Wall clock time and date at job start Mon Mar 30 2020 02:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46949 * 2 1 4 4 N 1.46505 * 109.47299 * 119.99831 * 2 1 3 5 5 C 1.34885 * 126.03156 * 275.00720 * 4 2 1 6 6 C 1.35459 * 107.77210 * 179.97438 * 5 4 2 7 7 C 1.39849 * 107.91489 * 0.02562 * 6 5 4 8 8 N 1.31047 * 108.12861 * 359.97438 * 7 6 5 9 9 C 1.51323 * 109.51481 * 179.97438 * 7 6 5 10 10 H 1.09002 * 110.37226 * 136.20300 * 9 7 6 11 11 C 1.50695 * 110.29483 * 258.29359 * 9 7 6 12 12 H 1.07995 * 120.00496 * 115.79618 * 11 9 7 13 13 C 1.37880 * 119.99572 * 295.79552 * 11 9 7 14 14 N 1.31511 * 120.00327 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 119.99951 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47297 * 59.99744 * 15 13 11 17 17 H 1.48503 * 109.47261 * 299.99924 * 15 13 11 18 18 H 1.48500 * 109.47454 * 179.97438 * 15 13 11 19 19 C 1.54343 * 105.21778 * 17.22903 * 9 7 6 20 20 C 1.51285 * 142.52979 * 179.97438 * 6 5 4 21 21 H 1.08996 * 109.46729 * 60.00164 * 1 2 3 22 22 H 1.08996 * 109.46905 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47163 * 300.00065 * 1 2 3 24 24 H 1.09004 * 109.47376 * 239.99981 * 2 1 3 25 25 H 1.09006 * 109.47106 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.47271 * 299.99504 * 3 2 1 27 27 H 1.08995 * 109.47241 * 59.99983 * 3 2 1 28 28 H 1.08004 * 126.11122 * 359.93190 * 5 4 2 29 29 H 0.97006 * 119.99995 * 359.97438 * 14 13 11 30 30 H 1.09001 * 110.77235 * 91.75978 * 19 9 7 31 31 H 1.08999 * 110.76628 * 214.97511 * 19 9 7 32 32 H 1.09003 * 110.29172 * 43.87265 * 20 6 5 33 33 H 1.08991 * 110.38087 * 281.78101 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1932 -0.1394 2.4148 6 6 2.6564 -1.1059 3.2432 7 6 2.7689 -2.2880 2.5045 8 7 2.3859 -2.0393 1.2762 9 6 3.2856 -3.3949 3.3976 10 1 2.7247 -4.3137 3.2264 11 6 4.7538 -3.6255 3.1479 12 1 5.4713 -3.4356 3.9323 13 6 5.1809 -4.0791 1.9179 14 7 4.3071 -4.3100 0.9625 15 14 7.0006 -4.3657 1.6085 16 1 7.5109 -5.3826 2.5629 17 1 7.7415 -3.0928 1.7986 18 1 7.1962 -4.8500 0.2184 19 6 3.0605 -2.8910 4.8390 20 6 3.0917 -1.3571 4.6701 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 3.1301 1.4426 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.9991 0.8889 2.6821 29 1 3.3621 -4.1615 1.1232 30 1 2.0918 -3.2188 5.2162 31 1 3.8630 -3.2268 5.4956 32 1 2.3973 -0.8858 5.3657 33 1 4.1014 -0.9796 4.8310 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261215664.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:50 Heat of formation + Delta-G solvation = 70.289214 kcal Electronic energy + Delta-G solvation = -15186.118731 eV Core-core repulsion = 12827.250591 eV Total energy + Delta-G solvation = -2358.868140 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.55532 -36.56511 -34.16331 -32.35308 -29.37370 -27.95159 -27.27971 -26.27012 -23.38494 -22.63033 -19.77404 -19.13394 -18.61883 -16.63930 -15.83742 -14.78957 -14.35469 -13.92085 -13.68265 -13.62049 -12.76978 -12.38151 -12.37882 -12.10024 -12.03384 -11.55251 -11.22949 -11.13371 -10.90341 -10.76216 -10.49257 -10.27804 -10.04485 -9.58449 -9.18284 -8.83639 -8.24176 -7.94186 -7.27034 -6.21067 -3.96371 2.81347 3.23295 3.48921 3.52001 3.70111 3.98283 4.63634 4.72646 5.04495 5.19213 5.22151 5.42882 5.49392 5.55001 5.69700 5.75230 5.87069 6.02220 6.05519 6.06834 6.22321 6.26435 6.45331 6.63378 6.86621 6.93097 7.06681 7.23191 7.48270 7.77733 7.99508 8.27047 8.55614 8.91418 9.04695 9.78317 11.20411 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.028009 B = 0.010272 C = 0.008558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.446354 B = 2725.265829 C = 3271.178041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.161 3.839 3 C -0.161 4.161 4 N -0.387 5.387 5 C 0.044 3.956 6 C -0.271 4.271 7 C 0.098 3.902 8 N -0.279 5.279 9 C 0.108 3.892 10 H 0.027 0.973 11 C -0.594 4.594 12 H 0.054 0.946 13 C 0.021 3.979 14 N -0.889 5.889 15 Si 1.066 2.934 16 H -0.287 1.287 17 H -0.291 1.291 18 H -0.284 1.284 19 C -0.105 4.105 20 C -0.023 4.023 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.057 0.943 24 H 0.096 0.904 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.153 0.847 29 H 0.285 0.715 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.576 10.079 1.168 11.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.059 3.941 3 C -0.219 4.219 4 N -0.170 5.170 5 C -0.100 4.100 6 C -0.283 4.283 7 C -0.071 4.071 8 N -0.098 5.098 9 C 0.088 3.912 10 H 0.044 0.956 11 C -0.633 4.633 12 H 0.073 0.927 13 C -0.187 4.187 14 N -0.523 5.523 15 Si 0.895 3.105 16 H -0.214 1.214 17 H -0.217 1.217 18 H -0.209 1.209 19 C -0.144 4.144 20 C -0.061 4.061 21 H 0.087 0.913 22 H 0.082 0.918 23 H 0.076 0.924 24 H 0.114 0.886 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.170 0.830 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.756 9.196 -1.327 10.437 hybrid contribution -0.929 1.191 1.769 2.326 sum -5.685 10.386 0.442 11.849 Atomic orbital electron populations 1.22215 0.94625 1.02994 1.02077 1.20962 0.94009 0.92236 0.86925 1.22156 1.02331 0.94695 1.02711 1.48938 1.52818 1.08081 1.07142 1.21121 1.04465 0.98011 0.86379 1.20989 1.13388 0.94966 0.98956 1.24383 0.92925 0.99458 0.90339 1.77319 1.22441 0.91047 1.18976 1.18039 0.96693 0.89637 0.86855 0.95554 1.21776 0.90448 1.49785 1.01257 0.92740 1.25774 1.06352 0.94027 0.92591 1.70620 1.05067 1.42140 1.34446 0.83602 0.74525 0.76305 0.76103 1.21368 1.21734 1.20904 1.22282 0.99700 0.94187 0.98186 1.20173 0.99262 0.96461 0.90241 0.91267 0.91752 0.92369 0.88557 0.91649 0.90729 0.91940 0.82966 0.90221 0.93348 0.91088 0.93377 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.52 37.16 0.35 -1.73 16 2 C 0.16 2.52 3.93 -67.93 -0.27 2.25 16 3 C -0.16 -1.94 8.83 37.16 0.33 -1.61 16 4 N -0.39 -8.06 3.52 -54.83 -0.19 -8.25 16 5 C 0.04 0.87 10.59 -17.20 -0.18 0.69 16 6 C -0.27 -6.13 6.87 -104.72 -0.72 -6.85 16 7 C 0.10 2.57 6.21 -82.02 -0.51 2.06 16 8 N -0.28 -7.30 11.51 33.86 0.39 -6.91 16 9 C 0.11 2.88 2.45 -91.92 -0.22 2.65 16 10 H 0.03 0.75 7.95 -51.93 -0.41 0.33 16 11 C -0.59 -17.12 8.49 -34.44 -0.29 -17.41 16 12 H 0.05 1.53 7.59 -52.49 -0.40 1.13 16 13 C 0.02 0.62 5.34 -17.82 -0.10 0.52 16 14 N -0.89 -28.06 13.40 55.43 0.74 -27.32 16 15 Si 1.07 26.11 29.90 -169.99 -5.08 21.03 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 19 C -0.11 -2.25 6.56 -25.32 -0.17 -2.42 16 20 C -0.02 -0.46 6.75 -26.89 -0.18 -0.64 16 21 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 22 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.69 7.15 -51.93 -0.37 0.31 16 28 H 0.15 2.35 7.26 -52.48 -0.38 1.97 16 29 H 0.29 9.10 5.50 -40.82 -0.22 8.87 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.45 7.75 -51.93 -0.40 1.04 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 271.68 15.07 4.09 4.09 Total: -1.00 -33.98 271.68 -6.80 -40.77 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -4.79 Total: -0.93 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -1.96 Total: -22.49 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.94 Total: -42.48 kcal Atomic # 14 Polarization: 26.11 SS G_CDS: -5.08 Total: 21.03 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -33.98 -6.80 -40.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261215664.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.064 kcal (2) G-P(sol) polarization free energy of solvation -33.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds