Wall clock time and date at job start Mon Mar 30 2020 03:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.46963 * 2 1 4 4 C 1.35208 * 126.00233 * 124.77051 * 3 2 1 5 5 C 1.34569 * 107.61501 * 179.88948 * 4 3 2 6 6 C 1.40491 * 108.04023 * 0.27320 * 5 4 3 7 7 N 1.30121 * 108.22855 * 359.88458 * 6 5 4 8 8 C 1.50947 * 123.48406 * 179.97438 * 6 5 4 9 9 C 1.53368 * 108.20490 * 16.67931 * 8 6 5 10 10 C 1.53023 * 109.75759 * 309.33752 * 9 8 6 11 11 H 1.08994 * 109.38696 * 311.66415 * 10 9 8 12 12 C 1.50695 * 109.43447 * 191.78429 * 10 9 8 13 13 H 1.08011 * 119.99885 * 359.74676 * 12 10 9 14 14 C 1.37872 * 120.00324 * 179.74625 * 12 10 9 15 15 N 1.31513 * 120.00041 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00041 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47350 * 90.00045 * 16 14 12 18 18 H 1.48498 * 109.47296 * 209.99734 * 16 14 12 19 19 H 1.48501 * 109.47333 * 329.99780 * 16 14 12 20 20 C 1.50886 * 128.32652 * 180.02562 * 5 4 3 21 21 H 1.09000 * 109.47357 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46913 * 300.00098 * 1 2 3 23 23 H 1.09003 * 109.47361 * 59.99846 * 1 2 3 24 24 H 1.09002 * 109.46913 * 239.99902 * 2 1 3 25 25 H 1.09004 * 109.46913 * 119.99866 * 2 1 3 26 26 H 1.07997 * 126.18974 * 0.02562 * 4 3 2 27 27 H 1.09004 * 109.71229 * 257.00378 * 8 6 5 28 28 H 1.08995 * 109.75305 * 136.37881 * 8 6 5 29 29 H 1.09007 * 109.42544 * 189.25268 * 9 8 6 30 30 H 1.09002 * 109.42329 * 69.43391 * 9 8 6 31 31 H 0.97000 * 120.00508 * 180.02562 * 15 14 12 32 32 H 1.09003 * 109.71516 * 316.59430 * 20 5 4 33 33 H 1.09000 * 109.71666 * 77.19719 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8713 1.9226 0.8985 5 6 3.0706 3.2066 0.5484 6 6 2.3087 3.4669 -0.6029 7 7 1.6791 2.3760 -0.9296 8 6 2.2751 4.8087 -1.2934 9 6 3.4741 5.6300 -0.8034 10 6 3.5143 5.6245 0.7263 11 1 2.5247 5.8644 1.1151 12 6 4.5045 6.6544 1.2055 13 1 5.0532 7.2498 0.4906 14 6 4.7101 6.8368 2.5566 15 7 4.0425 6.1116 3.4271 16 14 5.9371 8.1140 3.1506 17 1 5.2471 9.4163 3.3324 18 1 6.5188 7.6771 4.4452 19 1 7.0208 8.2639 2.1465 20 6 3.9375 4.2379 1.2278 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.3144 1.4156 1.7429 27 1 1.3486 5.3267 -1.0456 28 1 2.3412 4.6695 -2.3724 29 1 3.3808 6.6559 -1.1598 30 1 4.3948 5.1946 -1.1919 31 1 4.1868 6.2401 4.3777 32 1 3.8006 4.1797 2.3076 33 1 4.9838 4.0599 0.9796 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261200272.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:24 Heat of formation + Delta-G solvation = 56.598607 kcal Electronic energy + Delta-G solvation = -14852.229512 eV Core-core repulsion = 12492.767703 eV Total energy + Delta-G solvation = -2359.461809 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.72112 -36.19077 -33.73756 -32.15820 -30.87918 -28.74211 -27.81626 -24.79470 -23.69165 -21.66495 -20.28418 -19.93489 -17.77262 -16.22521 -16.13471 -15.15727 -14.52563 -13.97768 -13.79888 -13.49565 -12.63455 -12.42768 -12.37678 -12.08113 -11.86282 -11.63497 -11.39910 -11.12584 -10.91158 -10.66252 -10.49063 -10.27008 -9.97624 -9.43654 -8.93140 -8.74796 -8.56485 -8.31735 -7.42010 -5.92633 -3.98032 2.50771 2.99685 3.34531 3.41310 3.44668 3.55927 4.48952 4.70025 5.04208 5.19348 5.33185 5.39602 5.42202 5.59390 5.78648 5.92394 6.02634 6.11012 6.27186 6.49612 6.56357 6.70480 6.76832 6.87579 7.15303 7.19464 7.43412 7.55439 7.70192 7.82102 8.07778 8.18726 8.39819 8.52537 9.06235 9.66296 11.13733 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.049656 B = 0.007100 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.743918 B = 3942.883855 C = 4322.378479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.139 3.861 3 N -0.395 5.395 4 C 0.028 3.972 5 C -0.202 4.202 6 C 0.080 3.920 7 N -0.306 5.306 8 C -0.036 4.036 9 C -0.106 4.106 10 C 0.050 3.950 11 H 0.027 0.973 12 C -0.512 4.512 13 H 0.056 0.944 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.889 3.111 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.275 1.275 20 C -0.035 4.035 21 H 0.067 0.933 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.164 0.836 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.259 0.741 32 H 0.091 0.909 33 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.740 -9.824 -4.753 11.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.017 3.983 3 N -0.180 5.180 4 C -0.114 4.114 5 C -0.213 4.213 6 C -0.088 4.088 7 N -0.127 5.127 8 C -0.075 4.075 9 C -0.144 4.144 10 C 0.032 3.968 11 H 0.045 0.955 12 C -0.550 4.550 13 H 0.074 0.926 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.717 3.283 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.200 1.200 20 C -0.073 4.073 21 H 0.086 0.914 22 H 0.078 0.922 23 H 0.087 0.913 24 H 0.092 0.908 25 H 0.106 0.894 26 H 0.182 0.818 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.598 -10.572 -5.354 12.711 hybrid contribution 1.187 0.796 1.135 1.825 sum -3.411 -9.776 -4.219 11.181 Atomic orbital electron populations 1.22050 0.94538 1.02056 1.03526 1.21433 0.95494 0.78604 1.02749 1.48513 1.37806 1.09391 1.22267 1.21977 0.97383 0.95242 0.96764 1.20926 1.05969 0.95152 0.99277 1.22472 0.95616 0.94687 0.96050 1.76806 1.24444 0.97157 1.14336 1.20186 1.00718 0.88908 0.97709 1.21683 0.95137 0.97694 0.99913 1.18679 0.97162 0.92316 0.88641 0.95488 1.21236 1.22985 1.19256 0.91555 0.92623 1.24969 0.96005 0.95981 0.96988 1.69908 1.41610 1.39952 1.01501 0.86652 0.81651 0.81900 0.78116 1.20803 1.21377 1.19964 1.20262 0.94471 0.91733 1.00849 0.91383 0.92191 0.91303 0.90805 0.89356 0.81839 0.90784 0.91737 0.92406 0.93197 0.93144 0.89032 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 10.10 37.16 0.38 -1.44 16 2 C 0.14 1.68 7.23 -4.04 -0.03 1.65 16 3 N -0.39 -6.84 3.69 -61.49 -0.23 -7.07 16 4 C 0.03 0.52 11.41 -17.36 -0.20 0.32 16 5 C -0.20 -4.36 5.89 -104.98 -0.62 -4.98 16 6 C 0.08 1.67 7.10 -82.35 -0.58 1.08 16 7 N -0.31 -6.09 12.40 33.75 0.42 -5.68 16 8 C -0.04 -0.69 6.31 -27.57 -0.17 -0.86 16 9 C -0.11 -2.24 5.12 -26.53 -0.14 -2.38 16 10 C 0.05 1.27 2.04 -91.56 -0.19 1.08 16 11 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 12 C -0.51 -13.94 8.51 -34.44 -0.29 -14.24 16 13 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 14 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 15 N -0.89 -25.31 11.45 55.43 0.63 -24.68 16 16 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 C -0.03 -0.83 5.18 -27.59 -0.14 -0.97 16 21 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.09 0.84 8.07 -51.93 -0.42 0.42 16 26 H 0.16 2.51 8.06 -52.49 -0.42 2.08 16 27 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.16 8.09 -51.93 -0.42 0.74 16 30 H 0.05 1.05 8.10 -51.93 -0.42 0.62 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.09 2.41 6.42 -51.93 -0.33 2.08 16 33 H 0.05 1.13 8.12 -51.93 -0.42 0.70 16 LS Contribution 272.45 15.07 4.11 4.11 Total: -1.00 -30.36 272.45 -7.11 -37.46 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -4.94 Total: -1.11 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -2.08 Total: -19.15 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.83 Total: -37.42 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.36 -7.11 -37.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261200272.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.061 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds