Wall clock time and date at job start Mon Mar 30 2020 03:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00425 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00108 * 8 6 4 12 12 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 13 13 C 1.34671 * 125.98911 * 34.71358 * 12 2 1 14 14 N 1.36883 * 106.81522 * 179.85312 * 13 12 2 15 15 C 1.46497 * 126.39428 * 180.19240 * 14 13 12 16 16 C 1.53786 * 113.61228 * 219.41879 * 15 14 13 17 17 C 1.53949 * 87.02030 * 220.04936 * 16 15 14 18 18 C 1.53780 * 113.61392 * 121.81585 * 15 14 13 19 19 C 1.35044 * 107.20412 * 0.41128 * 14 13 12 20 20 N 1.30494 * 108.70365 * 359.74176 * 19 14 13 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 25 25 H 1.07995 * 126.59081 * 359.95992 * 13 12 2 26 26 H 1.09000 * 112.85190 * 350.61663 * 15 14 13 27 27 H 1.08998 * 113.61395 * 334.57261 * 16 15 14 28 28 H 1.09001 * 113.61051 * 105.46844 * 16 15 14 29 29 H 1.09006 * 113.53705 * 270.81131 * 17 16 15 30 30 H 1.08997 * 113.67073 * 139.93490 * 17 16 15 31 31 H 1.09004 * 113.61412 * 254.52348 * 18 15 14 32 32 H 1.08999 * 113.61707 * 25.34854 * 18 15 14 33 33 H 1.08000 * 125.64381 * 179.72455 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 6 2.0324 -0.7105 1.2305 13 6 1.4517 -1.7702 1.8249 14 7 2.2329 -2.0985 2.8999 15 6 1.9965 -3.1933 3.8442 16 6 2.3178 -2.8286 5.3032 17 6 2.9169 -4.2401 5.4398 18 6 3.1553 -4.2014 3.9211 19 6 3.2594 -1.2216 2.9303 20 7 3.1330 -0.3945 1.9289 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.7089 1.1613 -3.4844 25 1 0.5450 -2.2668 1.5124 26 1 1.0198 -3.6597 3.7156 27 1 3.0536 -2.0305 5.4019 28 1 1.4323 -2.6676 5.9181 29 1 2.1916 -4.9928 5.7489 30 1 3.8358 -4.2707 6.0253 31 1 2.9449 -5.1473 3.4219 32 1 4.1203 -3.7798 3.6399 33 1 4.0534 -1.2071 3.6623 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261215473.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:45 Heat of formation + Delta-G solvation = 56.012709 kcal Electronic energy + Delta-G solvation = -14686.558583 eV Core-core repulsion = 12327.071367 eV Total energy + Delta-G solvation = -2359.487216 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.91730 -39.41938 -36.27435 -33.48627 -32.56050 -29.05875 -27.22125 -26.64330 -26.14890 -23.73124 -22.28120 -20.85152 -19.67427 -18.46404 -18.18959 -16.64432 -16.24882 -15.94538 -15.20864 -14.90651 -14.72314 -14.38342 -13.89880 -13.52565 -13.37030 -13.22264 -12.80893 -12.70209 -12.28334 -12.18383 -12.05258 -11.62230 -11.56075 -11.44878 -11.08224 -10.68499 -10.39186 -10.18449 -9.02924 -8.05541 -6.20178 1.29632 1.41089 1.43826 1.51688 2.07200 2.36394 2.55867 3.19402 3.47187 3.60647 3.80789 3.89196 3.90361 4.12594 4.47044 4.68230 4.72961 4.73756 4.87687 4.96117 4.99525 5.07319 5.07919 5.12180 5.28557 5.35921 5.57156 5.59973 5.87700 5.98797 6.19396 6.39325 6.59458 6.85856 7.44041 7.47234 8.98515 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.046163 B = 0.006640 C = 0.006276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.403321 B = 4216.160684 C = 4460.327350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.113 3.887 3 H -0.011 1.011 4 C -0.516 4.516 5 H 0.039 0.961 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.959 3.041 9 H -0.268 1.268 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.013 3.987 13 C -0.067 4.067 14 N -0.446 5.446 15 C 0.092 3.908 16 C -0.141 4.141 17 C -0.119 4.119 18 C -0.148 4.148 19 C 0.175 3.825 20 N -0.547 5.547 21 H 0.060 0.940 22 H 0.022 0.978 23 H 0.039 0.961 24 H 0.263 0.737 25 H 0.178 0.822 26 H 0.129 0.871 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.313 -11.846 16.185 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.093 3.907 3 H 0.007 0.993 4 C -0.555 4.555 5 H 0.057 0.943 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.784 3.216 9 H -0.193 1.193 10 H -0.203 1.203 11 H -0.204 1.204 12 C -0.115 4.115 13 C -0.199 4.199 14 N -0.129 5.129 15 C -0.010 4.010 16 C -0.179 4.179 17 C -0.157 4.157 18 C -0.187 4.187 19 C -0.107 4.107 20 N -0.267 5.267 21 H 0.079 0.921 22 H 0.041 0.959 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.195 0.805 26 H 0.147 0.853 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 1.723 -11.213 15.967 19.587 hybrid contribution -0.225 -0.578 -1.018 1.192 sum 1.499 -11.790 14.949 19.098 Atomic orbital electron populations 1.21553 0.96615 0.99452 0.99611 1.16988 0.92945 0.92830 0.87927 0.99261 1.21212 1.30911 1.11974 0.91369 0.94267 1.25730 0.95322 0.95782 1.01693 1.70014 1.37677 1.23973 1.24092 0.85614 0.78436 0.78934 0.78655 1.19265 1.20263 1.20410 1.21234 0.93690 0.98112 0.98481 1.22426 1.01498 1.02445 0.93533 1.45604 1.19967 1.25280 1.22079 1.23575 1.01873 0.86807 0.88779 1.23432 1.02488 0.99159 0.92810 1.22702 1.02505 0.96065 0.94408 1.23436 0.97645 0.98948 0.98647 1.25233 0.95411 0.89772 1.00242 1.70110 1.20410 1.28487 1.07704 0.92080 0.95854 0.94224 0.92810 0.80536 0.85332 0.89248 0.89436 0.87991 0.89134 0.90164 0.90096 0.75325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.88 8.55 71.98 0.62 -5.27 16 2 C 0.11 6.44 2.75 -12.29 -0.03 6.40 16 3 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 4 C -0.52 -31.10 8.55 25.60 0.22 -30.88 16 5 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -55.52 11.32 21.45 0.24 -55.28 16 8 Si 0.96 45.88 29.54 68.60 2.03 47.91 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 12 C 0.01 0.63 5.96 41.39 0.25 0.87 16 13 C -0.07 -2.73 10.72 83.09 0.89 -1.84 16 14 N -0.45 -14.15 2.94 -503.81 -1.48 -15.63 16 15 C 0.09 1.86 4.63 45.52 0.21 2.07 16 16 C -0.14 -2.03 7.66 31.18 0.24 -1.80 16 17 C -0.12 -1.26 8.09 31.18 0.25 -1.01 16 18 C -0.15 -2.44 7.76 31.12 0.24 -2.20 16 19 C 0.18 6.12 11.31 180.26 2.04 8.16 16 20 N -0.55 -26.02 11.25 -188.31 -2.12 -28.14 16 21 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 22 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.04 1.87 7.27 -2.38 -0.02 1.85 16 24 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 25 H 0.18 6.49 7.37 -2.91 -0.02 6.47 16 26 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.09 1.35 7.00 -2.39 -0.02 1.33 16 28 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.08 1.51 7.86 -2.39 -0.02 1.49 16 33 H 0.23 5.67 7.51 -2.91 -0.02 5.64 16 Total: -1.00 -73.46 273.79 5.12 -68.35 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 1.08 Total: 7.07 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: 5.37 Total: -24.28 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -3.36 Total: -99.05 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -73.46 5.12 -68.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261215473.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.360 kcal (2) G-P(sol) polarization free energy of solvation -73.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds