Wall clock time and date at job start Mon Mar 30 2020 03:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46903 * 109.47243 * 2 1 4 4 C 1.46899 * 111.00084 * 66.04135 * 3 2 1 5 5 C 1.53000 * 109.47248 * 193.95449 * 4 3 2 6 6 C 1.38407 * 111.00171 * 189.99793 * 3 2 1 7 7 C 1.39210 * 120.99925 * 299.97945 * 6 3 2 8 8 C 1.37995 * 119.32288 * 180.02562 * 7 6 3 9 9 N 1.32289 * 121.45767 * 0.02562 * 8 7 6 10 10 C 1.31467 * 122.22366 * 359.64738 * 9 8 7 11 11 C 1.40651 * 120.46130 * 0.64368 * 10 9 8 12 12 C 1.41113 * 120.73149 * 179.68072 * 11 10 9 13 13 H 1.07996 * 119.99688 * 155.17594 * 12 11 10 14 14 C 1.39929 * 119.99866 * 334.89412 * 12 11 10 15 15 N 1.30871 * 120.00428 * 343.64467 * 14 12 11 16 16 Si 1.86801 * 119.99814 * 163.64369 * 14 12 11 17 17 H 1.48500 * 109.47073 * 90.00182 * 16 14 12 18 18 H 1.48505 * 109.47203 * 210.00133 * 16 14 12 19 19 H 1.48500 * 109.47258 * 330.00020 * 16 14 12 20 20 H 1.08993 * 109.46965 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47235 * 300.00471 * 1 2 3 22 22 H 1.09007 * 109.46611 * 59.99836 * 1 2 3 23 23 H 1.08998 * 109.47613 * 239.99878 * 2 1 3 24 24 H 1.09003 * 109.46928 * 119.99490 * 2 1 3 25 25 H 1.09003 * 109.47430 * 313.95895 * 4 3 2 26 26 H 1.09004 * 109.47051 * 73.95344 * 4 3 2 27 27 H 1.08995 * 109.46864 * 60.00440 * 5 4 3 28 28 H 1.09003 * 109.47098 * 180.02562 * 5 4 3 29 29 H 1.08996 * 109.46892 * 299.99967 * 5 4 3 30 30 H 1.07995 * 120.33921 * 359.97438 * 7 6 3 31 31 H 1.07995 * 119.27009 * 179.97438 * 8 7 6 32 32 H 1.07995 * 119.76664 * 180.31711 * 10 9 8 33 33 H 0.96999 * 120.00586 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0670 1.2532 5 6 1.8769 3.5740 1.0886 6 6 3.3848 1.4285 -0.2243 7 6 4.2740 0.7962 0.6403 8 6 5.6283 0.8621 0.3838 9 7 6.1012 1.5137 -0.6659 10 6 5.3151 2.1260 -1.5234 11 6 3.9203 2.1197 -1.3425 12 6 3.0717 2.7808 -2.2558 13 1 2.0449 2.4643 -2.3650 14 6 3.5589 3.8501 -3.0155 15 7 4.6720 4.4451 -2.6695 16 14 2.6205 4.4284 -4.5236 17 1 1.6462 5.4770 -4.1284 18 1 3.5739 4.9871 -5.5157 19 1 1.8956 3.2807 -5.1257 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 0.6265 1.8678 1.4965 26 1 2.3073 1.6985 2.0573 27 1 1.2397 3.9424 0.2847 28 1 1.6179 4.0800 2.0187 29 1 2.9205 3.7731 0.8455 30 1 3.9077 0.2603 1.5034 31 1 6.3173 0.3717 1.0554 32 1 5.7437 2.6420 -2.3698 33 1 5.0100 5.1861 -3.1963 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261210731.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:32 Heat of formation + Delta-G solvation = 27.069315 kcal Electronic energy + Delta-G solvation = -15290.090107 eV Core-core repulsion = 12929.347811 eV Total energy + Delta-G solvation = -2360.742295 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.98836 -36.53504 -33.94249 -31.31771 -30.60723 -29.67371 -27.56564 -25.24204 -22.65793 -22.24019 -21.13098 -19.42984 -17.35502 -16.11422 -15.34255 -14.87668 -14.60273 -13.98876 -13.70397 -13.41088 -12.89772 -12.67038 -12.04674 -11.81373 -11.71119 -11.44019 -11.20015 -11.17995 -10.91915 -10.77997 -10.69383 -10.56477 -10.21253 -9.99917 -9.32729 -8.03653 -7.90840 -7.51841 -7.47300 -6.84924 -4.37378 2.70784 2.77900 3.06547 3.10666 3.21346 3.90213 4.65673 4.69700 5.45771 5.60833 5.67101 5.82484 5.86972 5.97362 6.06275 6.11760 6.18888 6.23522 6.36549 6.44167 6.55731 6.66408 6.78861 6.95459 7.05258 7.12028 7.33715 7.41967 7.65890 7.86059 8.10977 8.34942 8.53127 8.75278 8.95885 9.77515 10.10272 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.022082 B = 0.012681 C = 0.009697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.712203 B = 2207.492715 C = 2886.764328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.058 3.942 3 N -0.471 5.471 4 C 0.060 3.940 5 C -0.137 4.137 6 C -0.007 4.007 7 C -0.164 4.164 8 C -0.047 4.047 9 N -0.481 5.481 10 C 0.049 3.951 11 C 0.084 3.916 12 C -0.414 4.414 13 H 0.090 0.910 14 C 0.070 3.930 15 N -0.790 5.790 16 Si 0.912 3.088 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.260 1.260 20 H 0.050 0.950 21 H 0.051 0.949 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.022 0.978 25 H 0.063 0.937 26 H 0.023 0.977 27 H 0.060 0.940 28 H 0.041 0.959 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.151 0.849 33 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.393 -2.495 2.427 7.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.069 4.069 3 N -0.191 5.191 4 C -0.067 4.067 5 C -0.195 4.195 6 C -0.109 4.109 7 C -0.186 4.186 8 C -0.199 4.199 9 N -0.190 5.190 10 C -0.118 4.118 11 C 0.078 3.922 12 C -0.444 4.444 13 H 0.108 0.892 14 C -0.148 4.148 15 N -0.415 5.415 16 Si 0.736 3.264 17 H -0.195 1.195 18 H -0.201 1.201 19 H -0.183 1.183 20 H 0.069 0.931 21 H 0.070 0.930 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.040 0.960 25 H 0.081 0.919 26 H 0.041 0.959 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.131 0.869 32 H 0.168 0.832 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.595 -2.061 1.917 6.263 hybrid contribution -0.862 -0.108 0.313 0.923 sum -6.456 -2.169 2.230 7.167 Atomic orbital electron populations 1.21824 0.95813 1.00550 1.02209 1.22045 0.94831 0.89944 1.00126 1.58892 1.12923 1.13851 1.33461 1.22092 0.99019 0.95520 0.90078 1.21617 1.03362 0.94534 0.99985 1.18618 0.86723 1.08050 0.97463 1.21918 0.95694 1.01693 0.99337 1.21431 0.92237 1.06679 0.99530 1.67136 1.41467 1.07092 1.03300 1.23054 0.90320 0.99940 0.98458 1.18423 0.93260 0.90402 0.90077 1.19492 0.98814 1.10797 1.15277 0.89152 1.26070 0.94848 0.95771 0.98141 1.69798 1.19040 1.17174 1.35475 0.86245 0.79915 0.79567 0.80668 1.19455 1.20133 1.18340 0.93121 0.93043 0.91883 0.91226 0.95961 0.91885 0.95893 0.92062 0.94022 0.91990 0.89140 0.86934 0.83165 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.87 37.16 0.37 -1.74 16 2 C 0.06 1.02 5.27 -3.82 -0.02 1.00 16 3 N -0.47 -9.70 3.78 -170.42 -0.64 -10.34 16 4 C 0.06 1.10 5.47 -3.82 -0.02 1.08 16 5 C -0.14 -2.61 9.94 37.16 0.37 -2.24 16 6 C -0.01 -0.17 3.75 -83.11 -0.31 -0.48 16 7 C -0.16 -3.75 8.61 -39.31 -0.34 -4.09 16 8 C -0.05 -1.12 11.15 -17.44 -0.19 -1.31 16 9 N -0.48 -12.61 10.33 -12.68 -0.13 -12.75 16 10 C 0.05 1.31 9.89 -16.80 -0.17 1.14 16 11 C 0.08 2.19 5.60 -106.48 -0.60 1.59 16 12 C -0.41 -10.50 8.75 -37.86 -0.33 -10.83 16 13 H 0.09 2.28 7.66 -52.49 -0.40 1.88 16 14 C 0.07 1.69 5.18 -17.33 -0.09 1.60 16 15 N -0.79 -19.73 10.94 55.55 0.61 -19.12 16 16 Si 0.91 18.17 29.59 -169.99 -5.03 13.14 16 17 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 18 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 19 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 20 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 21 H 0.05 0.70 6.31 -51.93 -0.33 0.37 16 22 H 0.06 0.95 8.14 -51.92 -0.42 0.52 16 23 H 0.07 1.30 8.05 -51.93 -0.42 0.89 16 24 H 0.02 0.38 7.54 -51.93 -0.39 -0.01 16 25 H 0.06 1.01 5.98 -51.93 -0.31 0.70 16 26 H 0.02 0.43 7.12 -51.93 -0.37 0.06 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 1.39 7.52 -51.93 -0.39 1.00 16 30 H 0.09 1.86 7.27 -52.49 -0.38 1.48 16 31 H 0.11 2.39 8.06 -52.49 -0.42 1.97 16 32 H 0.15 4.10 6.17 -52.49 -0.32 3.78 16 33 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 LS Contribution 271.96 15.07 4.10 4.10 Total: -1.00 -26.99 271.96 -6.99 -33.99 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -4.56 Total: 5.26 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -1.33 Total: -14.27 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: -0.17 Total: -42.21 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -26.99 -6.99 -33.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261210731.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.055 kcal (2) G-P(sol) polarization free energy of solvation -26.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds