Wall clock time and date at job start Mon Mar 30 2020 03:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46782 * 2 1 4 4 C 1.50697 * 109.46876 * 120.00207 * 2 1 3 5 5 H 1.08000 * 119.99576 * 114.35130 * 4 2 1 6 6 C 1.37874 * 120.00076 * 294.34255 * 4 2 1 7 7 N 1.31519 * 119.99759 * 156.84384 * 6 4 2 8 8 Si 1.86800 * 120.00222 * 336.84896 * 6 4 2 9 9 H 1.48502 * 109.46936 * 179.97438 * 8 6 4 10 10 H 1.48500 * 109.46783 * 299.99819 * 8 6 4 11 11 H 1.48494 * 109.47256 * 59.99528 * 8 6 4 12 12 C 1.50700 * 109.47173 * 240.00614 * 2 1 3 13 13 C 1.34668 * 125.98729 * 324.99435 * 12 2 1 14 14 N 1.36886 * 106.81789 * 179.97438 * 13 12 2 15 15 C 1.46495 * 126.40040 * 180.02562 * 14 13 12 16 16 C 1.53783 * 113.61378 * 219.13851 * 15 14 13 17 17 C 1.53954 * 87.01803 * 220.04578 * 16 15 14 18 18 C 1.53776 * 113.61768 * 121.53036 * 15 14 13 19 19 C 1.35048 * 107.20140 * 0.02562 * 14 13 12 20 20 N 1.30496 * 108.70106 * 359.76001 * 19 14 13 21 21 H 1.08994 * 109.47265 * 293.42532 * 1 2 3 22 22 H 1.09002 * 109.47128 * 53.43283 * 1 2 3 23 23 H 1.09001 * 109.47164 * 173.42560 * 1 2 3 24 24 H 0.96999 * 119.99964 * 354.92817 * 7 6 4 25 25 H 1.08001 * 126.59709 * 359.95191 * 13 12 2 26 26 H 1.09003 * 112.84760 * 350.33492 * 15 14 13 27 27 H 1.08996 * 113.61505 * 334.56646 * 16 15 14 28 28 H 1.09004 * 113.61064 * 105.46805 * 16 15 14 29 29 H 1.09006 * 113.53667 * 270.80945 * 17 16 15 30 30 H 1.09001 * 113.66142 * 139.93677 * 17 16 15 31 31 H 1.08995 * 113.61673 * 254.53536 * 18 15 14 32 32 H 1.09006 * 113.61046 * 25.35162 * 18 15 14 33 33 H 1.07999 * 125.64433 * 180.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5759 -1.6387 1.1339 6 6 1.7980 -0.1754 2.4793 7 7 1.8073 -0.9528 3.5401 8 14 1.4673 1.6537 2.6648 9 1 1.2475 1.9741 4.0981 10 1 2.6334 2.4213 2.1586 11 1 0.2577 2.0196 1.8851 12 6 2.0324 -0.7103 -1.2305 13 6 1.4547 -1.7733 -1.8219 14 7 2.2324 -2.0977 -2.9006 15 6 1.9952 -3.1913 -3.8460 16 6 3.2785 -3.9176 -4.2824 17 6 2.6746 -3.9647 -5.6978 18 6 1.8539 -2.7251 -5.3045 19 6 3.2594 -1.2212 -2.9305 20 7 3.1306 -0.3915 -1.9315 21 1 -0.3633 0.4085 0.9429 22 1 -0.3633 0.6123 -0.8254 23 1 -0.3633 -1.0209 -0.1177 24 1 1.9056 -1.9124 3.4373 25 1 0.5515 -2.2741 -1.5057 26 1 1.2005 -3.8643 -3.5239 27 1 4.1748 -3.3016 -4.2104 28 1 3.4009 -4.8999 -3.8260 29 1 2.0665 -4.8503 -5.8824 30 1 3.3997 -3.7753 -6.4893 31 1 0.8281 -2.7458 -5.6722 32 1 2.3590 -1.7816 -5.5121 33 1 4.0532 -1.2065 -3.6626 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261215474.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:48 Heat of formation + Delta-G solvation = 53.208443 kcal Electronic energy + Delta-G solvation = -14715.725138 eV Core-core repulsion = 12356.116320 eV Total energy + Delta-G solvation = -2359.608818 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.99638 -39.47628 -36.36366 -33.75498 -32.87502 -29.31708 -26.85494 -26.68862 -26.13681 -23.60432 -22.35734 -20.88738 -19.74200 -19.38416 -18.43859 -16.44292 -16.10408 -15.85614 -15.31059 -15.13840 -14.93203 -14.46597 -14.01547 -13.77393 -13.54522 -13.29772 -12.91247 -12.65529 -12.32544 -12.13207 -11.71527 -11.64164 -11.59133 -11.48974 -11.07577 -10.72553 -10.41458 -10.23522 -9.23026 -8.62523 -6.28539 1.22583 1.48634 1.56387 1.77377 2.00501 2.36932 2.52224 3.04749 3.42184 3.55824 3.74300 3.81816 3.84962 4.03940 4.40360 4.50516 4.67979 4.69307 4.70715 4.81452 4.93618 4.95168 4.98792 5.04561 5.05416 5.28670 5.36989 5.50517 5.67241 5.95044 6.05235 6.18178 6.50575 6.61182 7.35047 7.43306 8.63974 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.057747 B = 0.006543 C = 0.006421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.760990 B = 4278.431987 C = 4359.539969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.086 3.914 3 H 0.019 0.981 4 C -0.589 4.589 5 H 0.006 0.994 6 C -0.012 4.012 7 N -0.932 5.932 8 Si 1.079 2.921 9 H -0.284 1.284 10 H -0.276 1.276 11 H -0.243 1.243 12 C 0.016 3.984 13 C -0.071 4.071 14 N -0.446 5.446 15 C 0.090 3.910 16 C -0.147 4.147 17 C -0.119 4.119 18 C -0.141 4.141 19 C 0.177 3.823 20 N -0.544 5.544 21 H 0.044 0.956 22 H 0.050 0.950 23 H 0.048 0.952 24 H 0.252 0.748 25 H 0.176 0.824 26 H 0.126 0.874 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.562 -5.288 -20.641 21.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.065 3.935 3 H 0.037 0.963 4 C -0.627 4.627 5 H 0.025 0.975 6 C -0.210 4.210 7 N -0.567 5.567 8 Si 0.900 3.100 9 H -0.210 1.210 10 H -0.202 1.202 11 H -0.167 1.167 12 C -0.112 4.112 13 C -0.202 4.202 14 N -0.129 5.129 15 C -0.012 4.012 16 C -0.185 4.185 17 C -0.157 4.157 18 C -0.179 4.179 19 C -0.105 4.105 20 N -0.264 5.264 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.193 0.807 26 H 0.144 0.856 27 H 0.107 0.893 28 H 0.099 0.901 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -1.333 -3.605 -19.451 19.827 hybrid contribution 0.096 -2.256 -0.619 2.341 sum -1.237 -5.861 -20.070 20.945 Atomic orbital electron populations 1.21972 0.95998 1.00625 1.00065 1.17371 0.93136 0.94242 0.88713 0.96302 1.21910 1.39320 1.08646 0.92841 0.97541 1.27108 0.92870 1.09399 0.91649 1.70978 1.47539 1.05472 1.32755 0.83611 0.78928 0.71070 0.76356 1.20979 1.20161 1.16653 1.20981 0.93909 0.98242 0.98064 1.22437 1.01824 1.02528 0.93448 1.45611 1.20047 1.25374 1.21852 1.23587 1.01567 0.87814 0.88241 1.23467 0.96165 1.01126 0.97751 1.22702 0.99385 0.97850 0.95717 1.23400 1.02569 0.99755 0.92154 1.25257 0.95287 0.89683 1.00291 1.70093 1.20034 1.28619 1.07648 0.93673 0.93060 0.93319 0.93947 0.80731 0.85641 0.89332 0.90129 0.88077 0.88953 0.89637 0.89604 0.75209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.76 8.64 71.98 0.62 -5.14 16 2 C 0.09 4.48 2.35 -12.29 -0.03 4.45 16 3 H 0.02 1.03 6.72 -2.39 -0.02 1.01 16 4 C -0.59 -36.23 8.75 25.60 0.22 -36.01 16 5 H 0.01 0.43 7.99 -2.91 -0.02 0.41 16 6 C -0.01 -0.72 5.20 84.65 0.44 -0.28 16 7 N -0.93 -60.51 13.70 21.45 0.29 -60.21 16 8 Si 1.08 52.99 26.45 68.60 1.81 54.81 16 9 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.24 -10.52 6.14 99.48 0.61 -9.91 16 12 C 0.02 0.77 5.96 41.39 0.25 1.02 16 13 C -0.07 -2.80 10.70 83.09 0.89 -1.91 16 14 N -0.45 -13.96 2.94 -503.81 -1.48 -15.44 16 15 C 0.09 1.82 4.63 45.52 0.21 2.03 16 16 C -0.15 -2.30 7.66 31.18 0.24 -2.06 16 17 C -0.12 -1.23 8.09 31.18 0.25 -0.97 16 18 C -0.14 -2.05 7.76 31.12 0.24 -1.81 16 19 C 0.18 6.03 11.31 180.26 2.04 8.07 16 20 N -0.54 -25.01 11.25 -188.32 -2.12 -27.13 16 21 H 0.04 2.06 5.47 -2.39 -0.01 2.04 16 22 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.05 2.06 6.95 -2.39 -0.02 2.04 16 24 H 0.25 16.58 8.73 -92.71 -0.81 15.77 16 25 H 0.18 6.35 7.21 -2.91 -0.02 6.33 16 26 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.09 1.45 7.00 -2.39 -0.02 1.43 16 28 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 1.36 7.86 -2.38 -0.02 1.35 16 33 H 0.23 5.52 7.52 -2.91 -0.02 5.50 16 Total: -1.00 -76.90 270.04 4.83 -72.07 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.95 Total: 8.54 kcal Atomic # 6 Polarization: -38.00 SS G_CDS: 5.38 Total: -32.63 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -3.31 Total: -102.78 kcal Atomic # 14 Polarization: 52.99 SS G_CDS: 1.81 Total: 54.81 kcal Total: -76.90 4.83 -72.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261215474.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.277 kcal (2) G-P(sol) polarization free energy of solvation -76.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds