Wall clock time and date at job start Mon Mar 30 2020 03:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47406 * 2 1 4 4 C 1.35206 * 126.00040 * 124.99716 * 3 2 1 5 5 C 1.34572 * 107.61727 * 179.97438 * 4 3 2 6 6 C 1.40495 * 108.03755 * 0.09157 * 5 4 3 7 7 N 1.30131 * 108.22387 * 0.12327 * 6 5 4 8 8 C 1.50946 * 123.48365 * 179.86943 * 6 5 4 9 9 C 1.53367 * 108.20407 * 343.31407 * 8 6 5 10 10 C 1.53019 * 109.75413 * 50.66357 * 9 8 6 11 11 H 1.09000 * 109.42896 * 48.37179 * 10 9 8 12 12 C 1.50705 * 109.42935 * 168.26486 * 10 9 8 13 13 H 1.08002 * 119.99712 * 359.97438 * 12 10 9 14 14 C 1.37875 * 120.00095 * 179.97438 * 12 10 9 15 15 N 1.31506 * 119.99908 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99876 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47336 * 59.99758 * 16 14 12 18 18 H 1.48497 * 109.47103 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47236 * 299.99867 * 16 14 12 20 20 C 1.50873 * 128.33001 * 180.18285 * 5 4 3 21 21 H 1.09003 * 109.46758 * 299.99875 * 1 2 3 22 22 H 1.09002 * 109.46845 * 59.99540 * 1 2 3 23 23 H 1.08994 * 109.47707 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46758 * 240.00125 * 2 1 3 25 25 H 1.09002 * 109.46845 * 120.00460 * 2 1 3 26 26 H 1.07997 * 126.18735 * 0.02562 * 4 3 2 27 27 H 1.09006 * 109.71523 * 102.98874 * 8 6 5 28 28 H 1.09001 * 109.71502 * 223.58524 * 8 6 5 29 29 H 1.09006 * 109.42267 * 170.75040 * 9 8 6 30 30 H 1.09004 * 109.42247 * 290.56941 * 9 8 6 31 31 H 0.97006 * 119.99838 * 179.97438 * 15 14 12 32 32 H 1.09000 * 109.71820 * 43.61605 * 20 5 4 33 33 H 1.08996 * 109.75661 * 282.98820 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8748 1.9213 0.8960 5 6 3.0715 3.2062 0.5481 6 6 2.3076 3.4674 -0.6018 7 7 1.6755 2.3773 -0.9266 8 6 2.2691 4.8110 -1.2886 9 6 2.8200 5.8618 -0.3167 10 6 4.1651 5.3938 0.2429 11 1 4.8015 5.0582 -0.5759 12 6 4.8341 6.5370 0.9617 13 1 4.3486 7.5004 1.0134 14 6 6.0659 6.3531 1.5532 15 7 6.6572 5.1802 1.4897 16 14 6.8948 7.7700 2.4447 17 1 6.0269 8.2295 3.5586 18 1 8.2003 7.3169 2.9882 19 1 7.1163 8.8903 1.4954 20 6 3.9428 4.2359 1.2241 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.3209 1.4131 1.7381 27 1 2.8853 4.7824 -2.1873 28 1 1.2415 5.0584 -1.5551 29 1 2.9554 6.8067 -0.8431 30 1 2.1153 6.0023 0.5029 31 1 7.5240 5.0509 1.9056 32 1 4.9012 3.7896 1.4893 33 1 3.4479 4.6048 2.1224 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261200273.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:27 Heat of formation + Delta-G solvation = 39.283402 kcal Electronic energy + Delta-G solvation = -14848.109347 eV Core-core repulsion = 12487.896694 eV Total energy + Delta-G solvation = -2360.212653 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.21271 -37.87179 -35.18366 -33.87852 -32.53940 -30.14247 -29.55993 -26.58485 -25.21173 -23.04551 -22.01728 -21.42298 -19.42885 -18.27193 -17.46847 -16.52986 -16.21480 -15.81949 -15.23556 -14.50898 -14.47112 -14.20599 -13.79403 -13.55234 -13.18905 -13.12429 -12.89186 -12.76901 -12.41879 -12.36002 -12.20939 -12.06459 -11.64162 -11.28859 -10.74328 -10.71388 -10.42093 -10.02195 -8.99634 -8.01435 -6.15117 1.04057 1.46665 1.47777 1.55242 1.73443 1.95198 2.49218 3.25030 3.55506 4.02686 4.06292 4.15747 4.36019 4.39334 4.40015 4.67027 4.75137 4.84389 4.92273 4.97494 5.05652 5.08142 5.14394 5.26112 5.29780 5.41515 5.66371 5.78118 5.82753 6.06105 6.19041 6.34015 6.45320 6.88965 6.96590 7.52587 9.03266 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.052310 B = 0.007018 C = 0.006416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.141350 B = 3989.037339 C = 4362.891955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.124 3.876 3 N -0.384 5.384 4 C 0.046 3.954 5 C -0.247 4.247 6 C 0.062 3.938 7 N -0.318 5.318 8 C -0.031 4.031 9 C -0.097 4.097 10 C 0.047 3.953 11 H -0.009 1.009 12 C -0.534 4.534 13 H 0.055 0.945 14 C 0.014 3.986 15 N -0.918 5.918 16 Si 0.953 3.047 17 H -0.271 1.271 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.017 4.017 21 H 0.049 0.951 22 H 0.048 0.952 23 H 0.103 0.897 24 H 0.087 0.913 25 H 0.122 0.878 26 H 0.196 0.804 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.259 0.741 32 H 0.062 0.938 33 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.330 -9.160 -0.993 13.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.004 3.996 3 N -0.169 5.169 4 C -0.098 4.098 5 C -0.258 4.258 6 C -0.104 4.104 7 N -0.141 5.141 8 C -0.070 4.070 9 C -0.135 4.135 10 C 0.029 3.971 11 H 0.009 0.991 12 C -0.572 4.572 13 H 0.074 0.926 14 C -0.185 4.185 15 N -0.557 5.557 16 Si 0.779 3.221 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.056 4.056 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.122 0.878 24 H 0.106 0.894 25 H 0.140 0.860 26 H 0.213 0.787 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -10.036 -9.984 -1.749 14.264 hybrid contribution 1.373 1.001 1.097 2.023 sum -8.662 -8.983 -0.651 12.496 Atomic orbital electron populations 1.21999 0.93441 1.03942 1.02005 1.21998 0.96405 0.75961 1.05198 1.48971 1.36335 1.10601 1.20951 1.22369 0.96102 0.94273 0.97099 1.20794 1.07182 0.96548 1.01303 1.22638 0.95919 0.95612 0.96269 1.76743 1.24875 0.97287 1.15169 1.20144 1.02005 0.87428 0.97400 1.21522 0.97308 0.97094 0.97544 1.18638 0.91780 0.93206 0.93488 0.99072 1.21583 1.03571 0.97405 1.34628 0.92643 1.25733 0.97835 0.97875 0.97034 1.70046 1.16205 1.23885 1.45610 0.85697 0.77587 0.79833 0.79024 1.19629 1.21141 1.19750 1.19832 0.95910 0.93493 0.96372 0.93146 0.93235 0.87840 0.89435 0.85977 0.78721 0.90506 0.89178 0.91715 0.93222 0.93146 0.91951 0.94986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 10.09 71.98 0.73 -2.15 16 2 C 0.12 2.56 7.23 86.38 0.62 3.18 16 3 N -0.38 -12.48 3.69 -348.47 -1.29 -13.77 16 4 C 0.05 1.61 11.41 83.33 0.95 2.56 16 5 C -0.25 -10.70 5.89 -20.10 -0.12 -10.82 16 6 C 0.06 2.59 7.10 43.44 0.31 2.90 16 7 N -0.32 -12.27 12.40 -47.13 -0.58 -12.86 16 8 C -0.03 -1.17 6.31 30.05 0.19 -0.98 16 9 C -0.10 -4.12 5.12 30.72 0.16 -3.97 16 10 C 0.05 2.46 2.05 -11.40 -0.02 2.43 16 11 H -0.01 -0.52 8.10 -2.39 -0.02 -0.54 16 12 C -0.53 -29.72 8.51 25.60 0.22 -29.50 16 13 H 0.06 3.00 7.74 -2.91 -0.02 2.97 16 14 C 0.01 0.77 5.30 84.66 0.45 1.21 16 15 N -0.92 -53.49 11.43 21.45 0.25 -53.25 16 16 Si 0.95 43.69 29.54 68.60 2.03 45.72 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 18 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 20 C -0.02 -0.86 5.17 30.03 0.16 -0.70 16 21 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 24 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.12 1.75 8.07 -2.39 -0.02 1.73 16 26 H 0.20 5.48 8.06 -2.91 -0.02 5.46 16 27 H 0.08 2.84 8.14 -2.38 -0.02 2.82 16 28 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 29 H 0.06 2.61 8.09 -2.38 -0.02 2.59 16 30 H 0.05 2.09 8.10 -2.39 -0.02 2.07 16 31 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 32 H 0.06 3.42 6.40 -2.39 -0.02 3.40 16 33 H 0.03 1.61 8.12 -2.39 -0.02 1.59 16 Total: -1.00 -66.53 272.40 5.11 -61.42 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 1.08 Total: 8.55 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 3.64 Total: -35.82 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -1.63 Total: -79.87 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -66.53 5.11 -61.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261200273.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.704 kcal (2) G-P(sol) polarization free energy of solvation -66.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds