Wall clock time and date at job start Mon Mar 30 2020 02:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46949 * 2 1 4 4 N 1.46505 * 109.47299 * 119.99831 * 2 1 3 5 5 C 1.34885 * 126.03156 * 275.00720 * 4 2 1 6 6 C 1.35459 * 107.77210 * 179.97438 * 5 4 2 7 7 C 1.39849 * 107.91489 * 0.02562 * 6 5 4 8 8 N 1.31047 * 108.12861 * 359.97438 * 7 6 5 9 9 C 1.51323 * 109.51481 * 179.97438 * 7 6 5 10 10 H 1.09002 * 110.37226 * 136.20300 * 9 7 6 11 11 C 1.50695 * 110.29483 * 258.29359 * 9 7 6 12 12 H 1.07995 * 120.00496 * 115.79618 * 11 9 7 13 13 C 1.37880 * 119.99572 * 295.79552 * 11 9 7 14 14 N 1.31511 * 120.00327 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 119.99951 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47297 * 59.99744 * 15 13 11 17 17 H 1.48503 * 109.47261 * 299.99924 * 15 13 11 18 18 H 1.48500 * 109.47454 * 179.97438 * 15 13 11 19 19 C 1.54343 * 105.21778 * 17.22903 * 9 7 6 20 20 C 1.51285 * 142.52979 * 179.97438 * 6 5 4 21 21 H 1.08996 * 109.46729 * 60.00164 * 1 2 3 22 22 H 1.08996 * 109.46905 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47163 * 300.00065 * 1 2 3 24 24 H 1.09004 * 109.47376 * 239.99981 * 2 1 3 25 25 H 1.09006 * 109.47106 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.47271 * 299.99504 * 3 2 1 27 27 H 1.08995 * 109.47241 * 59.99983 * 3 2 1 28 28 H 1.08004 * 126.11122 * 359.93190 * 5 4 2 29 29 H 0.97006 * 119.99995 * 359.97438 * 14 13 11 30 30 H 1.09001 * 110.77235 * 91.75978 * 19 9 7 31 31 H 1.08999 * 110.76628 * 214.97511 * 19 9 7 32 32 H 1.09003 * 110.29172 * 43.87265 * 20 6 5 33 33 H 1.08991 * 110.38087 * 281.78101 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1932 -0.1394 2.4148 6 6 2.6564 -1.1059 3.2432 7 6 2.7689 -2.2880 2.5045 8 7 2.3859 -2.0393 1.2762 9 6 3.2856 -3.3949 3.3976 10 1 2.7247 -4.3137 3.2264 11 6 4.7538 -3.6255 3.1479 12 1 5.4713 -3.4356 3.9323 13 6 5.1809 -4.0791 1.9179 14 7 4.3071 -4.3100 0.9625 15 14 7.0006 -4.3657 1.6085 16 1 7.5109 -5.3826 2.5629 17 1 7.7415 -3.0928 1.7986 18 1 7.1962 -4.8500 0.2184 19 6 3.0605 -2.8910 4.8390 20 6 3.0917 -1.3571 4.6701 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 3.1301 1.4426 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.9991 0.8889 2.6821 29 1 3.3621 -4.1615 1.1232 30 1 2.0918 -3.2188 5.2162 31 1 3.8630 -3.2268 5.4956 32 1 2.3973 -0.8858 5.3657 33 1 4.1014 -0.9796 4.8310 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261215664.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:49 Heat of formation + Delta-G solvation = 48.604271 kcal Electronic energy + Delta-G solvation = -15187.059061 eV Core-core repulsion = 12827.250591 eV Total energy + Delta-G solvation = -2359.808470 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.24131 -38.16494 -35.68492 -34.38407 -31.11557 -29.59051 -28.41257 -27.98718 -25.48129 -24.13714 -21.30787 -20.77652 -20.42512 -18.65716 -17.31929 -16.38938 -15.86049 -15.63411 -15.48331 -15.10588 -14.43350 -13.90852 -13.66340 -13.47710 -13.37940 -13.16372 -12.91768 -12.59821 -12.39552 -12.28667 -12.02365 -12.01425 -11.89565 -11.50375 -10.95956 -10.80777 -10.45199 -9.80989 -8.94082 -8.52880 -6.28686 1.19602 1.49365 1.58837 1.75780 1.79329 2.13562 2.60753 3.22542 3.42049 3.79917 3.95028 4.08167 4.10840 4.30372 4.40822 4.49213 4.61501 4.65980 4.75328 4.80393 4.88466 4.99240 5.04351 5.13740 5.19658 5.24814 5.40572 5.52998 5.60174 5.91825 6.08105 6.34136 6.49968 6.68372 7.17403 7.55832 8.87462 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.028009 B = 0.010272 C = 0.008558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.446354 B = 2725.265829 C = 3271.178041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.144 3.856 3 C -0.150 4.150 4 N -0.381 5.381 5 C 0.065 3.935 6 C -0.297 4.297 7 C 0.059 3.941 8 N -0.334 5.334 9 C 0.093 3.907 10 H -0.014 1.014 11 C -0.603 4.603 12 H 0.058 0.942 13 C -0.034 4.034 14 N -0.923 5.923 15 Si 1.113 2.887 16 H -0.262 1.262 17 H -0.276 1.276 18 H -0.290 1.290 19 C -0.098 4.098 20 C -0.014 4.014 21 H 0.106 0.894 22 H 0.035 0.965 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.109 0.891 27 H 0.082 0.918 28 H 0.207 0.793 29 H 0.270 0.730 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.720 13.021 1.927 14.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.043 3.957 3 C -0.208 4.208 4 N -0.164 5.164 5 C -0.081 4.081 6 C -0.309 4.309 7 C -0.108 4.108 8 N -0.155 5.155 9 C 0.072 3.928 10 H 0.004 0.996 11 C -0.641 4.641 12 H 0.076 0.924 13 C -0.236 4.236 14 N -0.558 5.558 15 Si 0.935 3.065 16 H -0.187 1.187 17 H -0.202 1.202 18 H -0.215 1.215 19 C -0.136 4.136 20 C -0.052 4.052 21 H 0.125 0.875 22 H 0.054 0.946 23 H 0.089 0.911 24 H 0.095 0.905 25 H 0.066 0.934 26 H 0.128 0.872 27 H 0.101 0.899 28 H 0.223 0.777 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.911 12.136 -0.547 13.103 hybrid contribution -1.000 0.319 1.457 1.796 sum -5.911 12.455 0.910 13.816 Atomic orbital electron populations 1.22151 0.92214 1.01933 1.04551 1.21510 0.95941 0.93780 0.84435 1.22138 1.01203 0.91998 1.05477 1.49339 1.51349 1.06566 1.09115 1.21852 1.01602 0.99582 0.85028 1.21452 1.14949 0.94295 1.00169 1.24206 0.94716 1.00646 0.91200 1.77147 1.24012 0.94570 1.19750 1.18114 0.95090 0.88978 0.90577 0.99576 1.22158 0.91942 1.48913 1.01106 0.92426 1.27275 1.09977 0.93529 0.92771 1.70724 1.04664 1.44931 1.35512 0.83007 0.69911 0.77402 0.76152 1.18680 1.20220 1.21539 1.22244 1.00900 0.95619 0.94865 1.20140 1.00205 0.95078 0.89805 0.87526 0.94584 0.91075 0.90549 0.93352 0.87217 0.89918 0.77675 0.91839 0.91546 0.90471 0.89446 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.52 71.98 0.69 -2.84 16 2 C 0.14 4.26 3.93 44.99 0.18 4.43 16 3 C -0.15 -3.05 8.83 71.98 0.64 -2.41 16 4 N -0.38 -15.56 3.52 -327.40 -1.15 -16.71 16 5 C 0.06 2.39 10.59 83.58 0.89 3.28 16 6 C -0.30 -13.07 6.87 -19.93 -0.14 -13.21 16 7 C 0.06 3.20 6.21 43.26 0.27 3.47 16 8 N -0.33 -18.09 11.51 -46.80 -0.54 -18.63 16 9 C 0.09 5.13 2.45 -11.63 -0.03 5.10 16 10 H -0.01 -0.83 7.95 -2.39 -0.02 -0.85 16 11 C -0.60 -35.67 8.49 25.60 0.22 -35.46 16 12 H 0.06 3.27 7.59 -2.91 -0.02 3.24 16 13 C -0.03 -2.10 5.34 84.66 0.45 -1.65 16 14 N -0.92 -61.02 13.40 21.45 0.29 -60.74 16 15 Si 1.11 53.31 29.90 68.60 2.05 55.36 16 16 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 19 C -0.10 -4.16 6.56 31.51 0.21 -3.95 16 20 C -0.01 -0.54 6.75 30.49 0.21 -0.33 16 21 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 25 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.08 1.37 7.15 -2.39 -0.02 1.35 16 28 H 0.21 5.20 7.26 -2.91 -0.02 5.18 16 29 H 0.27 18.38 5.50 -92.70 -0.51 17.87 16 30 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.08 3.10 7.75 -2.39 -0.02 3.08 16 32 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -78.99 271.68 5.55 -73.43 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 1.34 Total: 10.85 kcal Atomic # 6 Polarization: -47.14 SS G_CDS: 3.57 Total: -43.57 kcal Atomic # 7 Polarization: -94.67 SS G_CDS: -1.40 Total: -96.07 kcal Atomic # 14 Polarization: 53.31 SS G_CDS: 2.05 Total: 55.36 kcal Total: -78.99 5.55 -73.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261215664.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.036 kcal (2) G-P(sol) polarization free energy of solvation -78.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds