10.88071 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.024995 B = 0.012724 C = 0.009436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.938544 B = 2199.972512 C = 2966.775431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.112 3.888 3 N -0.355 5.355 4 N -0.336 5.336 5 C 0.043 3.957 6 C -0.282 4.282 7 C 0.144 3.856 8 C 0.103 3.897 9 H 0.051 0.949 10 C -0.525 4.525 11 H 0.060 0.940 12 C 0.071 3.929 13 N -0.881 5.881 14 Si 0.890 3.110 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.275 1.275 18 C -0.097 4.097 19 C -0.122 4.122 20 C -0.028 4.028 21 H 0.052 0.948 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.132 0.868 26 H 0.167 0.833 27 H 0.265 0.735 28 H 0.081 0.919 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.994 2.858 -4.427 5.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.009 4.009 3 N -0.135 5.135 4 N -0.157 5.157 5 C -0.142 4.142 6 C -0.293 4.293 7 C 0.013 3.987 8 C 0.083 3.917 9 H 0.068 0.932 10 C -0.563 4.563 11 H 0.078 0.922 12 C -0.132 4.132 13 N -0.517 5.517 14 Si 0.717 3.283 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.200 1.200 18 C -0.135 4.135 19 C -0.160 4.160 20 C -0.066 4.066 21 H 0.071 0.929 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.149 0.851 26 H 0.184 0.816 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.448 1.964 -5.263 5.802 hybrid contribution 0.638 -0.437 0.675 1.027 sum -0.810 1.527 -4.588 4.903 Atomic orbital electron populations 1.22073 0.95504 1.02058 1.02282 1.22101 0.94570 0.78687 1.05563 1.48199 1.49986 1.11544 1.03772 1.77266 1.25903 1.03167 1.09396 1.23294 1.00258 0.95939 0.94666 1.19829 1.18492 0.97490 0.93533 1.21916 0.93620 0.90471 0.92644 1.17701 0.97385 0.94538 0.82035 0.93160 1.20942 1.41241 0.99010 0.95114 0.92206 1.24927 0.94721 0.97928 0.95665 1.69901 1.44179 1.37610 1.00046 0.86679 0.79892 0.84346 0.77337 1.20079 1.21055 1.20043 1.21569 0.98844 0.90959 1.02159 1.21722 1.00398 0.98796 0.95072 1.19832 0.98919 0.94449 0.93424 0.92920 0.91368 0.91939 0.90881 0.85064 0.81563 0.92529 0.90049 0.93670 0.93329 0.92888 0.92716 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 10.24 37.16 0.38 -2.29 16 2 C 0.11 2.13 6.78 -4.05 -0.03 2.10 16 3 N -0.36 -7.70 3.60 -57.14 -0.21 -7.91 16 4 N -0.34 -7.13 12.59 30.54 0.38 -6.75 16 5 C 0.04 0.83 12.00 -17.48 -0.21 0.62 16 6 C -0.28 -5.85 5.91 -105.05 -0.62 -6.47 16 7 C 0.14 3.25 6.17 -82.33 -0.51 2.75 16 8 C 0.10 2.48 2.26 -92.67 -0.21 2.27 16 9 H 0.05 1.32 8.14 -51.93 -0.42 0.89 16 10 C -0.53 -13.30 6.58 -34.44 -0.23 -13.52 16 11 H 0.06 1.52 6.24 -52.49 -0.33 1.19 16 12 C 0.07 1.82 5.34 -17.82 -0.10 1.73 16 13 N -0.88 -23.39 11.96 55.43 0.66 -22.72 16 14 Si 0.89 19.88 29.54 -169.99 -5.02 14.86 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 18 C -0.10 -2.18 4.94 -26.47 -0.13 -2.31 16 19 C -0.12 -2.32 5.90 -26.45 -0.16 -2.47 16 20 C -0.03 -0.50 6.28 -27.60 -0.17 -0.67 16 21 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.13 2.70 4.64 -51.93 -0.24 2.46 16 26 H 0.17 2.58 8.06 -52.49 -0.42 2.16 16 27 H 0.26 6.75 8.31 -40.82 -0.34 6.42 16 28 H 0.08 1.98 6.90 -51.93 -0.36 1.62 16 29 H 0.04 1.05 8.08 -51.93 -0.42 0.63 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.05 1.01 8.11 -51.93 -0.42 0.59 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 266.89 15.07 4.02 4.02 Total: -1.00 -27.56 266.89 -6.84 -34.40 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -4.71 Total: 2.38 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -1.98 Total: -18.29 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.84 Total: -37.38 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.56 -6.84 -34.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261196531.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.058 kcal (2) G-P(sol) polarization free energy of solvation -27.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds