Wall clock time and date at job start Mon Mar 30 2020 03:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00425 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00108 * 8 6 4 12 12 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 13 13 C 1.34671 * 125.98911 * 34.71358 * 12 2 1 14 14 N 1.36883 * 106.81522 * 179.85312 * 13 12 2 15 15 C 1.46497 * 126.39428 * 180.19240 * 14 13 12 16 16 C 1.53786 * 113.61228 * 219.41879 * 15 14 13 17 17 C 1.53949 * 87.02030 * 220.04936 * 16 15 14 18 18 C 1.53780 * 113.61392 * 121.81585 * 15 14 13 19 19 C 1.35044 * 107.20412 * 0.41128 * 14 13 12 20 20 N 1.30494 * 108.70365 * 359.74176 * 19 14 13 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 25 25 H 1.07995 * 126.59081 * 359.95992 * 13 12 2 26 26 H 1.09000 * 112.85190 * 350.61663 * 15 14 13 27 27 H 1.08998 * 113.61395 * 334.57261 * 16 15 14 28 28 H 1.09001 * 113.61051 * 105.46844 * 16 15 14 29 29 H 1.09006 * 113.53705 * 270.81131 * 17 16 15 30 30 H 1.08997 * 113.67073 * 139.93490 * 17 16 15 31 31 H 1.09004 * 113.61412 * 254.52348 * 18 15 14 32 32 H 1.08999 * 113.61707 * 25.34854 * 18 15 14 33 33 H 1.08000 * 125.64381 * 179.72455 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 6 2.0324 -0.7105 1.2305 13 6 1.4517 -1.7702 1.8249 14 7 2.2329 -2.0985 2.8999 15 6 1.9965 -3.1933 3.8442 16 6 2.3178 -2.8286 5.3032 17 6 2.9169 -4.2401 5.4398 18 6 3.1553 -4.2014 3.9211 19 6 3.2594 -1.2216 2.9303 20 7 3.1330 -0.3945 1.9289 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.7089 1.1613 -3.4844 25 1 0.5450 -2.2668 1.5124 26 1 1.0198 -3.6597 3.7156 27 1 3.0536 -2.0305 5.4019 28 1 1.4323 -2.6676 5.9181 29 1 2.1916 -4.9928 5.7489 30 1 3.8358 -4.2707 6.0253 31 1 2.9449 -5.1473 3.4219 32 1 4.1203 -3.7798 3.6399 33 1 4.0534 -1.2071 3.6623 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261215473.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:45 Heat of formation + Delta-G solvation = 74.727242 kcal Electronic energy + Delta-G solvation = -14685.747060 eV Core-core repulsion = 12327.071367 eV Total energy + Delta-G solvation = -2358.675693 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.46624 -38.50271 -34.24220 -31.87674 -30.65131 -27.40469 -25.91680 -25.23312 -24.90366 -21.86725 -21.12138 -19.39924 -18.30766 -17.25089 -16.07388 -15.52838 -14.53985 -14.48787 -13.82713 -13.62983 -12.89423 -12.75301 -12.67084 -12.51646 -12.14527 -11.39117 -11.26917 -10.83857 -10.80412 -10.74599 -10.63562 -10.23896 -9.98226 -9.66092 -9.11480 -8.94010 -8.63560 -8.21707 -7.36403 -5.86574 -3.91296 2.76119 3.32802 3.40089 3.43731 3.47365 4.12553 4.23969 4.36152 4.57372 4.58215 4.64685 5.15510 5.25235 5.40789 5.44457 5.47443 5.59430 5.62135 5.69426 5.76436 6.07803 6.38261 6.65343 6.97494 7.02321 7.11677 7.36290 7.70256 7.81985 7.96830 8.12779 8.24294 8.57092 9.04288 9.09842 9.71311 11.19335 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.046163 B = 0.006640 C = 0.006276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.403321 B = 4216.160684 C = 4460.327350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.112 3.888 3 H 0.039 0.961 4 C -0.495 4.495 5 H 0.052 0.948 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.893 3.107 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.059 3.941 13 C -0.078 4.078 14 N -0.458 5.458 15 C 0.113 3.887 16 C -0.146 4.146 17 C -0.138 4.138 18 C -0.148 4.148 19 C 0.158 3.842 20 N -0.491 5.491 21 H 0.086 0.914 22 H 0.008 0.992 23 H 0.025 0.975 24 H 0.260 0.740 25 H 0.164 0.836 26 H 0.116 0.884 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.098 -9.559 14.621 17.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.093 3.907 3 H 0.057 0.943 4 C -0.534 4.534 5 H 0.070 0.930 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.721 3.279 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.204 1.204 12 C -0.070 4.070 13 C -0.207 4.207 14 N -0.144 5.144 15 C 0.009 3.991 16 C -0.184 4.184 17 C -0.176 4.176 18 C -0.186 4.186 19 C -0.123 4.123 20 N -0.210 5.210 21 H 0.104 0.896 22 H 0.027 0.973 23 H 0.044 0.956 24 H 0.070 0.930 25 H 0.182 0.818 26 H 0.134 0.866 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 1.518 -8.896 14.368 16.967 hybrid contribution -0.188 -1.272 -0.637 1.435 sum 1.330 -10.168 13.731 17.137 Atomic orbital electron populations 1.21771 0.97920 0.98874 1.00230 1.17197 0.91845 0.95338 0.86334 0.94291 1.21009 1.30511 1.11966 0.89903 0.93012 1.24926 0.95309 0.95092 0.98737 1.69881 1.37138 1.22981 1.23267 0.86649 0.79246 0.79614 0.82411 1.20467 1.21323 1.20374 1.21624 0.91635 0.95791 0.97908 1.22413 1.01314 1.03807 0.93132 1.45362 1.21474 1.24853 1.22703 1.22908 1.00196 0.87578 0.88441 1.23414 1.01902 0.98023 0.95057 1.22740 1.01582 0.96949 0.96353 1.23419 0.99099 0.99594 0.96502 1.24587 0.94987 0.91327 1.01411 1.70250 1.19640 1.25652 1.05476 0.89578 0.97324 0.95599 0.93050 0.81833 0.86647 0.89115 0.90546 0.89738 0.90586 0.90612 0.89172 0.79483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 8.55 37.16 0.32 -2.94 16 2 C 0.11 3.07 2.75 -92.92 -0.26 2.81 16 3 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 4 C -0.50 -14.45 8.55 -34.44 -0.29 -14.74 16 5 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -26.34 11.32 55.43 0.63 -25.71 16 8 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 12 C 0.06 1.43 5.96 -82.85 -0.49 0.93 16 13 C -0.08 -1.59 10.72 -16.56 -0.18 -1.77 16 14 N -0.46 -7.68 2.94 -110.59 -0.33 -8.00 16 15 C 0.11 1.32 4.63 -67.12 -0.31 1.01 16 16 C -0.15 -1.33 7.66 -25.83 -0.20 -1.53 16 17 C -0.14 -1.04 8.09 -25.83 -0.21 -1.24 16 18 C -0.15 -1.46 7.76 -25.92 -0.20 -1.66 16 19 C 0.16 2.86 11.31 -90.38 -1.02 1.83 16 20 N -0.49 -11.49 11.25 -10.87 -0.12 -11.61 16 21 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 22 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 23 H 0.02 0.60 7.27 -51.93 -0.38 0.22 16 24 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 25 H 0.16 3.09 7.37 -52.49 -0.39 2.71 16 26 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.09 0.85 7.00 -51.93 -0.36 0.49 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.97 7.86 -51.93 -0.41 0.56 16 33 H 0.19 2.58 7.51 -52.49 -0.39 2.19 16 LS Contribution 273.79 15.07 4.13 4.13 Total: -1.00 -32.57 273.79 -8.40 -40.97 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -4.75 Total: -1.24 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -2.94 Total: -15.66 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.18 Total: -45.32 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.57 -8.40 -40.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261215473.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.694 kcal (2) G-P(sol) polarization free energy of solvation -32.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds