Wall clock time and date at job start Mon Mar 30 2020 03:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.39169 * 119.99838 * 179.97438 * 2 1 3 5 5 C 1.39505 * 120.86161 * 179.72094 * 4 2 1 6 6 C 1.37873 * 119.06247 * 179.70827 * 5 4 2 7 7 N 1.32009 * 120.84628 * 0.58681 * 6 5 4 8 8 C 1.31977 * 121.90856 * 359.71111 * 7 6 5 9 9 C 1.50704 * 119.57803 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.47044 * 304.97648 * 9 8 7 11 11 C 1.50702 * 109.47401 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99753 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00412 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00267 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 119.99769 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.46715 * 90.00684 * 15 13 11 17 17 H 1.48503 * 109.46886 * 210.00080 * 15 13 11 18 18 H 1.48498 * 109.47337 * 330.00232 * 15 13 11 19 19 C 1.37920 * 120.84391 * 359.97438 * 8 7 6 20 20 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 21 21 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 22 22 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 23 23 H 1.09000 * 109.47202 * 89.99334 * 3 2 1 24 24 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 25 25 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 26 26 H 1.07993 * 120.46384 * 0.02562 * 5 4 2 27 27 H 1.08006 * 119.57445 * 180.29566 * 6 5 4 28 28 H 1.09002 * 109.47104 * 64.97658 * 9 8 7 29 29 H 1.08997 * 109.47001 * 184.97629 * 9 8 7 30 30 H 1.09002 * 109.47179 * 299.99964 * 10 9 8 31 31 H 1.08997 * 109.47237 * 60.00126 * 10 9 8 32 32 H 0.97003 * 120.00038 * 179.97438 * 14 13 11 33 33 H 1.07993 * 120.46500 * 180.02562 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1608 -1.2053 0.0005 5 6 3.5557 -1.2263 -0.0053 6 6 4.2072 -2.4413 0.0016 7 7 3.5283 -3.5734 0.0019 8 6 2.2087 -3.5955 0.0014 9 6 1.4868 -4.9183 0.0024 10 6 1.9688 -5.7632 -1.1785 11 6 1.2465 -7.0859 -1.1779 12 1 0.5163 -7.3020 -0.4121 13 6 1.5178 -8.0200 -2.1550 14 7 0.8870 -9.1740 -2.1548 15 14 2.7802 -7.6459 -3.4800 16 1 4.1211 -8.0956 -3.0272 17 1 2.4139 -8.3612 -4.7288 18 1 2.8092 -6.1837 -3.7375 19 6 1.4819 -2.4233 0.0010 20 1 -0.3634 0.0000 1.0277 21 1 -0.3633 -0.8900 -0.5138 22 1 -0.3633 0.8900 -0.5139 23 1 2.3791 1.5834 1.0277 24 1 3.1499 1.1384 -0.5137 25 1 1.6085 2.0284 -0.5138 26 1 4.1172 -0.3038 -0.0099 27 1 5.2870 -2.4672 0.0020 28 1 1.6939 -5.4446 0.9342 29 1 0.4141 -4.7469 -0.0873 30 1 1.7616 -5.2370 -2.1103 31 1 3.0414 -5.9347 -1.0887 32 1 1.0777 -9.8311 -2.8424 33 1 0.4023 -2.4485 0.0010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261209251.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:38 Heat of formation + Delta-G solvation = 12.773038 kcal Electronic energy + Delta-G solvation = -14322.868629 eV Core-core repulsion = 11961.506401 eV Total energy + Delta-G solvation = -2361.362229 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.21516 -38.00077 -35.85176 -34.02884 -32.05568 -31.41772 -29.21547 -27.29142 -26.07614 -23.61535 -23.01671 -21.09654 -19.03288 -18.09158 -17.52570 -16.38350 -16.31988 -16.01969 -15.53733 -15.10970 -14.98312 -14.68032 -14.38612 -14.30127 -13.48891 -13.33147 -13.06191 -12.94000 -12.88516 -12.26238 -11.89791 -11.88430 -11.70034 -11.40552 -11.32498 -10.76118 -10.14659 -9.78859 -8.56815 -8.29367 -6.32238 0.34065 0.67672 1.34601 1.35619 1.49041 2.13193 2.36508 3.02401 3.06205 3.59142 3.82795 4.03654 4.23220 4.35766 4.42306 4.49451 4.56605 4.62963 4.69292 4.78702 4.85472 4.87874 4.93738 5.06507 5.10709 5.17241 5.41535 5.57523 5.61902 5.83577 6.24450 6.28330 6.37589 6.74314 7.31997 7.38527 8.87272 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.042394 B = 0.006168 C = 0.005848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.309616 B = 4538.266477 C = 4786.659727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.632 5.632 3 C 0.086 3.914 4 C 0.244 3.756 5 C -0.259 4.259 6 C 0.128 3.872 7 N -0.559 5.559 8 C 0.160 3.840 9 C -0.052 4.052 10 C 0.008 3.992 11 C -0.531 4.531 12 H 0.039 0.961 13 C 0.010 3.990 14 N -0.948 5.948 15 Si 0.947 3.053 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.258 1.258 19 C -0.259 4.259 20 H 0.056 0.944 21 H 0.062 0.938 22 H 0.093 0.907 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.160 0.840 27 H 0.175 0.825 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.007 0.993 31 H 0.017 0.983 32 H 0.267 0.733 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.196 24.537 3.483 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.342 5.342 3 C -0.056 4.056 4 C 0.132 3.868 5 C -0.284 4.284 6 C -0.029 4.029 7 N -0.273 5.273 8 C 0.025 3.975 9 C -0.090 4.090 10 C -0.030 4.030 11 C -0.569 4.569 12 H 0.058 0.942 13 C -0.187 4.187 14 N -0.589 5.589 15 Si 0.771 3.229 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.182 1.182 19 C -0.284 4.284 20 H 0.075 0.925 21 H 0.080 0.920 22 H 0.111 0.889 23 H 0.076 0.924 24 H 0.093 0.907 25 H 0.107 0.893 26 H 0.178 0.822 27 H 0.192 0.808 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.026 0.974 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.497 23.801 3.396 24.295 hybrid contribution -0.226 0.188 -0.491 0.573 sum 3.271 23.989 2.905 24.385 Atomic orbital electron populations 1.21862 0.78170 1.03740 1.02082 1.46535 1.06195 1.03044 1.78445 1.21895 0.97765 0.83655 1.02251 1.18166 0.91954 0.86415 0.90290 1.21836 0.92552 1.00648 1.13392 1.22959 1.01075 0.86904 0.91937 1.67508 1.09075 1.32095 1.18652 1.21188 0.89846 0.95076 0.91428 1.20363 0.98338 0.90805 0.99476 1.19288 0.96154 0.93377 0.94138 1.21495 1.22942 1.00317 1.12119 0.94242 1.25891 0.98106 0.94528 1.00191 1.70049 1.44497 1.08112 1.36272 0.85702 0.79490 0.79179 0.78513 1.19260 1.20330 1.18234 1.21558 1.01407 0.91371 1.14056 0.92550 0.91950 0.88861 0.92365 0.90725 0.89285 0.82228 0.80767 0.91636 0.90643 0.97433 0.96432 0.92408 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.26 127.77 1.31 2.61 16 2 N -0.63 -12.24 3.39 -746.65 -2.53 -14.77 16 3 C 0.09 1.03 10.27 127.77 1.31 2.34 16 4 C 0.24 6.48 6.58 38.57 0.25 6.73 16 5 C -0.26 -6.40 9.27 22.49 0.21 -6.19 16 6 C 0.13 3.76 11.17 84.58 0.94 4.71 16 7 N -0.56 -21.75 9.88 -184.19 -1.82 -23.57 16 8 C 0.16 6.24 6.17 42.46 0.26 6.50 16 9 C -0.05 -2.28 5.55 29.85 0.17 -2.12 16 10 C 0.01 0.43 3.90 29.85 0.12 0.54 16 11 C -0.53 -32.40 9.66 25.60 0.25 -32.15 16 12 H 0.04 2.58 7.99 -2.91 -0.02 2.56 16 13 C 0.01 0.60 5.47 84.65 0.46 1.06 16 14 N -0.95 -61.36 13.96 21.45 0.30 -61.06 16 15 Si 0.95 47.53 27.47 68.60 1.88 49.41 16 16 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 17 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 18 H -0.26 -12.54 6.54 99.48 0.65 -11.89 16 19 C -0.26 -8.30 8.86 22.49 0.20 -8.10 16 20 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 21 H 0.06 1.11 6.26 -2.39 -0.01 1.10 16 22 H 0.09 0.95 7.89 -2.38 -0.02 0.93 16 23 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.07 0.83 6.25 -2.39 -0.01 0.81 16 25 H 0.09 0.69 7.89 -2.39 -0.02 0.67 16 26 H 0.16 2.73 6.27 -2.91 -0.02 2.71 16 27 H 0.18 3.93 8.06 -2.91 -0.02 3.91 16 28 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 29 H 0.07 3.11 7.87 -2.39 -0.02 3.09 16 30 H 0.01 0.39 7.20 -2.39 -0.02 0.37 16 31 H 0.02 0.93 7.37 -2.39 -0.02 0.92 16 32 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 33 H 0.14 4.01 6.16 -2.91 -0.02 3.99 16 Total: -1.00 -74.55 274.56 4.35 -70.20 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: 1.03 Total: 3.85 kcal Atomic # 6 Polarization: -29.54 SS G_CDS: 5.48 Total: -24.06 kcal Atomic # 7 Polarization: -95.35 SS G_CDS: -4.05 Total: -99.40 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 1.88 Total: 49.41 kcal Total: -74.55 4.35 -70.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261209251.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.974 kcal (2) G-P(sol) polarization free energy of solvation -74.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds