Wall clock time and date at job start Mon Mar 30 2020 03:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34951 * 126.03463 * 2 1 4 4 C 1.35320 * 107.74569 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.03998 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47077 * 265.02295 * 5 4 3 7 7 C 1.50698 * 109.47077 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00450 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99926 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00207 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00116 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46950 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47180 * 119.99962 * 11 9 7 14 14 H 1.48502 * 109.46848 * 240.00225 * 11 9 7 15 15 C 1.39866 * 107.91898 * 359.97438 * 4 3 2 16 16 C 1.50696 * 125.89915 * 179.97438 * 15 4 3 17 17 C 1.53006 * 117.50082 * 188.64175 * 16 15 4 18 18 C 1.52997 * 117.50347 * 120.01836 * 16 15 4 19 19 N 1.30844 * 108.20609 * 0.02562 * 15 4 3 20 20 H 1.09005 * 109.46927 * 270.02579 * 1 2 3 21 21 H 1.08994 * 109.47314 * 30.02415 * 1 2 3 22 22 H 1.08998 * 109.46715 * 150.02896 * 1 2 3 23 23 H 1.07996 * 126.12664 * 359.95494 * 3 2 1 24 24 H 1.09001 * 109.46791 * 25.02169 * 5 4 3 25 25 H 1.09001 * 109.46978 * 145.01866 * 5 4 3 26 26 H 1.09002 * 109.47011 * 300.00135 * 6 5 4 27 27 H 1.08996 * 109.47143 * 60.00062 * 6 5 4 28 28 H 0.97004 * 120.00117 * 179.97438 * 10 9 7 29 29 H 1.09001 * 115.54900 * 334.34224 * 16 15 4 30 30 H 1.09001 * 117.49643 * 359.97438 * 17 16 15 31 31 H 1.08998 * 117.49581 * 145.01901 * 17 16 15 32 32 H 1.09005 * 117.50046 * 214.98504 * 18 16 15 33 33 H 1.09000 * 117.49674 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5438 0.6666 -0.0006 5 6 4.7680 1.5454 -0.0013 6 6 5.2545 1.7409 -1.4386 7 6 6.4784 2.6202 -1.4395 8 1 6.8698 3.0018 -0.5081 9 6 7.0985 2.9375 -2.6293 10 7 6.6222 2.4724 -3.7635 11 14 8.6160 4.0269 -2.6303 12 1 8.9474 4.4154 -1.2359 13 1 9.7577 3.2847 -3.2225 14 1 8.3488 5.2471 -3.4334 15 6 3.5347 -0.7320 -0.0003 16 6 4.7497 -1.6235 -0.0014 17 6 4.5254 -3.1233 -0.2048 18 6 4.9189 -2.5886 1.1737 19 7 2.2892 -1.1327 -0.0002 20 1 -0.3633 0.0005 1.0277 21 1 -0.3633 0.8897 -0.5142 22 1 -0.3633 -0.8902 -0.5134 23 1 1.9281 2.1193 -0.0007 24 1 4.5203 2.5138 0.4333 25 1 5.5545 1.0733 0.5875 26 1 5.5022 0.7724 -1.8733 27 1 4.4681 2.2130 -2.0274 28 1 7.0583 2.6960 -4.6007 29 1 5.6527 -1.1869 -0.4281 30 1 3.4989 -3.4651 -0.3375 31 1 5.2809 -3.6736 -0.7656 32 1 5.9332 -2.7872 1.5199 33 1 4.1515 -2.5785 1.9477 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261202560.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:16 Heat of formation + Delta-G solvation = 66.546049 kcal Electronic energy + Delta-G solvation = -14456.395510 eV Core-core repulsion = 12097.365054 eV Total energy + Delta-G solvation = -2359.030456 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.17167 -37.97504 -36.01737 -34.21607 -32.94556 -30.33933 -28.14483 -26.31765 -24.03176 -23.28125 -22.91807 -21.14030 -19.99241 -18.48958 -17.51659 -16.53505 -16.37726 -16.13011 -15.61144 -14.86342 -14.64074 -14.14176 -13.93130 -13.63068 -13.46357 -12.93695 -12.87475 -12.62220 -12.43353 -12.35883 -11.94648 -11.68202 -11.57253 -11.52157 -11.21694 -10.97856 -10.51129 -9.94406 -9.06522 -8.14465 -6.26327 0.94519 1.42691 1.43074 1.56660 1.71966 1.77487 2.45049 3.08406 3.17940 3.56906 3.73062 4.02626 4.14455 4.20839 4.42390 4.46153 4.51581 4.67971 4.72275 4.76428 4.89972 4.99247 5.01668 5.22741 5.24001 5.28145 5.32925 5.57318 5.75850 5.85214 5.92175 6.23995 6.30731 6.80912 6.91959 7.42973 8.97056 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.028901 B = 0.007126 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.595621 B = 3928.224106 C = 4529.994636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.383 5.383 3 C 0.051 3.949 4 C -0.242 4.242 5 C -0.020 4.020 6 C 0.041 3.959 7 C -0.538 4.538 8 H 0.063 0.937 9 C -0.002 4.002 10 N -0.936 5.936 11 Si 0.965 3.035 12 H -0.259 1.259 13 H -0.279 1.279 14 H -0.279 1.279 15 C 0.096 3.904 16 C -0.108 4.108 17 C -0.158 4.158 18 C -0.143 4.143 19 N -0.325 5.325 20 H 0.090 0.910 21 H 0.110 0.890 22 H 0.089 0.911 23 H 0.199 0.801 24 H 0.061 0.939 25 H 0.055 0.945 26 H -0.016 1.016 27 H -0.016 1.016 28 H 0.262 0.738 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.393 -5.931 9.296 14.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.165 5.165 3 C -0.095 4.095 4 C -0.253 4.253 5 C -0.059 4.059 6 C 0.004 3.996 7 C -0.576 4.576 8 H 0.081 0.919 9 C -0.199 4.199 10 N -0.577 5.577 11 Si 0.789 3.211 12 H -0.183 1.183 13 H -0.205 1.205 14 H -0.205 1.205 15 C -0.068 4.068 16 C -0.128 4.128 17 C -0.195 4.195 18 C -0.181 4.181 19 N -0.148 5.148 20 H 0.108 0.892 21 H 0.128 0.872 22 H 0.108 0.892 23 H 0.216 0.784 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.002 0.998 27 H 0.002 0.998 28 H 0.070 0.930 29 H 0.126 0.874 30 H 0.111 0.889 31 H 0.131 0.869 32 H 0.138 0.862 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.375 -6.914 9.126 15.451 hybrid contribution 1.149 1.335 -0.619 1.867 sum -9.226 -5.579 8.506 13.733 Atomic orbital electron populations 1.22158 0.71751 1.05685 1.04612 1.48630 1.07700 1.02971 1.57216 1.22674 0.90228 0.94483 1.02100 1.20381 0.95927 0.93774 1.15227 1.19755 0.92312 0.96439 0.97383 1.18880 0.94183 0.94331 0.92198 1.21772 1.12307 1.30381 0.93153 0.91866 1.25995 1.00934 0.97762 0.95205 1.70137 1.42329 1.46796 0.98396 0.85402 0.78726 0.78261 0.78676 1.18315 1.20528 1.20470 1.21462 0.92479 0.93339 0.99524 1.20346 0.94593 0.90774 1.07124 1.22983 1.03159 0.93415 0.99975 1.23011 1.03678 1.00391 0.90978 1.77011 1.01137 1.09279 1.27382 0.89195 0.87185 0.89226 0.78375 0.91987 0.92672 0.99778 0.99790 0.92952 0.87382 0.88869 0.86924 0.86236 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.78 11.47 127.77 1.47 3.24 16 2 N -0.38 -11.78 4.01 -369.56 -1.48 -13.27 16 3 C 0.05 1.69 11.40 83.54 0.95 2.64 16 4 C -0.24 -9.69 5.35 -20.14 -0.11 -9.80 16 5 C -0.02 -0.89 5.41 29.85 0.16 -0.73 16 6 C 0.04 2.28 4.95 29.85 0.15 2.42 16 7 C -0.54 -31.16 9.11 25.60 0.23 -30.93 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 10 N -0.94 -58.37 13.29 21.45 0.28 -58.08 16 11 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 12 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 15 C 0.10 3.76 6.75 43.10 0.29 4.06 16 16 C -0.11 -3.80 5.99 -11.54 -0.07 -3.87 16 17 C -0.16 -4.49 10.14 30.60 0.31 -4.18 16 18 C -0.14 -3.84 10.23 30.59 0.31 -3.53 16 19 N -0.32 -11.88 12.15 -47.39 -0.58 -12.46 16 20 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 21 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.20 5.14 8.06 -2.91 -0.02 5.12 16 24 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.05 2.38 8.09 -2.39 -0.02 2.36 16 26 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 27 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 28 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 29 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 30 H 0.09 2.73 7.89 -2.39 -0.02 2.71 16 31 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.12 2.67 8.14 -2.38 -0.02 2.65 16 33 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -72.46 288.10 5.48 -66.97 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 1.07 Total: 10.40 kcal Atomic # 6 Polarization: -44.48 SS G_CDS: 4.16 Total: -40.32 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -1.77 Total: -83.81 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -72.46 5.48 -66.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261202560.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.519 kcal (2) G-P(sol) polarization free energy of solvation -72.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds