Wall clock time and date at job start Mon Mar 30 2020 03:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.39169 * 119.99838 * 179.97438 * 2 1 3 5 5 C 1.39505 * 120.86161 * 179.72094 * 4 2 1 6 6 C 1.37873 * 119.06247 * 179.70827 * 5 4 2 7 7 N 1.32009 * 120.84628 * 0.58681 * 6 5 4 8 8 C 1.31977 * 121.90856 * 359.71111 * 7 6 5 9 9 C 1.50704 * 119.57803 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.47044 * 304.97648 * 9 8 7 11 11 C 1.50702 * 109.47401 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99753 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00412 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00267 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 119.99769 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.46715 * 90.00684 * 15 13 11 17 17 H 1.48503 * 109.46886 * 210.00080 * 15 13 11 18 18 H 1.48498 * 109.47337 * 330.00232 * 15 13 11 19 19 C 1.37920 * 120.84391 * 359.97438 * 8 7 6 20 20 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 21 21 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 22 22 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 23 23 H 1.09000 * 109.47202 * 89.99334 * 3 2 1 24 24 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 25 25 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 26 26 H 1.07993 * 120.46384 * 0.02562 * 5 4 2 27 27 H 1.08006 * 119.57445 * 180.29566 * 6 5 4 28 28 H 1.09002 * 109.47104 * 64.97658 * 9 8 7 29 29 H 1.08997 * 109.47001 * 184.97629 * 9 8 7 30 30 H 1.09002 * 109.47179 * 299.99964 * 10 9 8 31 31 H 1.08997 * 109.47237 * 60.00126 * 10 9 8 32 32 H 0.97003 * 120.00038 * 179.97438 * 14 13 11 33 33 H 1.07993 * 120.46500 * 180.02562 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1608 -1.2053 0.0005 5 6 3.5557 -1.2263 -0.0053 6 6 4.2072 -2.4413 0.0016 7 7 3.5283 -3.5734 0.0019 8 6 2.2087 -3.5955 0.0014 9 6 1.4868 -4.9183 0.0024 10 6 1.9688 -5.7632 -1.1785 11 6 1.2465 -7.0859 -1.1779 12 1 0.5163 -7.3020 -0.4121 13 6 1.5178 -8.0200 -2.1550 14 7 0.8870 -9.1740 -2.1548 15 14 2.7802 -7.6459 -3.4800 16 1 4.1211 -8.0956 -3.0272 17 1 2.4139 -8.3612 -4.7288 18 1 2.8092 -6.1837 -3.7375 19 6 1.4819 -2.4233 0.0010 20 1 -0.3634 0.0000 1.0277 21 1 -0.3633 -0.8900 -0.5138 22 1 -0.3633 0.8900 -0.5139 23 1 2.3791 1.5834 1.0277 24 1 3.1499 1.1384 -0.5137 25 1 1.6085 2.0284 -0.5138 26 1 4.1172 -0.3038 -0.0099 27 1 5.2870 -2.4672 0.0020 28 1 1.6939 -5.4446 0.9342 29 1 0.4141 -4.7469 -0.0873 30 1 1.7616 -5.2370 -2.1103 31 1 3.0414 -5.9347 -1.0887 32 1 1.0777 -9.8311 -2.8424 33 1 0.4023 -2.4485 0.0010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261209251.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:39 Heat of formation + Delta-G solvation = 35.105646 kcal Electronic energy + Delta-G solvation = -14321.900215 eV Core-core repulsion = 11961.506401 eV Total energy + Delta-G solvation = -2360.393814 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.03847 -36.99443 -33.97615 -32.07841 -30.95212 -29.88482 -28.28047 -25.74671 -24.87206 -22.38803 -21.31391 -19.67146 -17.29166 -16.54130 -16.39173 -15.33576 -15.11160 -14.43212 -14.19730 -13.97301 -13.47302 -13.20227 -12.78199 -12.76407 -12.49350 -12.27872 -12.10213 -11.39027 -11.07715 -10.91150 -10.45194 -10.00351 -9.88013 -9.67196 -9.08801 -8.84117 -8.48523 -8.42744 -7.61434 -5.95588 -3.92617 1.56526 1.85079 2.96915 3.41030 3.46825 3.54382 4.27158 4.55724 4.75060 4.83286 4.86565 5.08724 5.22212 5.25487 5.38463 5.39984 5.42167 5.51585 5.63896 5.71010 6.07533 6.09181 6.20939 6.48871 6.52777 6.88237 7.02236 7.11403 7.38399 7.45234 7.60148 7.89755 8.61660 8.64027 9.09118 9.67992 11.17854 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.042394 B = 0.006168 C = 0.005848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.309616 B = 4538.266477 C = 4786.659727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.633 5.633 3 C 0.094 3.906 4 C 0.245 3.755 5 C -0.270 4.270 6 C 0.139 3.861 7 N -0.516 5.516 8 C 0.187 3.813 9 C -0.060 4.060 10 C -0.003 4.003 11 C -0.519 4.519 12 H 0.072 0.928 13 C 0.067 3.933 14 N -0.906 5.906 15 Si 0.879 3.121 16 H -0.276 1.276 17 H -0.290 1.290 18 H -0.266 1.266 19 C -0.252 4.252 20 H 0.049 0.951 21 H 0.073 0.927 22 H 0.065 0.935 23 H 0.047 0.953 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.125 0.875 27 H 0.148 0.852 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.011 0.989 31 H 0.026 0.974 32 H 0.262 0.738 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.139 21.342 4.113 21.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.346 5.346 3 C -0.049 4.049 4 C 0.136 3.864 5 C -0.295 4.295 6 C -0.018 4.018 7 N -0.229 5.229 8 C 0.051 3.949 9 C -0.097 4.097 10 C -0.041 4.041 11 C -0.557 4.557 12 H 0.090 0.910 13 C -0.134 4.134 14 N -0.546 5.546 15 Si 0.707 3.293 16 H -0.202 1.202 17 H -0.216 1.216 18 H -0.191 1.191 19 C -0.277 4.277 20 H 0.067 0.933 21 H 0.091 0.909 22 H 0.084 0.916 23 H 0.066 0.934 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.143 0.857 27 H 0.166 0.834 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.030 0.970 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.456 20.562 4.015 21.093 hybrid contribution 0.166 1.059 -0.769 1.319 sum 2.623 21.621 3.246 22.020 Atomic orbital electron populations 1.21682 0.79249 1.02897 1.01329 1.46203 1.05210 1.03095 1.80048 1.21632 0.97353 0.84797 1.01107 1.18033 0.91377 0.85814 0.91198 1.21510 0.92617 0.99937 1.15455 1.22479 0.99833 0.87185 0.92345 1.67632 1.08813 1.29693 1.16751 1.21590 0.89371 0.95546 0.88390 1.20601 0.97630 0.89684 1.01829 1.19475 0.97320 0.94797 0.92459 1.21173 1.23295 0.98261 1.12923 0.90980 1.24982 0.95927 0.94821 0.97632 1.69919 1.42727 1.06949 1.34987 0.86777 0.82201 0.78935 0.81401 1.20167 1.21591 1.19066 1.21539 1.00919 0.91280 1.13965 0.93274 0.90867 0.91579 0.93444 0.91261 0.91600 0.85717 0.83441 0.90504 0.91290 0.97047 0.95542 0.92847 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.84 10.26 59.85 0.61 1.46 16 2 N -0.63 -7.22 3.39 -187.35 -0.64 -7.85 16 3 C 0.09 0.77 10.27 59.85 0.61 1.38 16 4 C 0.24 3.56 6.58 -83.61 -0.55 3.01 16 5 C -0.27 -3.74 9.27 -39.24 -0.36 -4.11 16 6 C 0.14 2.18 11.17 -17.61 -0.20 1.98 16 7 N -0.52 -10.12 9.88 -9.57 -0.09 -10.22 16 8 C 0.19 3.63 6.17 -82.64 -0.51 3.12 16 9 C -0.06 -1.27 5.55 -27.88 -0.15 -1.42 16 10 C 0.00 -0.07 3.90 -27.88 -0.11 -0.18 16 11 C -0.52 -15.31 9.66 -34.44 -0.33 -15.64 16 12 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 13 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 14 N -0.91 -28.68 13.96 55.43 0.77 -27.91 16 15 Si 0.88 22.89 27.47 -169.99 -4.67 18.23 16 16 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 18 H -0.27 -6.80 6.54 56.52 0.37 -6.43 16 19 C -0.25 -4.16 8.86 -39.25 -0.35 -4.50 16 20 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 21 H 0.07 0.72 6.26 -51.93 -0.33 0.40 16 22 H 0.07 0.46 7.89 -51.93 -0.41 0.05 16 23 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.07 0.54 6.25 -51.93 -0.32 0.22 16 25 H 0.07 0.41 7.89 -51.93 -0.41 0.00 16 26 H 0.12 1.35 6.27 -52.49 -0.33 1.02 16 27 H 0.15 1.85 8.06 -52.48 -0.42 1.43 16 28 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 29 H 0.07 1.37 7.87 -51.93 -0.41 0.96 16 30 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 31 H 0.03 0.70 7.37 -51.93 -0.38 0.31 16 32 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 33 H 0.13 1.91 6.16 -52.49 -0.32 1.58 16 LS Contribution 274.56 15.07 4.14 4.14 Total: -1.00 -33.92 274.56 -6.49 -40.41 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: -4.56 Total: -3.81 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -1.43 Total: -12.98 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.04 Total: -45.98 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.67 Total: 18.23 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -33.92 -6.49 -40.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261209251.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.516 kcal (2) G-P(sol) polarization free energy of solvation -33.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds