Wall clock time and date at job start Mon Mar 30 2020 02:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47205 * 2 1 4 4 N 1.46501 * 109.46951 * 120.00389 * 2 1 3 5 5 C 1.34994 * 126.41663 * 300.03859 * 4 2 1 6 6 N 1.30407 * 108.70435 * 179.97438 * 5 4 2 7 7 C 1.34488 * 109.30246 * 0.05308 * 6 5 4 8 8 C 1.34429 * 107.86265 * 359.95268 * 7 6 5 9 9 C 1.51175 * 110.53622 * 180.02562 * 8 7 6 10 10 H 1.09003 * 110.43920 * 102.07262 * 9 8 7 11 11 C 1.50703 * 110.34864 * 224.29567 * 9 8 7 12 12 H 1.07994 * 119.99603 * 356.96781 * 11 9 8 13 13 C 1.37875 * 119.99838 * 176.96925 * 11 9 8 14 14 N 1.31513 * 120.00380 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99848 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47297 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47261 * 239.99776 * 15 13 11 18 18 H 1.48500 * 109.47454 * 119.99769 * 15 13 11 19 19 C 1.54480 * 104.93842 * 343.16064 * 9 8 7 20 20 C 1.51378 * 141.86500 * 179.97438 * 7 6 5 21 21 H 1.08997 * 109.47203 * 300.00325 * 1 2 3 22 22 H 1.08998 * 109.46761 * 59.99853 * 1 2 3 23 23 H 1.09003 * 109.47217 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46853 * 239.99919 * 2 1 3 25 25 H 1.08996 * 109.47028 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.47137 * 300.00255 * 3 2 1 27 27 H 1.09002 * 109.46538 * 60.00152 * 3 2 1 28 28 H 1.07997 * 125.64788 * 359.97438 * 5 4 2 29 29 H 0.97001 * 119.99667 * 0.02562 * 14 13 11 30 30 H 1.09000 * 110.94825 * 143.67927 * 19 9 8 31 31 H 1.08993 * 110.94481 * 267.38409 * 19 9 8 32 32 H 1.08991 * 110.33608 * 77.95545 * 20 7 6 33 33 H 1.08997 * 110.33430 * 315.71393 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7728 -0.3448 2.4777 6 7 2.3736 -1.1951 3.2629 7 6 3.0212 -2.1079 2.5171 8 6 2.8100 -1.8085 1.2237 9 6 3.5141 -2.8019 0.3277 10 1 2.8031 -3.5259 -0.0705 11 6 4.2173 -2.0866 -0.7970 12 1 4.1263 -1.0150 -0.8958 13 6 4.9769 -2.8002 -1.6996 14 7 5.0881 -4.1050 -1.5790 15 14 5.8492 -1.9134 -3.0932 16 1 5.5667 -0.4580 -3.0075 17 1 5.3612 -2.4360 -4.3948 18 1 7.3127 -2.1412 -2.9857 19 6 4.5413 -3.5051 1.2425 20 6 3.8936 -3.3394 2.6348 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9562 0.8900 28 1 1.1773 0.4968 2.7994 29 1 4.6355 -4.5655 -0.8551 30 1 4.6390 -4.5587 0.9809 31 1 5.5079 -3.0034 1.2006 32 1 3.2866 -4.2120 2.8759 33 1 4.6607 -3.1890 3.3944 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261206014.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:12 Heat of formation + Delta-G solvation = 53.387857 kcal Electronic energy + Delta-G solvation = -15337.999594 eV Core-core repulsion = 12978.398557 eV Total energy + Delta-G solvation = -2359.601038 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.59550 -36.42184 -35.17206 -32.26627 -30.36906 -27.24166 -27.18791 -26.68130 -23.66593 -22.40989 -20.71256 -19.08735 -18.63458 -16.92518 -15.98674 -14.99211 -14.32055 -13.96461 -13.82970 -13.76938 -12.96657 -12.82281 -12.54677 -12.20490 -12.12116 -11.43376 -11.29765 -11.22858 -10.97235 -10.90275 -10.65138 -10.28708 -10.19773 -9.91802 -9.01880 -8.85129 -8.63483 -8.40708 -7.22374 -6.40082 -4.15778 2.87231 3.34589 3.37864 3.41168 3.53535 3.84614 4.45839 4.84691 4.89645 5.11696 5.16518 5.28497 5.39585 5.54971 5.73207 5.77674 5.81038 5.94718 6.06609 6.12151 6.23802 6.26749 6.43004 6.67126 6.85501 6.89048 7.11331 7.24297 7.47209 7.54960 8.02883 8.09932 8.32714 8.77640 8.85011 9.55317 10.95942 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.024458 B = 0.012128 C = 0.008915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.566396 B = 2308.196215 C = 3140.121612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.124 3.876 3 C -0.158 4.158 4 N -0.434 5.434 5 C 0.152 3.848 6 N -0.485 5.485 7 C -0.062 4.062 8 C 0.017 3.983 9 C 0.107 3.893 10 H 0.034 0.966 11 C -0.595 4.595 12 H 0.048 0.952 13 C 0.024 3.976 14 N -0.909 5.909 15 Si 1.070 2.930 16 H -0.291 1.291 17 H -0.287 1.287 18 H -0.286 1.286 19 C -0.103 4.103 20 C -0.029 4.029 21 H 0.059 0.941 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.112 0.888 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.193 0.807 29 H 0.274 0.726 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.487 7.151 1.886 9.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.020 3.980 3 C -0.215 4.215 4 N -0.118 5.118 5 C -0.128 4.128 6 N -0.203 5.203 7 C -0.189 4.189 8 C -0.100 4.100 9 C 0.088 3.912 10 H 0.051 0.949 11 C -0.633 4.633 12 H 0.067 0.933 13 C -0.181 4.181 14 N -0.545 5.545 15 Si 0.899 3.101 16 H -0.217 1.217 17 H -0.213 1.213 18 H -0.212 1.212 19 C -0.142 4.142 20 C -0.067 4.067 21 H 0.078 0.922 22 H 0.091 0.909 23 H 0.080 0.920 24 H 0.130 0.870 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.210 0.790 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.587 7.024 1.322 9.072 hybrid contribution -1.113 0.506 0.508 1.324 sum -6.700 7.531 1.830 10.244 Atomic orbital electron populations 1.22144 0.94176 1.02816 1.02467 1.21445 0.94372 0.93849 0.88286 1.22114 1.02579 0.94606 1.02243 1.44793 1.38388 1.21697 1.06910 1.24401 1.06569 1.02898 0.78978 1.69512 1.12204 1.04646 1.33973 1.21389 1.06339 1.00599 0.90545 1.22418 0.97020 0.90607 0.99910 1.18093 0.91769 0.89718 0.91647 0.94864 1.21923 1.34036 0.94990 1.12389 0.93327 1.25742 0.95905 0.96143 1.00317 1.70744 1.41962 1.08210 1.33618 0.83518 0.76565 0.74465 0.75557 1.21690 1.21316 1.21206 1.22566 0.99385 1.00251 0.91999 1.20415 0.95742 0.91623 0.98950 0.92239 0.90923 0.91984 0.86989 0.91579 0.91002 0.92363 0.79033 0.91365 0.91427 0.91277 0.91975 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.24 37.16 0.34 -1.65 16 2 C 0.12 1.99 3.59 -67.93 -0.24 1.75 16 3 C -0.16 -2.14 9.24 37.16 0.34 -1.79 16 4 N -0.43 -8.53 2.62 -106.80 -0.28 -8.81 16 5 C 0.15 2.84 11.55 -90.50 -1.05 1.80 16 6 N -0.48 -10.64 11.26 -10.67 -0.12 -10.76 16 7 C -0.06 -1.42 7.98 -82.44 -0.66 -2.07 16 8 C 0.02 0.39 6.86 -81.39 -0.56 -0.17 16 9 C 0.11 2.67 2.47 -91.91 -0.23 2.44 16 10 H 0.03 0.88 8.05 -51.93 -0.42 0.46 16 11 C -0.60 -15.92 8.13 -34.44 -0.28 -16.20 16 12 H 0.05 1.31 7.40 -52.49 -0.39 0.92 16 13 C 0.02 0.65 5.33 -17.82 -0.09 0.56 16 14 N -0.91 -25.93 13.41 55.43 0.74 -25.19 16 15 Si 1.07 24.31 29.90 -169.99 -5.08 19.23 16 16 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 19 C -0.10 -2.37 5.54 -25.19 -0.14 -2.51 16 20 C -0.03 -0.60 6.79 -26.79 -0.18 -0.78 16 21 H 0.06 0.67 7.95 -51.93 -0.41 0.26 16 22 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.11 2.07 7.37 -51.93 -0.38 1.69 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.69 7.95 -51.93 -0.41 0.28 16 28 H 0.19 2.73 8.06 -52.49 -0.42 2.31 16 29 H 0.27 7.67 5.44 -40.82 -0.22 7.45 16 30 H 0.07 1.52 6.83 -51.93 -0.35 1.16 16 31 H 0.07 1.69 7.91 -51.93 -0.41 1.28 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 271.02 15.07 4.08 4.08 Total: -1.00 -30.81 271.02 -8.15 -38.97 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -4.76 Total: 1.12 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -2.74 Total: -18.63 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.34 Total: -44.76 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -5.08 Total: 19.23 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.81 -8.15 -38.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261206014.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.354 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds