Wall clock time and date at job start Mon Mar 30 2020 02:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47205 * 2 1 4 4 N 1.46501 * 109.46951 * 120.00389 * 2 1 3 5 5 C 1.34994 * 126.41663 * 300.03859 * 4 2 1 6 6 N 1.30407 * 108.70435 * 179.97438 * 5 4 2 7 7 C 1.34488 * 109.30246 * 0.05308 * 6 5 4 8 8 C 1.34429 * 107.86265 * 359.95268 * 7 6 5 9 9 C 1.51175 * 110.53622 * 180.02562 * 8 7 6 10 10 H 1.09003 * 110.43920 * 102.07262 * 9 8 7 11 11 C 1.50703 * 110.34864 * 224.29567 * 9 8 7 12 12 H 1.07994 * 119.99603 * 356.96781 * 11 9 8 13 13 C 1.37875 * 119.99838 * 176.96925 * 11 9 8 14 14 N 1.31513 * 120.00380 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99848 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47297 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47261 * 239.99776 * 15 13 11 18 18 H 1.48500 * 109.47454 * 119.99769 * 15 13 11 19 19 C 1.54480 * 104.93842 * 343.16064 * 9 8 7 20 20 C 1.51378 * 141.86500 * 179.97438 * 7 6 5 21 21 H 1.08997 * 109.47203 * 300.00325 * 1 2 3 22 22 H 1.08998 * 109.46761 * 59.99853 * 1 2 3 23 23 H 1.09003 * 109.47217 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46853 * 239.99919 * 2 1 3 25 25 H 1.08996 * 109.47028 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.47137 * 300.00255 * 3 2 1 27 27 H 1.09002 * 109.46538 * 60.00152 * 3 2 1 28 28 H 1.07997 * 125.64788 * 359.97438 * 5 4 2 29 29 H 0.97001 * 119.99667 * 0.02562 * 14 13 11 30 30 H 1.09000 * 110.94825 * 143.67927 * 19 9 8 31 31 H 1.08993 * 110.94481 * 267.38409 * 19 9 8 32 32 H 1.08991 * 110.33608 * 77.95545 * 20 7 6 33 33 H 1.08997 * 110.33430 * 315.71393 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7728 -0.3448 2.4777 6 7 2.3736 -1.1951 3.2629 7 6 3.0212 -2.1079 2.5171 8 6 2.8100 -1.8085 1.2237 9 6 3.5141 -2.8019 0.3277 10 1 2.8031 -3.5259 -0.0705 11 6 4.2173 -2.0866 -0.7970 12 1 4.1263 -1.0150 -0.8958 13 6 4.9769 -2.8002 -1.6996 14 7 5.0881 -4.1050 -1.5790 15 14 5.8492 -1.9134 -3.0932 16 1 5.5667 -0.4580 -3.0075 17 1 5.3612 -2.4360 -4.3948 18 1 7.3127 -2.1412 -2.9857 19 6 4.5413 -3.5051 1.2425 20 6 3.8936 -3.3394 2.6348 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9562 0.8900 28 1 1.1773 0.4968 2.7994 29 1 4.6355 -4.5655 -0.8551 30 1 4.6390 -4.5587 0.9809 31 1 5.5079 -3.0034 1.2006 32 1 3.2866 -4.2120 2.8759 33 1 4.6607 -3.1890 3.3944 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261206014.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:12 Heat of formation + Delta-G solvation = 36.818050 kcal Electronic energy + Delta-G solvation = -15338.718115 eV Core-core repulsion = 12978.398557 eV Total energy + Delta-G solvation = -2360.319559 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.20167 -38.09942 -36.68967 -34.22712 -31.85550 -29.08261 -28.42347 -28.23623 -25.63918 -23.82958 -22.42491 -20.73818 -20.29833 -18.80636 -17.55689 -16.65767 -15.73291 -15.61685 -15.52251 -15.23462 -14.72315 -14.22356 -14.01850 -13.81091 -13.16517 -13.12974 -12.88064 -12.78663 -12.56300 -12.39253 -12.24273 -12.00556 -11.93766 -11.75995 -10.85716 -10.61376 -10.45083 -10.30763 -8.97561 -8.54796 -6.33294 1.25309 1.52176 1.60223 1.75365 1.88410 2.19166 2.55571 3.18248 3.31694 3.66709 3.74899 3.97133 4.14435 4.15900 4.32161 4.40295 4.57977 4.62266 4.71306 4.75933 4.81353 4.92980 4.99525 5.08787 5.19266 5.22555 5.24318 5.43958 5.65960 5.82136 6.03482 6.16930 6.52232 6.65485 7.20552 7.45123 8.79665 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.024458 B = 0.012128 C = 0.008915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.566396 B = 2308.196215 C = 3140.121612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.115 3.885 3 C -0.150 4.150 4 N -0.435 5.435 5 C 0.177 3.823 6 N -0.515 5.515 7 C -0.074 4.074 8 C -0.023 4.023 9 C 0.104 3.896 10 H 0.006 0.994 11 C -0.600 4.600 12 H 0.040 0.960 13 C -0.021 4.021 14 N -0.933 5.933 15 Si 1.113 2.887 16 H -0.276 1.276 17 H -0.278 1.278 18 H -0.281 1.281 19 C -0.093 4.093 20 C -0.023 4.023 21 H 0.082 0.918 22 H 0.100 0.900 23 H 0.042 0.958 24 H 0.076 0.924 25 H 0.036 0.964 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.244 0.756 29 H 0.266 0.734 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.613 9.323 2.141 12.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.012 3.988 3 C -0.207 4.207 4 N -0.117 5.117 5 C -0.104 4.104 6 N -0.234 5.234 7 C -0.201 4.201 8 C -0.140 4.140 9 C 0.084 3.916 10 H 0.023 0.977 11 C -0.638 4.638 12 H 0.058 0.942 13 C -0.221 4.221 14 N -0.570 5.570 15 Si 0.936 3.064 16 H -0.201 1.201 17 H -0.204 1.204 18 H -0.207 1.207 19 C -0.132 4.132 20 C -0.061 4.061 21 H 0.101 0.899 22 H 0.119 0.881 23 H 0.062 0.938 24 H 0.095 0.905 25 H 0.055 0.945 26 H 0.119 0.881 27 H 0.101 0.899 28 H 0.260 0.740 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.728 9.200 1.572 11.506 hybrid contribution -0.847 -0.112 0.451 0.966 sum -7.576 9.088 2.023 12.003 Atomic orbital electron populations 1.22105 0.91006 1.02435 1.05045 1.21717 0.96805 0.94531 0.85700 1.22091 1.00651 0.93040 1.04943 1.45090 1.37452 1.20763 1.08433 1.25389 1.04418 1.02482 0.78111 1.69537 1.13676 1.05492 1.34679 1.21709 1.06478 1.01164 0.90761 1.22201 0.99621 0.92687 0.99454 1.17941 0.91692 0.89956 0.91970 0.97668 1.22124 1.33866 0.94632 1.13130 0.94205 1.27045 0.96410 0.96172 1.02468 1.70840 1.43107 1.09048 1.33998 0.82961 0.75775 0.74318 0.73323 1.20111 1.20369 1.20689 1.22341 0.97999 0.99516 0.93350 1.20366 0.96103 0.91996 0.97640 0.89880 0.88096 0.93839 0.90531 0.94512 0.88122 0.89855 0.74049 0.92244 0.91635 0.93313 0.90310 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.24 71.98 0.67 -2.63 16 2 C 0.11 3.51 3.59 44.99 0.16 3.68 16 3 C -0.15 -3.63 9.24 71.98 0.67 -2.96 16 4 N -0.43 -16.59 2.62 -491.81 -1.29 -17.88 16 5 C 0.18 6.13 11.55 180.31 2.08 8.21 16 6 N -0.51 -21.72 11.26 -187.67 -2.11 -23.83 16 7 C -0.07 -3.39 7.98 41.50 0.33 -3.06 16 8 C -0.02 -1.07 6.86 41.03 0.28 -0.79 16 9 C 0.10 5.39 2.47 -11.63 -0.03 5.36 16 10 H 0.01 0.31 8.05 -2.39 -0.02 0.29 16 11 C -0.60 -33.07 8.13 25.60 0.21 -32.86 16 12 H 0.04 2.21 7.40 -2.91 -0.02 2.19 16 13 C -0.02 -1.18 5.33 84.65 0.45 -0.73 16 14 N -0.93 -54.61 13.41 21.45 0.29 -54.33 16 15 Si 1.11 49.16 29.90 68.60 2.05 51.21 16 16 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 17 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 18 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 19 C -0.09 -4.43 5.54 31.59 0.18 -4.25 16 20 C -0.02 -0.95 6.79 30.56 0.21 -0.74 16 21 H 0.08 1.47 7.95 -2.39 -0.02 1.45 16 22 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.08 2.88 7.37 -2.39 -0.02 2.86 16 25 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.08 1.60 7.95 -2.39 -0.02 1.59 16 28 H 0.24 5.59 8.06 -2.91 -0.02 5.56 16 29 H 0.27 15.52 5.44 -92.71 -0.50 15.01 16 30 H 0.07 3.08 6.83 -2.39 -0.02 3.06 16 31 H 0.05 2.47 7.91 -2.39 -0.02 2.45 16 32 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 33 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -68.35 271.02 5.48 -62.87 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 1.35 Total: 12.74 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 5.20 Total: -30.78 kcal Atomic # 7 Polarization: -92.93 SS G_CDS: -3.11 Total: -96.04 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 2.05 Total: 51.21 kcal Total: -68.35 5.48 -62.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261206014.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.688 kcal (2) G-P(sol) polarization free energy of solvation -68.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds