Wall clock time and date at job start Mon Mar 30 2020 03:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46493 * 109.47407 * 2 1 4 4 C 1.35197 * 126.00685 * 124.97526 * 3 2 1 5 5 C 1.34573 * 107.62097 * 180.02562 * 4 3 2 6 6 C 1.40492 * 108.03683 * 359.92542 * 5 4 3 7 7 N 1.30132 * 108.22435 * 0.09856 * 6 5 4 8 8 C 1.50943 * 123.48645 * 180.19983 * 6 5 4 9 9 C 1.53273 * 108.17159 * 16.68555 * 8 6 5 10 10 H 1.09006 * 109.44325 * 69.43178 * 9 8 6 11 11 C 1.50701 * 109.34949 * 189.22036 * 9 8 6 12 12 H 1.07995 * 120.00255 * 120.31213 * 11 9 8 13 13 C 1.37884 * 120.00091 * 300.31034 * 11 9 8 14 14 N 1.31507 * 120.00044 * 179.97438 * 13 11 9 15 15 Si 1.86806 * 119.99665 * 0.02562 * 13 11 9 16 16 H 1.48492 * 109.47195 * 90.00165 * 15 13 11 17 17 H 1.48504 * 109.46696 * 210.00017 * 15 13 11 18 18 H 1.48496 * 109.47246 * 329.99860 * 15 13 11 19 19 C 1.53020 * 109.81038 * 309.29597 * 9 8 6 20 20 C 1.50876 * 128.33011 * 179.89179 * 5 4 3 21 21 H 1.08994 * 109.46656 * 59.99832 * 1 2 3 22 22 H 1.08994 * 109.47072 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46305 * 299.99986 * 1 2 3 24 24 H 1.09002 * 109.46854 * 239.99516 * 2 1 3 25 25 H 1.09005 * 109.47061 * 120.00402 * 2 1 3 26 26 H 1.08000 * 126.18633 * 0.04855 * 4 3 2 27 27 H 1.08997 * 109.72181 * 136.37324 * 8 6 5 28 28 H 1.09001 * 109.71414 * 256.97408 * 8 6 5 29 29 H 0.97000 * 120.00181 * 180.02562 * 14 13 11 30 30 H 1.09002 * 109.42816 * 311.68333 * 19 9 8 31 31 H 1.09002 * 109.42715 * 191.79185 * 19 9 8 32 32 H 1.08997 * 109.72309 * 76.95375 * 20 5 4 33 33 H 1.08998 * 109.75417 * 316.32566 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8745 1.9215 0.8962 5 6 3.0704 3.2067 0.5487 6 6 2.3093 3.4667 -0.6033 7 7 1.6800 2.3756 -0.9301 8 6 2.2764 4.8083 -1.2944 9 6 3.4747 5.6283 -0.8037 10 1 4.3957 5.1926 -1.1912 11 6 3.3457 7.0460 -1.2982 12 1 3.2968 7.8619 -0.5923 13 6 3.2901 7.3016 -2.6520 14 7 3.1770 8.5386 -3.0836 15 14 3.3740 5.8903 -3.8731 16 1 2.0013 5.4025 -4.1609 17 1 4.0058 6.3616 -5.1316 18 1 4.1815 4.7850 -3.2975 19 6 3.5142 5.6246 0.7260 20 6 3.9364 4.2383 1.2286 21 1 -0.3632 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.3206 1.4134 1.7383 27 1 2.3433 4.6680 -2.3732 28 1 1.3495 5.3262 -1.0478 29 1 3.1375 8.7184 -4.0360 30 1 2.5247 5.8654 1.1148 31 1 4.2308 6.3695 1.0720 32 1 4.9830 4.0605 0.9814 33 1 3.7988 4.1809 2.3083 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261200026.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:30 Heat of formation + Delta-G solvation = 64.565604 kcal Electronic energy + Delta-G solvation = -14965.774780 eV Core-core repulsion = 12606.658446 eV Total energy + Delta-G solvation = -2359.116334 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.97646 -36.50315 -33.82308 -32.33639 -31.28374 -29.18202 -27.86320 -25.52050 -23.29875 -22.05847 -20.56888 -19.87380 -18.00385 -16.76481 -16.30821 -15.30842 -14.81921 -14.03131 -13.99868 -13.46448 -13.10469 -12.81362 -12.54798 -12.41683 -12.22556 -12.01441 -11.52025 -11.25542 -11.02023 -10.80493 -10.39214 -10.21179 -9.82635 -9.63302 -9.12074 -8.99618 -8.66614 -8.49197 -7.80981 -6.03125 -4.02086 2.28662 2.80989 3.28537 3.35300 3.45401 3.48744 4.46473 4.54032 4.90462 5.02315 5.11563 5.22220 5.36743 5.44757 5.68707 5.78089 5.82649 5.88855 6.01193 6.15203 6.35645 6.40991 6.49871 6.56931 6.71058 6.86573 7.02354 7.15844 7.35263 7.42322 7.61004 7.82197 8.23865 8.57947 9.01977 9.60034 11.10049 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.037107 B = 0.008848 C = 0.007622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.385339 B = 3163.838822 C = 3672.553407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.137 3.863 3 N -0.393 5.393 4 C 0.040 3.960 5 C -0.225 4.225 6 C 0.095 3.905 7 N -0.302 5.302 8 C -0.044 4.044 9 C 0.019 3.981 10 H 0.030 0.970 11 C -0.511 4.511 12 H 0.077 0.923 13 C 0.072 3.928 14 N -0.901 5.901 15 Si 0.878 3.122 16 H -0.277 1.277 17 H -0.296 1.296 18 H -0.264 1.264 19 C -0.097 4.097 20 C -0.043 4.043 21 H 0.070 0.930 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.166 0.834 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.263 0.737 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.621 -15.971 8.117 17.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.016 3.984 3 N -0.177 5.177 4 C -0.103 4.103 5 C -0.236 4.236 6 C -0.073 4.073 7 N -0.123 5.123 8 C -0.083 4.083 9 C 0.000 4.000 10 H 0.048 0.952 11 C -0.549 4.549 12 H 0.095 0.905 13 C -0.130 4.130 14 N -0.539 5.539 15 Si 0.708 3.292 16 H -0.203 1.203 17 H -0.224 1.224 18 H -0.190 1.190 19 C -0.135 4.135 20 C -0.081 4.081 21 H 0.089 0.911 22 H 0.088 0.912 23 H 0.078 0.922 24 H 0.095 0.905 25 H 0.107 0.893 26 H 0.183 0.817 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.492 -16.584 7.153 18.232 hybrid contribution 0.481 -0.562 -0.228 0.774 sum -2.011 -17.146 6.924 18.601 Atomic orbital electron populations 1.22047 0.94284 1.02234 1.03650 1.21483 0.95723 0.78297 1.02909 1.48644 1.37175 1.09764 1.22078 1.21892 0.96951 0.94717 0.96734 1.20241 1.07582 0.94846 1.00958 1.22976 0.94009 0.95281 0.95080 1.77016 1.24555 0.97090 1.13646 1.20880 1.02695 0.86915 0.97851 1.19163 0.92861 0.95607 0.92417 0.95178 1.21075 1.50378 0.90926 0.92542 0.90525 1.25010 0.94421 0.95208 0.98362 1.69891 1.50500 1.18784 1.14706 0.86986 0.78607 0.82984 0.80604 1.20323 1.22369 1.18952 1.21473 1.00690 0.93910 0.97396 1.20099 0.97002 0.93552 0.97454 0.91093 0.91213 0.92229 0.90535 0.89297 0.81696 0.92130 0.89888 0.92676 0.92794 0.91985 0.91908 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 10.10 37.16 0.38 -1.30 16 2 C 0.14 1.50 7.23 -4.04 -0.03 1.47 16 3 N -0.39 -6.29 3.69 -61.49 -0.23 -6.51 16 4 C 0.04 0.61 11.41 -17.37 -0.20 0.42 16 5 C -0.22 -4.13 5.89 -104.98 -0.62 -4.75 16 6 C 0.09 2.01 7.10 -82.34 -0.58 1.43 16 7 N -0.30 -6.15 12.40 33.75 0.42 -5.73 16 8 C -0.04 -1.03 4.88 -27.62 -0.13 -1.17 16 9 C 0.02 0.45 1.63 -91.62 -0.15 0.30 16 10 H 0.03 0.75 7.17 -51.93 -0.37 0.38 16 11 C -0.51 -14.32 9.09 -34.44 -0.31 -14.64 16 12 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 13 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 14 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 15 Si 0.88 22.54 24.27 -169.99 -4.12 18.42 16 16 H -0.28 -7.00 6.95 56.52 0.39 -6.61 16 17 H -0.30 -7.57 7.11 56.52 0.40 -7.16 16 18 H -0.26 -6.66 6.51 56.52 0.37 -6.29 16 19 C -0.10 -1.95 5.13 -26.52 -0.14 -2.08 16 20 C -0.04 -0.72 6.28 -27.60 -0.17 -0.90 16 21 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.09 0.68 8.07 -51.93 -0.42 0.26 16 26 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 27 H 0.06 1.50 3.58 -51.93 -0.19 1.31 16 28 H 0.08 1.93 8.12 -51.93 -0.42 1.51 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.05 1.08 8.10 -51.93 -0.42 0.66 16 31 H 0.06 1.21 8.09 -51.93 -0.42 0.79 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 265.40 15.07 4.00 4.00 Total: -1.00 -32.48 265.40 -6.01 -38.49 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -4.80 Total: -2.51 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -2.06 Total: -19.24 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.97 Total: -39.16 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.12 Total: 18.42 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.48 -6.01 -38.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261200026.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.057 kcal (2) G-P(sol) polarization free energy of solvation -32.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds