Wall clock time and date at job start Mon Mar 30 2020 03:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46782 * 2 1 4 4 C 1.50697 * 109.46876 * 120.00207 * 2 1 3 5 5 H 1.08000 * 119.99576 * 114.35130 * 4 2 1 6 6 C 1.37874 * 120.00076 * 294.34255 * 4 2 1 7 7 N 1.31519 * 119.99759 * 156.84384 * 6 4 2 8 8 Si 1.86800 * 120.00222 * 336.84896 * 6 4 2 9 9 H 1.48502 * 109.46936 * 179.97438 * 8 6 4 10 10 H 1.48500 * 109.46783 * 299.99819 * 8 6 4 11 11 H 1.48494 * 109.47256 * 59.99528 * 8 6 4 12 12 C 1.50700 * 109.47173 * 240.00614 * 2 1 3 13 13 C 1.34668 * 125.98729 * 324.99435 * 12 2 1 14 14 N 1.36886 * 106.81789 * 179.97438 * 13 12 2 15 15 C 1.46495 * 126.40040 * 180.02562 * 14 13 12 16 16 C 1.53783 * 113.61378 * 219.13851 * 15 14 13 17 17 C 1.53954 * 87.01803 * 220.04578 * 16 15 14 18 18 C 1.53776 * 113.61768 * 121.53036 * 15 14 13 19 19 C 1.35048 * 107.20140 * 0.02562 * 14 13 12 20 20 N 1.30496 * 108.70106 * 359.76001 * 19 14 13 21 21 H 1.08994 * 109.47265 * 293.42532 * 1 2 3 22 22 H 1.09002 * 109.47128 * 53.43283 * 1 2 3 23 23 H 1.09001 * 109.47164 * 173.42560 * 1 2 3 24 24 H 0.96999 * 119.99964 * 354.92817 * 7 6 4 25 25 H 1.08001 * 126.59709 * 359.95191 * 13 12 2 26 26 H 1.09003 * 112.84760 * 350.33492 * 15 14 13 27 27 H 1.08996 * 113.61505 * 334.56646 * 16 15 14 28 28 H 1.09004 * 113.61064 * 105.46805 * 16 15 14 29 29 H 1.09006 * 113.53667 * 270.80945 * 17 16 15 30 30 H 1.09001 * 113.66142 * 139.93677 * 17 16 15 31 31 H 1.08995 * 113.61673 * 254.53536 * 18 15 14 32 32 H 1.09006 * 113.61046 * 25.35162 * 18 15 14 33 33 H 1.07999 * 125.64433 * 180.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5759 -1.6387 1.1339 6 6 1.7980 -0.1754 2.4793 7 7 1.8073 -0.9528 3.5401 8 14 1.4673 1.6537 2.6648 9 1 1.2475 1.9741 4.0981 10 1 2.6334 2.4213 2.1586 11 1 0.2577 2.0196 1.8851 12 6 2.0324 -0.7103 -1.2305 13 6 1.4547 -1.7733 -1.8219 14 7 2.2324 -2.0977 -2.9006 15 6 1.9952 -3.1913 -3.8460 16 6 3.2785 -3.9176 -4.2824 17 6 2.6746 -3.9647 -5.6978 18 6 1.8539 -2.7251 -5.3045 19 6 3.2594 -1.2212 -2.9305 20 7 3.1306 -0.3915 -1.9315 21 1 -0.3633 0.4085 0.9429 22 1 -0.3633 0.6123 -0.8254 23 1 -0.3633 -1.0209 -0.1177 24 1 1.9056 -1.9124 3.4373 25 1 0.5515 -2.2741 -1.5057 26 1 1.2005 -3.8643 -3.5239 27 1 4.1748 -3.3016 -4.2104 28 1 3.4009 -4.8999 -3.8260 29 1 2.0665 -4.8503 -5.8824 30 1 3.3997 -3.7753 -6.4893 31 1 0.8281 -2.7458 -5.6722 32 1 2.3590 -1.7816 -5.5121 33 1 4.0532 -1.2065 -3.6626 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261215474.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:48 Heat of formation + Delta-G solvation = 74.393073 kcal Electronic energy + Delta-G solvation = -14714.806503 eV Core-core repulsion = 12356.116320 eV Total energy + Delta-G solvation = -2358.690183 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.57551 -38.57636 -34.37327 -31.98157 -31.08860 -27.72682 -25.97270 -25.31616 -24.54832 -21.78047 -21.19843 -19.48594 -18.27914 -17.35545 -17.16344 -15.61324 -14.69481 -13.96208 -13.88599 -13.68814 -13.21954 -12.87172 -12.81056 -12.61429 -12.22499 -11.77571 -11.46416 -10.99981 -10.79936 -10.77395 -10.63728 -10.33468 -9.85030 -9.68668 -9.10141 -8.97374 -8.76036 -8.08033 -7.53594 -6.30519 -3.89403 2.66089 3.23823 3.51860 3.58316 3.75165 4.02081 4.18440 4.30710 4.52467 4.58753 4.64148 5.08789 5.17555 5.32496 5.38039 5.41520 5.50418 5.56895 5.63514 5.69659 6.01592 6.16936 6.47197 6.55946 6.73370 6.87866 6.92284 7.28262 7.47556 7.71947 7.87851 8.30094 8.52557 8.90472 9.05568 9.73896 11.03990 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.057747 B = 0.006543 C = 0.006421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.760990 B = 4278.431987 C = 4359.539969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.087 3.913 3 H 0.033 0.967 4 C -0.587 4.587 5 H 0.053 0.947 6 C 0.036 3.964 7 N -0.904 5.904 8 Si 1.038 2.962 9 H -0.287 1.287 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.064 3.936 13 C -0.076 4.076 14 N -0.457 5.457 15 C 0.112 3.888 16 C -0.146 4.146 17 C -0.138 4.138 18 C -0.147 4.147 19 C 0.161 3.839 20 N -0.491 5.491 21 H 0.053 0.947 22 H 0.022 0.978 23 H 0.041 0.959 24 H 0.267 0.733 25 H 0.165 0.835 26 H 0.116 0.884 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.947 -5.301 -17.918 18.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.067 3.933 3 H 0.050 0.950 4 C -0.625 4.625 5 H 0.072 0.928 6 C -0.169 4.169 7 N -0.538 5.538 8 Si 0.866 3.134 9 H -0.213 1.213 10 H -0.209 1.209 11 H -0.203 1.203 12 C -0.064 4.064 13 C -0.205 4.205 14 N -0.142 5.142 15 C 0.008 3.992 16 C -0.185 4.185 17 C -0.176 4.176 18 C -0.185 4.185 19 C -0.120 4.120 20 N -0.210 5.210 21 H 0.072 0.928 22 H 0.041 0.959 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.182 0.818 26 H 0.134 0.866 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -0.707 -3.574 -16.678 17.072 hybrid contribution -0.181 -2.103 -1.357 2.509 sum -0.888 -5.677 -18.036 18.929 Atomic orbital electron populations 1.22133 0.98381 0.99593 0.99457 1.17483 0.91290 0.95371 0.89136 0.94955 1.21804 1.39981 1.10213 0.90460 0.92848 1.25703 0.93523 1.05683 0.92002 1.70857 1.44954 1.06154 1.31845 0.84137 0.77342 0.76279 0.75686 1.21338 1.20860 1.20313 1.21163 0.92006 0.96011 0.97261 1.22370 1.01523 1.03727 0.92911 1.45359 1.21473 1.24952 1.22456 1.22936 0.99628 0.88552 0.88076 1.23419 0.97348 1.01418 0.96273 1.22739 0.99687 0.98291 0.96869 1.23414 1.01521 0.99055 0.94523 1.24596 0.94890 0.91151 1.01333 1.70217 1.19383 1.25870 1.05552 0.92815 0.95850 0.93979 0.92359 0.81810 0.86600 0.89080 0.90443 0.89684 0.90523 0.90618 0.89198 0.79306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.64 37.16 0.32 -2.83 16 2 C 0.09 2.27 2.35 -92.92 -0.22 2.05 16 3 H 0.03 0.87 6.72 -51.93 -0.35 0.52 16 4 C -0.59 -17.42 8.75 -34.44 -0.30 -17.72 16 5 H 0.05 1.74 7.99 -52.49 -0.42 1.32 16 6 C 0.04 1.06 5.20 -17.82 -0.09 0.97 16 7 N -0.90 -28.47 13.70 55.43 0.76 -27.71 16 8 Si 1.04 26.23 26.45 -169.99 -4.50 21.73 16 9 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.46 6.14 56.52 0.35 -6.11 16 12 C 0.06 1.52 5.96 -82.85 -0.49 1.03 16 13 C -0.08 -1.53 10.70 -16.56 -0.18 -1.71 16 14 N -0.46 -7.54 2.94 -110.59 -0.33 -7.87 16 15 C 0.11 1.29 4.63 -67.12 -0.31 0.98 16 16 C -0.15 -1.37 7.66 -25.83 -0.20 -1.57 16 17 C -0.14 -1.00 8.09 -25.83 -0.21 -1.21 16 18 C -0.15 -1.33 7.76 -25.92 -0.20 -1.53 16 19 C 0.16 2.87 11.31 -90.37 -1.02 1.85 16 20 N -0.49 -11.29 11.25 -10.87 -0.12 -11.41 16 21 H 0.05 1.26 5.47 -51.93 -0.28 0.98 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.04 0.90 6.95 -51.93 -0.36 0.54 16 24 H 0.27 8.37 8.73 -40.82 -0.36 8.01 16 25 H 0.16 3.04 7.21 -52.49 -0.38 2.66 16 26 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.09 0.89 7.00 -51.93 -0.36 0.52 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.87 7.86 -51.93 -0.41 0.46 16 33 H 0.19 2.55 7.52 -52.49 -0.39 2.15 16 LS Contribution 270.04 15.07 4.07 4.07 Total: -1.00 -34.01 270.04 -7.72 -41.73 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -4.70 Total: -0.85 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -2.90 Total: -19.70 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.31 Total: -46.99 kcal Atomic # 14 Polarization: 26.23 SS G_CDS: -4.50 Total: 21.73 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -34.01 -7.72 -41.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261215474.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.127 kcal (2) G-P(sol) polarization free energy of solvation -34.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds