Wall clock time and date at job start Mon Mar 30 2020 03:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47034 * 2 1 4 4 N 1.40293 * 126.08817 * 84.34336 * 3 2 1 5 5 C 1.31074 * 108.27118 * 180.02562 * 4 3 2 6 6 C 1.39294 * 108.07748 * 359.97438 * 5 4 3 7 7 C 1.34317 * 126.09570 * 264.02901 * 3 2 1 8 8 C 1.50833 * 128.03674 * 0.45369 * 7 3 2 9 9 H 1.09000 * 109.89648 * 76.40139 * 8 7 3 10 10 C 1.50705 * 109.55399 * 315.83445 * 8 7 3 11 11 H 1.07999 * 120.00415 * 355.69003 * 10 8 7 12 12 C 1.37876 * 119.99915 * 175.68541 * 10 8 7 13 13 N 1.31516 * 120.00171 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 120.00144 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47173 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46683 * 120.00297 * 14 12 10 17 17 H 1.48501 * 109.47169 * 240.00157 * 14 12 10 18 18 C 1.53362 * 108.32366 * 196.22280 * 8 7 3 19 19 C 1.53109 * 109.50162 * 309.83824 * 18 8 7 20 20 C 1.50844 * 127.89968 * 179.90876 * 6 5 4 21 21 H 1.08999 * 109.46496 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.46850 * 299.99476 * 1 2 3 23 23 H 1.09001 * 109.46940 * 59.99868 * 1 2 3 24 24 H 1.08999 * 109.47634 * 120.00396 * 2 1 3 25 25 H 1.09005 * 109.47315 * 240.00680 * 2 1 3 26 26 H 1.08000 * 125.96344 * 180.02562 * 5 4 3 27 27 H 0.97000 * 120.00418 * 180.02562 * 13 12 10 28 28 H 1.08997 * 109.46285 * 189.82766 * 18 8 7 29 29 H 1.09000 * 109.45652 * 69.84153 * 18 8 7 30 30 H 1.08992 * 109.46390 * 310.26886 * 19 18 8 31 31 H 1.09008 * 109.46120 * 190.29508 * 19 18 8 32 32 H 1.08994 * 109.68142 * 316.29428 * 20 6 5 33 33 H 1.09002 * 109.68191 * 76.81326 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1884 2.1976 1.1282 5 6 2.6411 3.3611 0.7290 6 6 2.7729 3.3213 -0.6571 7 6 2.3885 2.0897 -1.0794 8 6 2.3846 1.6537 -2.5234 9 1 1.3663 1.6670 -2.9121 10 6 2.9508 0.2612 -2.6314 11 1 3.3452 -0.2309 -1.7547 12 6 2.9652 -0.3845 -3.8495 13 7 2.4853 0.2149 -4.9173 14 14 3.6677 -2.1102 -3.9836 15 1 4.1403 -2.5574 -2.6488 16 1 2.6146 -3.0367 -4.4713 17 1 4.8060 -2.1086 -4.9373 18 6 3.2560 2.6292 -3.3240 19 6 2.8361 4.0672 -3.0080 20 6 3.2544 4.4180 -1.5740 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 1.8934 -0.5137 -0.8901 26 1 2.8725 4.2035 1.3641 27 1 2.4951 -0.2395 -5.7742 28 1 3.1286 2.4393 -4.3897 29 1 4.3022 2.4883 -3.0523 30 1 1.7545 4.1595 -3.1058 31 1 3.3232 4.7493 -3.7050 32 1 2.8013 5.3654 -1.2826 33 1 4.3400 4.4964 -1.5140 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261196532.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:23 Heat of formation + Delta-G solvation = 53.940860 kcal Electronic energy + Delta-G solvation = -15441.401773 eV Core-core repulsion = 13081.824716 eV Total energy + Delta-G solvation = -2359.577058 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.61773 -35.76257 -34.19366 -32.47559 -30.13481 -28.38269 -27.96756 -25.16165 -22.87014 -21.83832 -20.81542 -19.62539 -17.68331 -16.78226 -15.55593 -14.61877 -14.51698 -13.80520 -13.56702 -13.26854 -12.71237 -12.52431 -12.39348 -12.11964 -11.87621 -11.61974 -11.13612 -11.03629 -10.82188 -10.67526 -10.44460 -10.06877 -9.79743 -9.59918 -9.37396 -9.07274 -8.55349 -8.27685 -7.28820 -6.19260 -4.25748 2.85188 3.18481 3.28080 3.30513 3.40618 3.64508 4.28859 5.10382 5.32867 5.62141 5.66747 5.69495 5.84221 5.90359 5.95686 6.10021 6.26608 6.31297 6.47005 6.54946 6.57727 6.68705 6.70662 6.75947 7.01582 7.07327 7.33283 7.51613 7.57309 7.74436 7.83671 8.03897 8.17392 8.62283 8.76347 9.38550 10.87662 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.024971 B = 0.012728 C = 0.009431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.021764 B = 2199.271346 C = 2968.252445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.112 3.888 3 N -0.355 5.355 4 N -0.336 5.336 5 C 0.043 3.957 6 C -0.282 4.282 7 C 0.144 3.856 8 C 0.103 3.897 9 H 0.050 0.950 10 C -0.524 4.524 11 H 0.061 0.939 12 C 0.071 3.929 13 N -0.880 5.880 14 Si 0.890 3.110 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.097 4.097 19 C -0.122 4.122 20 C -0.028 4.028 21 H 0.068 0.932 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.132 0.868 26 H 0.167 0.833 27 H 0.264 0.736 28 H 0.082 0.918 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.049 2.842 4.459 5.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.010 4.010 3 N -0.135 5.135 4 N -0.157 5.157 5 C -0.142 4.142 6 C -0.293 4.293 7 C 0.014 3.986 8 C 0.083 3.917 9 H 0.068 0.932 10 C -0.562 4.562 11 H 0.079 0.921 12 C -0.133 4.133 13 N -0.517 5.517 14 Si 0.717 3.283 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.207 1.207 18 C -0.136 4.136 19 C -0.160 4.160 20 C -0.066 4.066 21 H 0.086 0.914 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.149 0.851 26 H 0.184 0.816 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.498 1.951 5.303 5.846 hybrid contribution 0.642 -0.432 -0.695 1.040 sum -0.856 1.519 4.609 4.927 Atomic orbital electron populations 1.22074 0.95491 1.02059 1.02291 1.22110 0.94567 0.78699 1.05578 1.48195 1.49878 1.11603 1.03831 1.77266 1.25922 1.03162 1.09386 1.23297 1.00261 0.95933 0.94664 1.19833 1.18577 0.97381 0.93555 1.21906 0.93586 0.90474 0.92644 1.17717 0.97371 0.94607 0.82042 0.93189 1.21033 1.41515 0.98976 0.94676 0.92066 1.24934 0.94754 0.97926 0.95681 1.69918 1.44801 1.37413 0.99600 0.86567 0.79019 0.84305 0.78414 1.19649 1.20789 1.20747 1.21565 0.98802 0.90917 1.02279 1.21725 1.00389 0.98814 0.95053 1.19838 0.98901 0.94450 0.93436 0.91357 0.92912 0.91941 0.90882 0.85059 0.81560 0.92650 0.89916 0.93691 0.92889 0.93338 0.92984 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 10.24 37.16 0.38 -2.27 16 2 C 0.11 2.12 6.77 -4.04 -0.03 2.09 16 3 N -0.36 -7.70 3.60 -57.13 -0.21 -7.90 16 4 N -0.34 -7.13 12.59 30.54 0.38 -6.75 16 5 C 0.04 0.83 12.00 -17.48 -0.21 0.62 16 6 C -0.28 -5.85 5.91 -105.05 -0.62 -6.48 16 7 C 0.14 3.26 6.16 -82.33 -0.51 2.75 16 8 C 0.10 2.46 2.29 -92.67 -0.21 2.25 16 9 H 0.05 1.31 8.14 -51.93 -0.42 0.88 16 10 C -0.52 -13.27 6.63 -34.44 -0.23 -13.50 16 11 H 0.06 1.56 6.17 -52.49 -0.32 1.24 16 12 C 0.07 1.80 5.34 -17.82 -0.10 1.71 16 13 N -0.88 -23.37 11.88 55.43 0.66 -22.71 16 14 Si 0.89 19.89 29.54 -169.99 -5.02 14.87 16 15 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 C -0.10 -2.19 4.92 -26.49 -0.13 -2.32 16 19 C -0.12 -2.32 5.90 -26.45 -0.16 -2.48 16 20 C -0.03 -0.50 6.28 -27.58 -0.17 -0.67 16 21 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.13 2.69 4.63 -51.93 -0.24 2.45 16 26 H 0.17 2.58 8.06 -52.49 -0.42 2.16 16 27 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 28 H 0.08 2.02 6.82 -51.93 -0.35 1.67 16 29 H 0.04 1.04 8.08 -51.93 -0.42 0.63 16 30 H 0.05 1.01 8.11 -51.93 -0.42 0.59 16 31 H 0.05 0.82 8.14 -51.92 -0.42 0.39 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 266.68 15.07 4.02 4.02 Total: -1.00 -27.64 266.68 -6.84 -34.48 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -4.70 Total: 2.30 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -1.98 Total: -18.30 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.84 Total: -37.37 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.64 -6.84 -34.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261196532.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.423 kcal (2) G-P(sol) polarization free energy of solvation -27.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds