Wall clock time and date at job start Mon Mar 30 2020 03:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46903 * 109.47243 * 2 1 4 4 C 1.46899 * 111.00084 * 66.04135 * 3 2 1 5 5 C 1.53000 * 109.47248 * 193.95449 * 4 3 2 6 6 C 1.38407 * 111.00171 * 189.99793 * 3 2 1 7 7 C 1.39210 * 120.99925 * 299.97945 * 6 3 2 8 8 C 1.37995 * 119.32288 * 180.02562 * 7 6 3 9 9 N 1.32289 * 121.45767 * 0.02562 * 8 7 6 10 10 C 1.31467 * 122.22366 * 359.64738 * 9 8 7 11 11 C 1.40651 * 120.46130 * 0.64368 * 10 9 8 12 12 C 1.41113 * 120.73149 * 179.68072 * 11 10 9 13 13 H 1.07996 * 119.99688 * 155.17594 * 12 11 10 14 14 C 1.39929 * 119.99866 * 334.89412 * 12 11 10 15 15 N 1.30871 * 120.00428 * 343.64467 * 14 12 11 16 16 Si 1.86801 * 119.99814 * 163.64369 * 14 12 11 17 17 H 1.48500 * 109.47073 * 90.00182 * 16 14 12 18 18 H 1.48505 * 109.47203 * 210.00133 * 16 14 12 19 19 H 1.48500 * 109.47258 * 330.00020 * 16 14 12 20 20 H 1.08993 * 109.46965 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47235 * 300.00471 * 1 2 3 22 22 H 1.09007 * 109.46611 * 59.99836 * 1 2 3 23 23 H 1.08998 * 109.47613 * 239.99878 * 2 1 3 24 24 H 1.09003 * 109.46928 * 119.99490 * 2 1 3 25 25 H 1.09003 * 109.47430 * 313.95895 * 4 3 2 26 26 H 1.09004 * 109.47051 * 73.95344 * 4 3 2 27 27 H 1.08995 * 109.46864 * 60.00440 * 5 4 3 28 28 H 1.09003 * 109.47098 * 180.02562 * 5 4 3 29 29 H 1.08996 * 109.46892 * 299.99967 * 5 4 3 30 30 H 1.07995 * 120.33921 * 359.97438 * 7 6 3 31 31 H 1.07995 * 119.27009 * 179.97438 * 8 7 6 32 32 H 1.07995 * 119.76664 * 180.31711 * 10 9 8 33 33 H 0.96999 * 120.00586 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0670 1.2532 5 6 1.8769 3.5740 1.0886 6 6 3.3848 1.4285 -0.2243 7 6 4.2740 0.7962 0.6403 8 6 5.6283 0.8621 0.3838 9 7 6.1012 1.5137 -0.6659 10 6 5.3151 2.1260 -1.5234 11 6 3.9203 2.1197 -1.3425 12 6 3.0717 2.7808 -2.2558 13 1 2.0449 2.4643 -2.3650 14 6 3.5589 3.8501 -3.0155 15 7 4.6720 4.4451 -2.6695 16 14 2.6205 4.4284 -4.5236 17 1 1.6462 5.4770 -4.1284 18 1 3.5739 4.9871 -5.5157 19 1 1.8956 3.2807 -5.1257 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 0.6265 1.8678 1.4965 26 1 2.3073 1.6985 2.0573 27 1 1.2397 3.9424 0.2847 28 1 1.6179 4.0800 2.0187 29 1 2.9205 3.7731 0.8455 30 1 3.9077 0.2603 1.5034 31 1 6.3173 0.3717 1.0554 32 1 5.7437 2.6420 -2.3698 33 1 5.0100 5.1861 -3.1963 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261210731.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:32 Heat of formation + Delta-G solvation = 11.454798 kcal Electronic energy + Delta-G solvation = -15290.767203 eV Core-core repulsion = 12929.347811 eV Total energy + Delta-G solvation = -2361.419392 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.76418 -38.23752 -35.81160 -32.75265 -32.31328 -31.54963 -29.17157 -27.11953 -24.28381 -23.79346 -22.93028 -21.09288 -19.24769 -17.82882 -17.10933 -16.40936 -16.36182 -15.66106 -15.27983 -15.03723 -14.50278 -14.40872 -13.93382 -13.32166 -13.11783 -13.03638 -12.87776 -12.59399 -12.57974 -12.46113 -12.30086 -12.08423 -11.86026 -11.48487 -11.13894 -9.93810 -9.81232 -9.44528 -9.07786 -8.66490 -6.30322 0.85878 0.91239 1.42173 1.52972 1.58547 2.22563 2.79018 3.17004 3.71821 4.11259 4.20582 4.31522 4.36935 4.42055 4.54182 4.63988 4.73140 4.80424 4.85215 5.00240 5.09228 5.15851 5.18105 5.27158 5.38568 5.41654 5.47199 5.56982 5.79658 6.21105 6.38445 6.44023 6.65990 6.86288 7.11469 7.82467 8.30369 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.022082 B = 0.012681 C = 0.009697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.712203 B = 2207.492715 C = 2886.764328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.056 3.944 3 N -0.488 5.488 4 C 0.061 3.939 5 C -0.130 4.130 6 C 0.006 3.994 7 C -0.166 4.166 8 C -0.055 4.055 9 N -0.501 5.501 10 C 0.016 3.984 11 C 0.057 3.943 12 C -0.434 4.434 13 H 0.086 0.914 14 C 0.033 3.967 15 N -0.821 5.821 16 Si 0.983 3.017 17 H -0.263 1.263 18 H -0.269 1.269 19 H -0.257 1.257 20 H 0.076 0.924 21 H 0.064 0.936 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.033 0.967 25 H 0.096 0.904 26 H 0.025 0.975 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.017 0.983 30 H 0.120 0.880 31 H 0.140 0.860 32 H 0.134 0.866 33 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.408 -3.033 3.230 9.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.070 4.070 3 N -0.209 5.209 4 C -0.065 4.065 5 C -0.188 4.188 6 C -0.096 4.096 7 C -0.188 4.188 8 C -0.209 4.209 9 N -0.210 5.210 10 C -0.148 4.148 11 C 0.051 3.949 12 C -0.464 4.464 13 H 0.104 0.896 14 C -0.183 4.183 15 N -0.446 5.446 16 Si 0.803 3.197 17 H -0.187 1.187 18 H -0.193 1.193 19 H -0.181 1.181 20 H 0.095 0.905 21 H 0.083 0.917 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.051 0.949 25 H 0.114 0.886 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.036 0.964 30 H 0.137 0.863 31 H 0.158 0.842 32 H 0.151 0.849 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.611 -2.595 2.715 8.488 hybrid contribution -0.239 0.004 0.185 0.303 sum -7.850 -2.591 2.900 8.761 Atomic orbital electron populations 1.21759 0.92924 1.02366 1.02379 1.22115 0.97141 0.88031 0.99727 1.58908 1.11038 1.15957 1.35040 1.22169 1.00976 0.94469 0.88933 1.21556 1.00189 0.95790 1.01240 1.18846 0.88573 1.05938 0.96283 1.22175 0.95215 1.01443 1.00011 1.21954 0.93576 1.06154 0.99180 1.67087 1.42014 1.07765 1.04120 1.22850 0.91082 1.01859 0.99013 1.18715 0.93205 0.91471 0.91460 1.19579 0.98600 1.11687 1.16491 0.89579 1.26874 0.95592 0.95349 1.00468 1.69857 1.20420 1.17701 1.36660 0.85186 0.78604 0.79043 0.76833 1.18733 1.19318 1.18119 0.90544 0.91683 0.92810 0.93041 0.94905 0.88555 0.95681 0.92969 0.90813 0.96382 0.86250 0.84248 0.84884 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.87 71.98 0.71 -2.76 16 2 C 0.06 1.87 5.27 86.30 0.45 2.33 16 3 N -0.49 -19.44 3.78 -693.09 -2.62 -22.05 16 4 C 0.06 2.08 5.47 86.30 0.47 2.55 16 5 C -0.13 -4.79 9.94 71.98 0.72 -4.07 16 6 C 0.01 0.27 3.75 39.26 0.15 0.42 16 7 C -0.17 -7.41 8.61 22.45 0.19 -7.21 16 8 C -0.05 -2.60 11.15 84.57 0.94 -1.66 16 9 N -0.50 -26.83 10.33 -194.03 -2.00 -28.84 16 10 C 0.02 0.91 9.89 85.34 0.84 1.76 16 11 C 0.06 3.05 5.60 -21.07 -0.12 2.93 16 12 C -0.43 -22.54 8.75 23.39 0.20 -22.34 16 13 H 0.09 4.41 7.66 -2.91 -0.02 4.39 16 14 C 0.03 1.60 5.18 85.25 0.44 2.05 16 15 N -0.82 -42.29 10.94 21.83 0.24 -42.05 16 16 Si 0.98 37.40 29.59 68.60 2.03 39.43 16 17 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 18 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 19 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 20 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 21 H 0.06 1.47 6.31 -2.39 -0.02 1.46 16 22 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 23 H 0.05 1.87 8.05 -2.39 -0.02 1.85 16 24 H 0.03 1.02 7.54 -2.39 -0.02 1.00 16 25 H 0.10 2.68 5.98 -2.39 -0.01 2.67 16 26 H 0.02 0.85 7.12 -2.38 -0.02 0.84 16 27 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.02 0.79 7.52 -2.39 -0.02 0.77 16 30 H 0.12 4.56 7.27 -2.91 -0.02 4.54 16 31 H 0.14 5.71 8.06 -2.91 -0.02 5.68 16 32 H 0.13 7.70 6.17 -2.91 -0.02 7.68 16 33 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 Total: -1.00 -59.44 271.96 3.74 -55.70 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 1.09 Total: 23.83 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 5.01 Total: -26.02 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -4.38 Total: -92.94 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.03 Total: 39.43 kcal Total: -59.44 3.74 -55.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261210731.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.150 kcal (2) G-P(sol) polarization free energy of solvation -59.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds