Wall clock time and date at job start Mon Mar 30 2020 03:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.46963 * 2 1 4 4 C 1.35208 * 126.00233 * 124.77051 * 3 2 1 5 5 C 1.34569 * 107.61501 * 179.88948 * 4 3 2 6 6 C 1.40491 * 108.04023 * 0.27320 * 5 4 3 7 7 N 1.30121 * 108.22855 * 359.88458 * 6 5 4 8 8 C 1.50947 * 123.48406 * 179.97438 * 6 5 4 9 9 C 1.53368 * 108.20490 * 16.67931 * 8 6 5 10 10 C 1.53023 * 109.75759 * 309.33752 * 9 8 6 11 11 H 1.08994 * 109.38696 * 311.66415 * 10 9 8 12 12 C 1.50695 * 109.43447 * 191.78429 * 10 9 8 13 13 H 1.08011 * 119.99885 * 359.74676 * 12 10 9 14 14 C 1.37872 * 120.00324 * 179.74625 * 12 10 9 15 15 N 1.31513 * 120.00041 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00041 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47350 * 90.00045 * 16 14 12 18 18 H 1.48498 * 109.47296 * 209.99734 * 16 14 12 19 19 H 1.48501 * 109.47333 * 329.99780 * 16 14 12 20 20 C 1.50886 * 128.32652 * 180.02562 * 5 4 3 21 21 H 1.09000 * 109.47357 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46913 * 300.00098 * 1 2 3 23 23 H 1.09003 * 109.47361 * 59.99846 * 1 2 3 24 24 H 1.09002 * 109.46913 * 239.99902 * 2 1 3 25 25 H 1.09004 * 109.46913 * 119.99866 * 2 1 3 26 26 H 1.07997 * 126.18974 * 0.02562 * 4 3 2 27 27 H 1.09004 * 109.71229 * 257.00378 * 8 6 5 28 28 H 1.08995 * 109.75305 * 136.37881 * 8 6 5 29 29 H 1.09007 * 109.42544 * 189.25268 * 9 8 6 30 30 H 1.09002 * 109.42329 * 69.43391 * 9 8 6 31 31 H 0.97000 * 120.00508 * 180.02562 * 15 14 12 32 32 H 1.09003 * 109.71516 * 316.59430 * 20 5 4 33 33 H 1.09000 * 109.71666 * 77.19719 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8713 1.9226 0.8985 5 6 3.0706 3.2066 0.5484 6 6 2.3087 3.4669 -0.6029 7 7 1.6791 2.3760 -0.9296 8 6 2.2751 4.8087 -1.2934 9 6 3.4741 5.6300 -0.8034 10 6 3.5143 5.6245 0.7263 11 1 2.5247 5.8644 1.1151 12 6 4.5045 6.6544 1.2055 13 1 5.0532 7.2498 0.4906 14 6 4.7101 6.8368 2.5566 15 7 4.0425 6.1116 3.4271 16 14 5.9371 8.1140 3.1506 17 1 5.2471 9.4163 3.3324 18 1 6.5188 7.6771 4.4452 19 1 7.0208 8.2639 2.1465 20 6 3.9375 4.2379 1.2278 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.3144 1.4156 1.7429 27 1 1.3486 5.3267 -1.0456 28 1 2.3412 4.6695 -2.3724 29 1 3.3808 6.6559 -1.1598 30 1 4.3948 5.1946 -1.1919 31 1 4.1868 6.2401 4.3777 32 1 3.8006 4.1797 2.3076 33 1 4.9838 4.0599 0.9796 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261200272.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:24 Heat of formation + Delta-G solvation = 39.172639 kcal Electronic energy + Delta-G solvation = -14852.985159 eV Core-core repulsion = 12492.767703 eV Total energy + Delta-G solvation = -2360.217456 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.21222 -37.87022 -35.18373 -33.87837 -32.54056 -30.14489 -29.56072 -26.58740 -25.21136 -23.04705 -22.02443 -21.42638 -19.40696 -18.26868 -17.48425 -16.49423 -16.45422 -15.45075 -15.08879 -14.98330 -14.47644 -14.10789 -13.75577 -13.44139 -13.26579 -13.16429 -12.85880 -12.77880 -12.51031 -12.26195 -12.23847 -12.04650 -11.64496 -11.29312 -10.73950 -10.70963 -10.42681 -10.02239 -8.99599 -8.01735 -6.15229 1.03981 1.45884 1.46665 1.56848 1.73573 1.95285 2.49054 3.24923 3.55516 4.02675 4.06393 4.15315 4.35878 4.39266 4.40060 4.66870 4.74642 4.83886 4.92114 4.97384 5.05583 5.08171 5.14390 5.25508 5.29886 5.41540 5.66496 5.78065 5.82694 6.06076 6.18761 6.34047 6.45313 6.88958 6.96707 7.52524 9.03240 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.049656 B = 0.007100 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.743918 B = 3942.883855 C = 4322.378479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.125 3.875 3 N -0.384 5.384 4 C 0.046 3.954 5 C -0.247 4.247 6 C 0.063 3.937 7 N -0.318 5.318 8 C -0.031 4.031 9 C -0.097 4.097 10 C 0.047 3.953 11 H -0.009 1.009 12 C -0.532 4.532 13 H 0.055 0.945 14 C 0.013 3.987 15 N -0.918 5.918 16 Si 0.953 3.047 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.268 1.268 20 C -0.017 4.017 21 H 0.104 0.896 22 H 0.046 0.954 23 H 0.049 0.951 24 H 0.091 0.909 25 H 0.122 0.878 26 H 0.196 0.804 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.259 0.741 32 H 0.061 0.939 33 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.671 -11.189 -5.211 12.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.005 3.995 3 N -0.169 5.169 4 C -0.098 4.098 5 C -0.258 4.258 6 C -0.104 4.104 7 N -0.141 5.141 8 C -0.070 4.070 9 C -0.135 4.135 10 C 0.029 3.971 11 H 0.009 0.991 12 C -0.570 4.570 13 H 0.074 0.926 14 C -0.185 4.185 15 N -0.558 5.558 16 Si 0.779 3.221 17 H -0.203 1.203 18 H -0.210 1.210 19 H -0.192 1.192 20 C -0.056 4.056 21 H 0.123 0.877 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.110 0.890 25 H 0.140 0.860 26 H 0.213 0.787 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.548 -11.952 -5.840 14.059 hybrid contribution 1.112 1.097 1.295 2.029 sum -3.436 -10.855 -4.546 12.260 Atomic orbital electron populations 1.22014 0.93746 1.03938 1.01875 1.21996 0.96196 0.75961 1.05314 1.48978 1.36459 1.10640 1.20796 1.22369 0.96178 0.94382 0.96906 1.20795 1.07941 0.96268 1.00833 1.22633 0.96000 0.95554 0.96243 1.76744 1.24617 0.97385 1.15323 1.20142 0.99659 0.88127 0.99048 1.21526 0.96269 0.98644 0.97048 1.18641 0.94640 0.92553 0.91293 0.99067 1.21606 1.23484 1.19941 0.92016 0.92647 1.25736 0.97725 0.97883 0.97173 1.70054 1.42835 1.41219 1.01647 0.85637 0.79485 0.79376 0.77617 1.20348 1.21036 1.19220 1.19836 0.94272 0.92359 0.99134 0.87746 0.93519 0.93216 0.89038 0.86012 0.78720 0.90549 0.89151 0.91715 0.93201 0.93166 0.92010 0.94928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 10.10 71.98 0.73 -2.32 16 2 C 0.12 2.57 7.23 86.38 0.62 3.19 16 3 N -0.38 -12.47 3.69 -348.47 -1.29 -13.75 16 4 C 0.05 1.62 11.41 83.33 0.95 2.57 16 5 C -0.25 -10.70 5.89 -20.10 -0.12 -10.81 16 6 C 0.06 2.59 7.10 43.44 0.31 2.90 16 7 N -0.32 -12.26 12.40 -47.14 -0.58 -12.85 16 8 C -0.03 -1.17 6.31 30.05 0.19 -0.98 16 9 C -0.10 -4.13 5.12 30.73 0.16 -3.97 16 10 C 0.05 2.45 2.04 -11.40 -0.02 2.42 16 11 H -0.01 -0.51 8.10 -2.39 -0.02 -0.53 16 12 C -0.53 -29.63 8.51 25.60 0.22 -29.41 16 13 H 0.06 3.00 7.74 -2.90 -0.02 2.98 16 14 C 0.01 0.74 5.30 84.65 0.45 1.19 16 15 N -0.92 -53.48 11.45 21.45 0.25 -53.23 16 16 Si 0.95 43.72 29.54 68.60 2.03 45.75 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 20 C -0.02 -0.85 5.18 30.04 0.16 -0.70 16 21 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.12 1.74 8.07 -2.39 -0.02 1.72 16 26 H 0.20 5.47 8.06 -2.91 -0.02 5.45 16 27 H 0.08 2.82 8.14 -2.38 -0.02 2.80 16 28 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 29 H 0.06 2.61 8.09 -2.38 -0.02 2.59 16 30 H 0.05 2.09 8.10 -2.39 -0.02 2.08 16 31 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 32 H 0.06 3.39 6.42 -2.39 -0.02 3.37 16 33 H 0.03 1.64 8.12 -2.39 -0.02 1.62 16 Total: -1.00 -66.61 272.45 5.12 -61.49 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 1.08 Total: 8.50 kcal Atomic # 6 Polarization: -39.55 SS G_CDS: 3.64 Total: -35.91 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -1.62 Total: -79.84 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -66.61 5.12 -61.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261200272.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.667 kcal (2) G-P(sol) polarization free energy of solvation -66.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds