Wall clock time and date at job start Mon Mar 30 2020 03:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.49871 * 2 1 4 4 C 1.53121 * 109.49322 * 120.05952 * 2 1 3 5 5 C 1.53279 * 109.70695 * 189.85306 * 4 2 1 6 6 N 1.46474 * 108.70445 * 309.25949 * 5 4 2 7 7 C 1.34404 * 128.44533 * 197.29868 * 6 5 4 8 8 N 1.30785 * 108.55294 * 179.87312 * 7 6 5 9 9 C 1.34435 * 109.32146 * 0.04283 * 8 7 6 10 10 C 1.50693 * 126.10287 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47525 * 270.02983 * 10 9 8 12 12 H 1.08001 * 119.99462 * 359.97438 * 11 10 9 13 13 C 1.37870 * 120.00433 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99689 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00220 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47420 * 89.99747 * 15 13 11 17 17 H 1.48509 * 109.47079 * 209.99708 * 15 13 11 18 18 H 1.48496 * 109.47072 * 329.99191 * 15 13 11 19 19 C 1.33862 * 107.79232 * 0.02562 * 9 8 7 20 20 C 1.50711 * 128.67548 * 179.88336 * 19 9 8 21 21 H 1.09001 * 109.46801 * 299.93848 * 1 2 3 22 22 H 1.09001 * 109.46998 * 59.93445 * 1 2 3 23 23 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.43265 * 309.92925 * 4 2 1 25 25 H 1.09003 * 109.42774 * 69.83462 * 4 2 1 26 26 H 1.09002 * 109.60002 * 69.02940 * 5 4 2 27 27 H 1.09004 * 109.59845 * 189.49721 * 5 4 2 28 28 H 1.08000 * 125.72520 * 359.84314 * 7 6 5 29 29 H 1.09007 * 109.46870 * 30.02597 * 10 9 8 30 30 H 1.08997 * 109.47152 * 150.02350 * 10 9 8 31 31 H 0.97004 * 120.00018 * 180.02562 * 14 13 11 32 32 H 1.09004 * 109.74826 * 76.19255 * 20 19 9 33 33 H 1.08997 * 109.74684 * 315.47054 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0410 -0.7230 1.2493 5 6 3.5537 -0.5157 1.3841 6 7 4.1897 -0.8546 0.1089 7 6 5.4842 -1.1223 -0.1342 8 7 5.6239 -1.3781 -1.4092 9 6 4.4283 -1.2809 -2.0160 10 6 4.1561 -1.4994 -3.4819 11 6 4.3048 -0.1942 -4.2205 12 1 4.5695 0.7038 -3.6821 13 6 4.1020 -0.1463 -5.5834 14 7 3.7792 -1.2398 -6.2390 15 14 4.2856 1.4716 -6.4987 16 1 5.6909 1.6268 -6.9528 17 1 3.3811 1.4794 -7.6766 18 1 3.9305 2.5949 -5.5946 19 6 3.5228 -0.9543 -1.0857 20 6 2.0425 -0.7251 -1.2518 21 1 -0.3633 0.5129 0.8906 22 1 -0.3633 0.5149 -0.8894 23 1 -0.3633 -1.0277 -0.0005 24 1 1.5401 -0.3223 2.1305 25 1 1.8279 -1.7886 1.1641 26 1 3.7596 0.5261 1.6299 27 1 3.9429 -1.1630 2.1701 28 1 6.2763 -1.1251 0.6000 29 1 4.8664 -2.2246 -3.8792 30 1 3.1416 -1.8764 -3.6109 31 1 3.6368 -1.2062 -7.1979 32 1 1.5312 -1.6819 -1.3574 33 1 1.8617 -0.1109 -2.1339 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261216649.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:20 Heat of formation + Delta-G solvation = 37.616431 kcal Electronic energy + Delta-G solvation = -14955.032345 eV Core-core repulsion = 12594.747406 eV Total energy + Delta-G solvation = -2360.284938 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.60239 -36.95699 -33.80616 -32.51682 -30.43577 -29.46982 -27.44657 -25.28839 -23.63738 -22.56185 -21.09036 -19.29851 -18.48274 -16.39301 -16.04057 -15.34439 -14.53215 -14.37563 -14.10901 -13.77416 -13.25295 -13.10180 -12.29239 -12.16003 -12.14134 -11.82835 -11.42971 -11.13196 -10.79126 -10.67217 -10.63537 -10.52052 -10.47979 -9.74099 -9.34071 -8.94397 -8.62072 -8.26573 -7.27183 -5.88869 -3.90095 2.78628 3.34721 3.39381 3.44822 3.48631 4.08051 4.57704 4.59681 4.67095 4.80877 5.16101 5.23393 5.26254 5.34705 5.45738 5.61346 5.62301 5.73788 5.77960 5.89828 6.02247 6.12597 6.29491 6.45775 6.54239 6.67291 7.13294 7.61691 7.67118 7.89063 8.03504 8.08867 8.53473 9.02264 9.13461 9.71592 11.21232 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.029887 B = 0.008599 C = 0.007421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.637796 B = 3255.389358 C = 3772.101696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 H 0.071 0.929 4 C -0.126 4.126 5 C 0.109 3.891 6 N -0.467 5.467 7 C 0.159 3.841 8 N -0.491 5.491 9 C 0.058 3.942 10 C 0.093 3.907 11 C -0.498 4.498 12 H 0.052 0.948 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.048 4.048 20 C -0.031 4.031 21 H 0.051 0.949 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.193 0.807 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.260 0.740 32 H 0.072 0.928 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.659 1.835 15.995 17.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.090 0.910 4 C -0.164 4.164 5 C -0.014 4.014 6 N -0.154 5.154 7 C -0.122 4.122 8 N -0.211 5.211 9 C -0.070 4.070 10 C 0.055 3.945 11 C -0.537 4.537 12 H 0.071 0.929 13 C -0.144 4.144 14 N -0.537 5.537 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.200 1.200 19 C -0.158 4.158 20 C -0.069 4.069 21 H 0.070 0.930 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.209 0.791 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.010 1.603 15.573 16.437 hybrid contribution -0.404 1.137 0.040 1.208 sum -5.415 2.740 15.613 16.751 Atomic orbital electron populations 1.21800 0.94618 1.01934 1.01767 1.21258 0.95910 0.99780 0.94589 0.91010 1.21908 0.93412 1.02010 0.99035 1.21781 0.93963 1.01111 0.84531 1.45221 1.08499 1.53964 1.07747 1.24596 0.85145 1.06900 0.95566 1.70454 1.26659 1.20395 1.03581 1.21243 0.87093 1.00877 0.97749 1.17626 0.97071 0.97459 0.82301 1.21037 1.46161 0.94336 0.92127 0.92934 1.24971 0.95603 0.96313 0.97550 1.69963 1.48401 1.27082 1.08263 0.86584 0.77947 0.84121 0.79292 1.20706 1.21288 1.20042 1.20766 0.95825 1.13907 0.85330 1.20135 0.88218 1.00673 0.97866 0.92960 0.92057 0.92550 0.90308 0.91011 0.90705 0.89999 0.79064 0.95140 0.95227 0.93057 0.90990 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.17 37.16 0.34 -1.17 16 2 C -0.10 -1.23 2.74 -90.31 -0.25 -1.48 16 3 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 4 C -0.13 -1.34 5.22 -26.52 -0.14 -1.48 16 5 C 0.11 1.26 7.00 -3.91 -0.03 1.23 16 6 N -0.47 -7.95 3.13 -114.09 -0.36 -8.31 16 7 C 0.16 2.92 12.66 -90.72 -1.15 1.77 16 8 N -0.49 -11.65 11.27 -11.08 -0.12 -11.77 16 9 C 0.06 1.44 6.28 -82.99 -0.52 0.92 16 10 C 0.09 2.62 5.36 -29.04 -0.16 2.46 16 11 C -0.50 -14.79 9.09 -34.44 -0.31 -15.10 16 12 H 0.05 1.58 7.74 -52.49 -0.41 1.17 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 15 Si 0.89 22.40 29.54 -169.99 -5.02 17.38 16 16 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C -0.05 -0.97 6.56 -81.73 -0.54 -1.51 16 20 C -0.03 -0.52 5.31 -27.63 -0.15 -0.67 16 21 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.08 0.63 8.11 -51.93 -0.42 0.21 16 25 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.19 2.60 8.06 -52.49 -0.42 2.18 16 29 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.03 0.83 8.01 -51.93 -0.42 0.42 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 32 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 33 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 LS Contribution 274.97 15.07 4.14 4.14 Total: -1.00 -33.99 274.97 -8.64 -42.63 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -5.02 Total: -3.91 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -2.99 Total: -13.48 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.25 Total: -46.76 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -33.99 -8.64 -42.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261216649.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.246 kcal (2) G-P(sol) polarization free energy of solvation -33.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds