Wall clock time and date at job start Mon Mar 30 2020 02:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.43309 * 2 1 4 4 C 1.53117 * 109.40180 * 240.12158 * 2 1 3 5 5 C 1.53489 * 109.30859 * 170.02923 * 4 2 1 6 6 C 1.50709 * 108.11346 * 48.49919 * 5 4 2 7 7 C 1.33860 * 128.68269 * 163.85324 * 6 5 4 8 8 C 1.50703 * 126.09921 * 0.77424 * 7 6 5 9 9 C 1.50708 * 109.46925 * 269.70755 * 8 7 6 10 10 H 1.07991 * 119.99789 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00008 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00089 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99938 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 269.99556 * 13 11 9 15 15 H 1.48503 * 109.47261 * 149.99737 * 13 11 9 16 16 H 1.48500 * 109.47454 * 29.99730 * 13 11 9 17 17 N 1.34420 * 107.80213 * 180.50086 * 7 6 5 18 18 C 1.30783 * 109.31891 * 0.22953 * 17 7 6 19 19 N 1.34406 * 108.55452 * 359.93304 * 18 17 7 20 20 C 1.46476 * 128.44540 * 180.19668 * 19 18 17 21 21 H 1.08998 * 109.47513 * 300.08888 * 1 2 3 22 22 H 1.09005 * 109.46881 * 60.09682 * 1 2 3 23 23 H 1.09008 * 109.46671 * 180.08725 * 1 2 3 24 24 H 1.08998 * 109.49739 * 289.98519 * 4 2 1 25 25 H 1.09003 * 109.49893 * 50.04177 * 4 2 1 26 26 H 1.09009 * 109.74152 * 168.33496 * 5 4 2 27 27 H 1.09001 * 109.74495 * 288.99845 * 5 4 2 28 28 H 1.08994 * 109.47874 * 149.70937 * 8 7 6 29 29 H 1.09000 * 109.47408 * 29.70762 * 8 7 6 30 30 H 0.96997 * 119.99848 * 180.02562 * 12 11 9 31 31 H 1.08001 * 125.72616 * 179.90671 * 18 17 7 32 32 H 1.09007 * 109.59750 * 282.44248 * 20 19 18 33 33 H 1.08998 * 109.60216 * 42.75430 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8926 1.0280 0.0000 4 6 2.0386 -0.7195 -1.2523 5 6 3.5528 -0.5044 -1.3813 6 6 4.1843 -0.8049 -0.0463 7 6 5.4719 -1.0363 0.2370 8 6 6.6126 -1.0311 -0.7478 9 6 6.8002 -2.4181 -1.3067 10 1 6.1574 -3.2227 -0.9815 11 6 7.7917 -2.6596 -2.2338 12 7 7.9550 -3.8698 -2.7218 13 14 8.9031 -1.2677 -2.7967 14 1 8.3023 -0.6024 -3.9807 15 1 10.2356 -1.8138 -3.1589 16 1 9.0549 -0.2802 -1.6980 17 7 5.5669 -1.2682 1.5577 18 6 4.3779 -1.1919 2.0969 19 7 3.4877 -0.9066 1.1311 20 6 2.0399 -0.7207 1.2530 21 1 -0.3634 0.5152 0.8891 22 1 -0.3633 0.5124 -0.8909 23 1 -0.3633 -1.0278 0.0016 24 1 1.8282 -1.7858 -1.1699 25 1 1.5370 -0.3167 -2.1323 26 1 3.9563 -1.1736 -2.1414 27 1 3.7556 0.5305 -1.6570 28 1 7.5263 -0.7158 -0.2440 29 1 6.3884 -0.3394 -1.5599 30 1 8.6528 -4.0398 -3.3738 31 1 4.1494 -1.3348 3.1428 32 1 1.5526 -1.6919 1.3400 33 1 1.8213 -0.1214 2.1368 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261209916.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:38 Heat of formation + Delta-G solvation = 41.581901 kcal Electronic energy + Delta-G solvation = -14927.301994 eV Core-core repulsion = 12567.189012 eV Total energy + Delta-G solvation = -2360.112982 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.69475 -37.10896 -33.62932 -32.18784 -31.58769 -29.70490 -26.97703 -25.94024 -23.40590 -22.55557 -20.93099 -19.54847 -18.48533 -16.65131 -16.32208 -15.50318 -14.55846 -14.31256 -14.01948 -13.80955 -13.28451 -13.13482 -12.69671 -12.48901 -12.33735 -11.81876 -11.51468 -11.46170 -10.95064 -10.72673 -10.64853 -10.45266 -10.30421 -9.94288 -9.28074 -9.03872 -8.69719 -8.44009 -7.33507 -5.93393 -3.89687 2.71276 3.27576 3.37838 3.45779 3.51810 3.99669 4.42827 4.54414 4.57498 4.77378 5.17095 5.17913 5.24015 5.29070 5.37184 5.42158 5.52383 5.56755 5.69599 5.81946 5.92212 6.02594 6.16723 6.35192 6.45558 6.52334 7.01888 7.17914 7.35597 7.62614 7.87432 7.91170 8.68090 8.91275 9.13100 9.67863 11.20244 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.039299 B = 0.007851 C = 0.007199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.314016 B = 3565.690466 C = 3888.622614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 H 0.078 0.922 4 C -0.118 4.118 5 C -0.040 4.040 6 C -0.043 4.043 7 C 0.062 3.938 8 C 0.060 3.940 9 C -0.499 4.499 10 H 0.070 0.930 11 C 0.066 3.934 12 N -0.905 5.905 13 Si 0.876 3.124 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.264 1.264 17 N -0.490 5.490 18 C 0.163 3.837 19 N -0.466 5.466 20 C 0.114 3.886 21 H 0.056 0.944 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.030 0.970 29 H 0.023 0.977 30 H 0.262 0.738 31 H 0.194 0.806 32 H 0.076 0.924 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.457 9.129 5.141 18.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 H 0.097 0.903 4 C -0.155 4.155 5 C -0.078 4.078 6 C -0.154 4.154 7 C -0.066 4.066 8 C 0.022 3.978 9 C -0.538 4.538 10 H 0.088 0.912 11 C -0.134 4.134 12 N -0.545 5.545 13 Si 0.703 3.297 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.188 1.188 17 N -0.209 5.209 18 C -0.118 4.118 19 N -0.152 5.152 20 C -0.009 4.009 21 H 0.075 0.925 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.114 0.886 27 H 0.089 0.911 28 H 0.048 0.952 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.211 0.789 32 H 0.095 0.905 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.759 8.863 5.484 18.068 hybrid contribution -0.189 0.623 -0.530 0.839 sum -14.949 9.486 4.954 18.385 Atomic orbital electron populations 1.21774 0.93955 1.02251 1.02137 1.21435 0.96131 1.00288 0.94467 0.90316 1.21726 0.96168 1.00800 0.96836 1.20112 0.93027 1.02117 0.92557 1.20728 0.92580 1.14024 0.88049 1.20687 0.93711 1.01082 0.91100 1.18069 0.90712 0.98068 0.90985 1.20929 1.16750 0.93452 1.22645 0.91218 1.24967 0.96985 0.95438 0.96020 1.69909 1.33541 1.20278 1.30769 0.86828 0.80405 0.83069 0.79381 1.20286 1.21363 1.18824 1.70413 1.21928 1.19888 1.08675 1.24600 0.84603 1.07097 0.95524 1.45206 1.07311 1.54412 1.08287 1.21863 0.78665 1.01121 0.99247 0.92504 0.91901 0.92296 0.91543 0.91011 0.88641 0.91059 0.95162 0.95851 0.92836 0.78887 0.90529 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.16 37.16 0.34 -0.76 16 2 C -0.10 -1.10 2.71 -90.42 -0.25 -1.34 16 3 H 0.08 0.86 8.11 -51.93 -0.42 0.44 16 4 C -0.12 -1.47 5.26 -26.42 -0.14 -1.61 16 5 C -0.04 -0.66 6.00 -27.63 -0.17 -0.82 16 6 C -0.04 -0.85 6.56 -81.73 -0.54 -1.39 16 7 C 0.06 1.49 6.28 -82.99 -0.52 0.97 16 8 C 0.06 1.57 4.43 -29.03 -0.13 1.44 16 9 C -0.50 -15.01 9.65 -34.44 -0.33 -15.35 16 10 H 0.07 2.32 7.98 -52.49 -0.42 1.90 16 11 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 12 N -0.91 -28.67 13.96 55.43 0.77 -27.90 16 13 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16 17 N -0.49 -11.37 11.27 -11.08 -0.12 -11.50 16 18 C 0.16 2.94 12.66 -90.72 -1.15 1.79 16 19 N -0.47 -7.80 3.13 -114.08 -0.36 -8.15 16 20 C 0.11 1.31 6.30 -3.91 -0.02 1.29 16 21 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 24 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 25 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 26 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.03 0.82 7.20 -51.93 -0.37 0.44 16 29 H 0.02 0.58 7.44 -51.93 -0.39 0.19 16 30 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 31 H 0.19 2.56 8.06 -52.49 -0.42 2.14 16 32 H 0.08 0.81 8.13 -51.92 -0.42 0.39 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 271.37 15.07 4.09 4.09 Total: -1.00 -34.85 271.37 -8.28 -43.13 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -4.99 Total: -3.33 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -3.00 Total: -13.88 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.29 Total: -47.55 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -34.85 -8.28 -43.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261209916.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.710 kcal (2) G-P(sol) polarization free energy of solvation -34.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds