Wall clock time and date at job start Mon Mar 30 2020 03:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46493 * 109.47407 * 2 1 4 4 C 1.35197 * 126.00685 * 124.97526 * 3 2 1 5 5 C 1.34573 * 107.62097 * 180.02562 * 4 3 2 6 6 C 1.40492 * 108.03683 * 359.92542 * 5 4 3 7 7 N 1.30132 * 108.22435 * 0.09856 * 6 5 4 8 8 C 1.50943 * 123.48645 * 180.19983 * 6 5 4 9 9 C 1.53273 * 108.17159 * 16.68555 * 8 6 5 10 10 H 1.09006 * 109.44325 * 69.43178 * 9 8 6 11 11 C 1.50701 * 109.34949 * 189.22036 * 9 8 6 12 12 H 1.07995 * 120.00255 * 120.31213 * 11 9 8 13 13 C 1.37884 * 120.00091 * 300.31034 * 11 9 8 14 14 N 1.31507 * 120.00044 * 179.97438 * 13 11 9 15 15 Si 1.86806 * 119.99665 * 0.02562 * 13 11 9 16 16 H 1.48492 * 109.47195 * 90.00165 * 15 13 11 17 17 H 1.48504 * 109.46696 * 210.00017 * 15 13 11 18 18 H 1.48496 * 109.47246 * 329.99860 * 15 13 11 19 19 C 1.53020 * 109.81038 * 309.29597 * 9 8 6 20 20 C 1.50876 * 128.33011 * 179.89179 * 5 4 3 21 21 H 1.08994 * 109.46656 * 59.99832 * 1 2 3 22 22 H 1.08994 * 109.47072 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46305 * 299.99986 * 1 2 3 24 24 H 1.09002 * 109.46854 * 239.99516 * 2 1 3 25 25 H 1.09005 * 109.47061 * 120.00402 * 2 1 3 26 26 H 1.08000 * 126.18633 * 0.04855 * 4 3 2 27 27 H 1.08997 * 109.72181 * 136.37324 * 8 6 5 28 28 H 1.09001 * 109.71414 * 256.97408 * 8 6 5 29 29 H 0.97000 * 120.00181 * 180.02562 * 14 13 11 30 30 H 1.09002 * 109.42816 * 311.68333 * 19 9 8 31 31 H 1.09002 * 109.42715 * 191.79185 * 19 9 8 32 32 H 1.08997 * 109.72309 * 76.95375 * 20 5 4 33 33 H 1.08998 * 109.75417 * 316.32566 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8745 1.9215 0.8962 5 6 3.0704 3.2067 0.5487 6 6 2.3093 3.4667 -0.6033 7 7 1.6800 2.3756 -0.9301 8 6 2.2764 4.8083 -1.2944 9 6 3.4747 5.6283 -0.8037 10 1 4.3957 5.1926 -1.1912 11 6 3.3457 7.0460 -1.2982 12 1 3.2968 7.8619 -0.5923 13 6 3.2901 7.3016 -2.6520 14 7 3.1770 8.5386 -3.0836 15 14 3.3740 5.8903 -3.8731 16 1 2.0013 5.4025 -4.1609 17 1 4.0058 6.3616 -5.1316 18 1 4.1815 4.7850 -3.2975 19 6 3.5142 5.6246 0.7260 20 6 3.9364 4.2383 1.2286 21 1 -0.3632 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.3206 1.4134 1.7383 27 1 2.3433 4.6680 -2.3732 28 1 1.3495 5.3262 -1.0478 29 1 3.1375 8.7184 -4.0360 30 1 2.5247 5.8654 1.1148 31 1 4.2308 6.3695 1.0720 32 1 4.9830 4.0605 0.9814 33 1 3.7988 4.1809 2.3083 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261200026.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:29 Heat of formation + Delta-G solvation = 43.059044 kcal Electronic energy + Delta-G solvation = -14966.707374 eV Core-core repulsion = 12606.658446 eV Total energy + Delta-G solvation = -2360.048929 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.30947 -38.10576 -35.14478 -34.15785 -32.86521 -30.58532 -29.32454 -27.26427 -24.79415 -23.30190 -22.07287 -21.35480 -19.52857 -18.83925 -17.56364 -16.72272 -16.48608 -15.54443 -15.10868 -15.01560 -14.88571 -14.56277 -13.95276 -13.84617 -13.46667 -13.22744 -12.87774 -12.75687 -12.59901 -12.28654 -12.11736 -11.85947 -11.66887 -11.35311 -11.05963 -10.89819 -10.64577 -10.09756 -9.09709 -8.31256 -6.33037 1.02065 1.27868 1.31562 1.41516 1.70650 1.86366 2.29336 3.03675 3.51611 3.98697 4.05135 4.13377 4.22964 4.30438 4.36817 4.44519 4.63685 4.73478 4.77993 4.79111 4.86768 4.99691 5.04429 5.15867 5.23566 5.26850 5.45615 5.53118 5.66903 5.74642 5.84504 6.32154 6.35083 6.74163 6.86025 7.32420 8.85621 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.037107 B = 0.008848 C = 0.007622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.385339 B = 3163.838822 C = 3672.553407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.125 3.875 3 N -0.384 5.384 4 C 0.068 3.932 5 C -0.255 4.255 6 C 0.062 3.938 7 N -0.337 5.337 8 C -0.039 4.039 9 C 0.021 3.979 10 H 0.022 0.978 11 C -0.512 4.512 12 H 0.045 0.955 13 C 0.021 3.979 14 N -0.945 5.945 15 Si 0.937 3.063 16 H -0.275 1.275 17 H -0.292 1.292 18 H -0.257 1.257 19 C -0.095 4.095 20 C -0.031 4.031 21 H 0.039 0.961 22 H 0.103 0.897 23 H 0.053 0.947 24 H 0.084 0.916 25 H 0.136 0.864 26 H 0.221 0.779 27 H 0.042 0.958 28 H 0.067 0.933 29 H 0.266 0.734 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.074 -19.664 9.923 22.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.005 3.995 3 N -0.168 5.168 4 C -0.077 4.077 5 C -0.266 4.266 6 C -0.105 4.105 7 N -0.160 5.160 8 C -0.078 4.078 9 C 0.002 3.998 10 H 0.040 0.960 11 C -0.551 4.551 12 H 0.063 0.937 13 C -0.177 4.177 14 N -0.585 5.585 15 Si 0.766 3.234 16 H -0.202 1.202 17 H -0.219 1.219 18 H -0.182 1.182 19 C -0.132 4.132 20 C -0.069 4.069 21 H 0.058 0.942 22 H 0.122 0.878 23 H 0.072 0.928 24 H 0.102 0.898 25 H 0.154 0.846 26 H 0.238 0.762 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.953 -20.292 8.961 22.268 hybrid contribution 0.250 0.514 -0.707 0.909 sum -1.703 -19.778 8.254 21.499 Atomic orbital electron populations 1.22015 0.94090 1.03871 1.01793 1.22028 0.95991 0.75857 1.05584 1.49089 1.36308 1.10576 1.20798 1.22616 0.94789 0.93514 0.96741 1.20457 1.08618 0.96790 1.00760 1.22614 0.96424 0.94592 0.96821 1.76891 1.25401 0.97965 1.15728 1.20514 1.01415 0.88958 0.96945 1.19082 0.92705 0.92768 0.95263 0.95971 1.21411 1.48978 0.92585 0.92084 0.93704 1.25721 0.94477 0.97234 1.00252 1.70013 1.52524 1.20764 1.15236 0.86019 0.78689 0.80275 0.78456 1.20155 1.21913 1.18199 1.21399 1.00584 0.96779 0.94475 1.20018 0.97099 0.90526 0.99246 0.94163 0.87839 0.92833 0.89780 0.84643 0.76228 0.94013 0.91471 0.92497 0.93401 0.92040 0.91048 0.88890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 10.10 71.98 0.73 -2.04 16 2 C 0.12 2.14 7.23 86.38 0.62 2.76 16 3 N -0.38 -10.87 3.69 -348.47 -1.29 -12.16 16 4 C 0.07 1.74 11.41 83.33 0.95 2.69 16 5 C -0.25 -8.62 5.89 -20.10 -0.12 -8.74 16 6 C 0.06 2.59 7.10 43.44 0.31 2.89 16 7 N -0.34 -13.31 12.40 -47.13 -0.58 -13.90 16 8 C -0.04 -1.86 4.88 30.02 0.15 -1.72 16 9 C 0.02 1.03 1.63 -11.44 -0.02 1.01 16 10 H 0.02 1.11 7.17 -2.38 -0.02 1.09 16 11 C -0.51 -29.84 9.09 25.60 0.23 -29.60 16 12 H 0.04 2.82 7.99 -2.91 -0.02 2.80 16 13 C 0.02 1.24 5.45 84.66 0.46 1.70 16 14 N -0.94 -60.17 13.96 21.45 0.30 -59.87 16 15 Si 0.94 48.00 24.27 68.60 1.66 49.66 16 16 H -0.28 -13.87 6.95 99.48 0.69 -13.18 16 17 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 18 H -0.26 -12.74 6.51 99.48 0.65 -12.09 16 19 C -0.09 -3.76 5.13 30.73 0.16 -3.60 16 20 C -0.03 -0.95 6.28 30.03 0.19 -0.76 16 21 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.14 1.14 8.07 -2.38 -0.02 1.12 16 26 H 0.22 3.05 8.06 -2.91 -0.02 3.03 16 27 H 0.04 2.10 3.58 -2.39 -0.01 2.09 16 28 H 0.07 3.28 8.12 -2.39 -0.02 3.26 16 29 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 30 H 0.05 1.92 8.10 -2.39 -0.02 1.90 16 31 H 0.06 2.39 8.09 -2.39 -0.02 2.37 16 32 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -74.20 265.40 4.76 -69.44 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: 1.01 Total: 2.24 kcal Atomic # 6 Polarization: -39.07 SS G_CDS: 3.66 Total: -35.41 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -1.57 Total: -85.93 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 1.66 Total: 49.66 kcal Total: -74.20 4.76 -69.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261200026.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.494 kcal (2) G-P(sol) polarization free energy of solvation -74.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds