Wall clock time and date at job start Mon Mar 30 2020 03:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47158 * 2 1 4 4 N 1.40295 * 126.09466 * 275.58324 * 3 2 1 5 5 C 1.31073 * 108.26902 * 179.97438 * 4 3 2 6 6 C 1.39290 * 108.08067 * 0.02562 * 5 4 3 7 7 C 1.34332 * 126.09107 * 95.61061 * 3 2 1 8 8 C 1.50832 * 128.03096 * 0.11124 * 7 3 2 9 9 H 1.08993 * 109.68191 * 283.15002 * 8 7 3 10 10 C 1.50700 * 109.68185 * 43.70825 * 8 7 3 11 11 H 1.08002 * 120.00121 * 5.50431 * 10 8 7 12 12 C 1.37874 * 119.99750 * 185.50809 * 10 8 7 13 13 N 1.31516 * 120.00404 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 119.99997 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47108 * 59.99961 * 14 12 10 16 16 H 1.48500 * 109.47135 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47288 * 299.99953 * 14 12 10 18 18 C 1.53361 * 108.37896 * 163.42769 * 8 7 3 19 19 C 1.53134 * 109.50124 * 49.94563 * 18 8 7 20 20 C 1.50846 * 127.90123 * 180.15324 * 6 5 4 21 21 H 1.08997 * 109.47224 * 59.99807 * 1 2 3 22 22 H 1.09000 * 109.47327 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46979 * 299.99434 * 1 2 3 24 24 H 1.08999 * 109.46979 * 240.00566 * 2 1 3 25 25 H 1.09002 * 109.47556 * 120.00524 * 2 1 3 26 26 H 1.07997 * 125.95864 * 180.02562 * 5 4 3 27 27 H 0.97001 * 120.00419 * 179.97438 * 13 12 10 28 28 H 1.09000 * 109.46460 * 169.94928 * 18 8 7 29 29 H 1.09002 * 109.46830 * 289.92690 * 18 8 7 30 30 H 1.08998 * 109.46203 * 169.69691 * 19 18 8 31 31 H 1.09004 * 109.46481 * 49.72070 * 19 18 8 32 32 H 1.09001 * 109.67882 * 283.07133 * 20 6 5 33 33 H 1.08999 * 109.67873 * 43.62686 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1898 2.1972 -1.1283 5 6 2.6420 3.3608 -0.7289 6 6 2.7721 3.3214 0.6574 7 6 2.3821 2.0918 1.0803 8 6 2.3805 1.6547 2.5239 9 1 1.3615 1.6686 2.9105 10 6 2.9467 0.2625 2.6333 11 1 3.3581 -0.2233 1.7608 12 6 2.9395 -0.3912 3.8472 13 7 2.4381 0.2001 4.9096 14 14 3.6407 -2.1173 3.9827 15 1 5.0733 -2.1016 3.5922 16 1 3.5141 -2.5945 5.3833 17 1 2.8916 -3.0283 3.0803 18 6 3.2505 2.6306 3.3256 19 6 2.8312 4.0688 3.0079 20 6 3.2513 4.4188 1.5747 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 2.8735 4.2031 -1.3639 27 1 2.4326 -0.2600 5.7636 28 1 3.1209 2.4415 4.3912 29 1 4.2972 2.4894 3.0565 30 1 3.3168 4.7511 3.7055 31 1 1.7492 4.1612 3.1034 32 1 4.3370 4.4969 1.5176 33 1 2.7986 5.3660 1.2816 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261196531.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:20 Heat of formation + Delta-G solvation = 38.869689 kcal Electronic energy + Delta-G solvation = -15441.825673 eV Core-core repulsion = 13081.595080 eV Total energy + Delta-G solvation = -2360.230593 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.22405 -37.45621 -35.79536 -34.26450 -31.77847 -30.05078 -29.58151 -26.96289 -24.39982 -23.56389 -22.46803 -21.17908 -19.35074 -18.67353 -17.27047 -16.37743 -16.15284 -15.35226 -15.07323 -14.81165 -14.46089 -14.16897 -14.06213 -13.71767 -13.39716 -13.06732 -12.86419 -12.72420 -12.58786 -12.21882 -12.13965 -11.84322 -11.46327 -11.20363 -11.12842 -10.94347 -10.46860 -9.93245 -8.90581 -8.15267 -6.27542 1.20519 1.41806 1.44098 1.50407 1.85897 2.07376 2.41246 3.13512 3.83634 4.08805 4.21887 4.25959 4.33502 4.40064 4.48961 4.60880 4.75816 4.84452 4.95379 4.98847 5.08067 5.11239 5.13608 5.19945 5.32178 5.45512 5.57577 5.68593 5.86310 5.92648 6.06185 6.22486 6.41627 6.75169 7.05074 7.38885 8.90941 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.024995 B = 0.012724 C = 0.009436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.938544 B = 2199.972512 C = 2966.775431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.105 3.895 3 N -0.365 5.365 4 N -0.349 5.349 5 C 0.047 3.953 6 C -0.286 4.286 7 C 0.110 3.890 8 C 0.107 3.893 9 H 0.016 0.984 10 C -0.531 4.531 11 H 0.055 0.945 12 C 0.029 3.971 13 N -0.908 5.908 14 Si 0.947 3.053 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.265 1.265 18 C -0.090 4.090 19 C -0.116 4.116 20 C -0.024 4.024 21 H 0.057 0.943 22 H 0.096 0.904 23 H 0.040 0.960 24 H 0.090 0.910 25 H 0.111 0.889 26 H 0.209 0.791 27 H 0.265 0.735 28 H 0.056 0.944 29 H 0.032 0.968 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.586 3.500 -5.677 6.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 N -0.145 5.145 4 N -0.170 5.170 5 C -0.137 4.137 6 C -0.297 4.297 7 C -0.020 4.020 8 C 0.087 3.913 9 H 0.034 0.966 10 C -0.569 4.569 11 H 0.073 0.927 12 C -0.172 4.172 13 N -0.546 5.546 14 Si 0.772 3.228 15 H -0.202 1.202 16 H -0.209 1.209 17 H -0.189 1.189 18 C -0.129 4.129 19 C -0.153 4.153 20 C -0.062 4.062 21 H 0.076 0.924 22 H 0.115 0.885 23 H 0.060 0.940 24 H 0.108 0.892 25 H 0.129 0.871 26 H 0.226 0.774 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.045 2.600 -6.521 7.097 hybrid contribution 0.504 -0.612 1.025 1.296 sum -0.541 1.987 -5.496 5.869 Atomic orbital electron populations 1.21991 0.93741 1.03689 1.01371 1.22186 0.96061 0.77985 1.05299 1.48437 1.50201 1.12230 1.03641 1.77229 1.26423 1.03971 1.09420 1.23934 0.98772 0.96381 0.94586 1.20288 1.17364 0.97321 0.94706 1.21851 0.95990 0.91966 0.92216 1.17490 0.95557 0.94631 0.83615 0.96579 1.21139 1.40874 0.99899 0.94983 0.92705 1.25590 0.95080 1.01200 0.95364 1.70016 1.45323 1.38910 1.00365 0.85778 0.79051 0.80571 0.77363 1.20180 1.20913 1.18934 1.21405 0.97782 0.93432 1.00266 1.21652 1.00227 0.96591 0.96878 1.19907 0.99826 0.94845 0.91648 0.92432 0.88499 0.94036 0.89164 0.87095 0.77414 0.92617 0.92573 0.94868 0.90758 0.93494 0.91499 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.88 10.24 71.98 0.74 -4.14 16 2 C 0.11 3.98 6.78 86.38 0.59 4.57 16 3 N -0.36 -15.66 3.60 -334.68 -1.21 -16.87 16 4 N -0.35 -14.19 12.59 -57.28 -0.72 -14.91 16 5 C 0.05 1.70 12.00 85.06 1.02 2.72 16 6 C -0.29 -11.31 5.91 -20.14 -0.12 -11.43 16 7 C 0.11 4.97 6.17 41.64 0.26 5.22 16 8 C 0.11 5.29 2.26 -12.12 -0.03 5.27 16 9 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 10 C -0.53 -27.56 6.58 25.60 0.17 -27.40 16 11 H 0.05 2.85 6.24 -2.91 -0.02 2.83 16 12 C 0.03 1.48 5.34 84.65 0.45 1.93 16 13 N -0.91 -49.58 11.96 21.45 0.26 -49.32 16 14 Si 0.95 41.14 29.54 68.60 2.03 43.16 16 15 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 16 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 17 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 18 C -0.09 -4.14 4.94 30.76 0.15 -3.98 16 19 C -0.12 -4.25 5.90 30.77 0.18 -4.06 16 20 C -0.02 -0.80 6.28 30.03 0.19 -0.61 16 21 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 22 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 23 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 25 H 0.11 4.65 4.64 -2.39 -0.01 4.63 16 26 H 0.21 5.50 8.06 -2.91 -0.02 5.48 16 27 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 28 H 0.06 2.82 6.90 -2.39 -0.02 2.80 16 29 H 0.03 1.55 8.08 -2.39 -0.02 1.53 16 30 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.05 1.76 8.11 -2.39 -0.02 1.74 16 32 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -59.51 266.89 5.04 -54.48 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 1.09 Total: 15.37 kcal Atomic # 6 Polarization: -35.50 SS G_CDS: 3.60 Total: -31.91 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -1.67 Total: -81.10 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.16 kcal Total: -59.51 5.04 -54.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261196531.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.345 kcal (2) G-P(sol) polarization free energy of solvation -59.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds