Wall clock time and date at job start Mon Mar 30 2020 03:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.49871 * 2 1 4 4 C 1.53121 * 109.49322 * 120.05952 * 2 1 3 5 5 C 1.53279 * 109.70695 * 189.85306 * 4 2 1 6 6 N 1.46474 * 108.70445 * 309.25949 * 5 4 2 7 7 C 1.34404 * 128.44533 * 197.29868 * 6 5 4 8 8 N 1.30785 * 108.55294 * 179.87312 * 7 6 5 9 9 C 1.34435 * 109.32146 * 0.04283 * 8 7 6 10 10 C 1.50693 * 126.10287 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47525 * 270.02983 * 10 9 8 12 12 H 1.08001 * 119.99462 * 359.97438 * 11 10 9 13 13 C 1.37870 * 120.00433 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99689 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00220 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47420 * 89.99747 * 15 13 11 17 17 H 1.48509 * 109.47079 * 209.99708 * 15 13 11 18 18 H 1.48496 * 109.47072 * 329.99191 * 15 13 11 19 19 C 1.33862 * 107.79232 * 0.02562 * 9 8 7 20 20 C 1.50711 * 128.67548 * 179.88336 * 19 9 8 21 21 H 1.09001 * 109.46801 * 299.93848 * 1 2 3 22 22 H 1.09001 * 109.46998 * 59.93445 * 1 2 3 23 23 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.43265 * 309.92925 * 4 2 1 25 25 H 1.09003 * 109.42774 * 69.83462 * 4 2 1 26 26 H 1.09002 * 109.60002 * 69.02940 * 5 4 2 27 27 H 1.09004 * 109.59845 * 189.49721 * 5 4 2 28 28 H 1.08000 * 125.72520 * 359.84314 * 7 6 5 29 29 H 1.09007 * 109.46870 * 30.02597 * 10 9 8 30 30 H 1.08997 * 109.47152 * 150.02350 * 10 9 8 31 31 H 0.97004 * 120.00018 * 180.02562 * 14 13 11 32 32 H 1.09004 * 109.74826 * 76.19255 * 20 19 9 33 33 H 1.08997 * 109.74684 * 315.47054 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0410 -0.7230 1.2493 5 6 3.5537 -0.5157 1.3841 6 7 4.1897 -0.8546 0.1089 7 6 5.4842 -1.1223 -0.1342 8 7 5.6239 -1.3781 -1.4092 9 6 4.4283 -1.2809 -2.0160 10 6 4.1561 -1.4994 -3.4819 11 6 4.3048 -0.1942 -4.2205 12 1 4.5695 0.7038 -3.6821 13 6 4.1020 -0.1463 -5.5834 14 7 3.7792 -1.2398 -6.2390 15 14 4.2856 1.4716 -6.4987 16 1 5.6909 1.6268 -6.9528 17 1 3.3811 1.4794 -7.6766 18 1 3.9305 2.5949 -5.5946 19 6 3.5228 -0.9543 -1.0857 20 6 2.0425 -0.7251 -1.2518 21 1 -0.3633 0.5129 0.8906 22 1 -0.3633 0.5149 -0.8894 23 1 -0.3633 -1.0277 -0.0005 24 1 1.5401 -0.3223 2.1305 25 1 1.8279 -1.7886 1.1641 26 1 3.7596 0.5261 1.6299 27 1 3.9429 -1.1630 2.1701 28 1 6.2763 -1.1251 0.6000 29 1 4.8664 -2.2246 -3.8792 30 1 3.1416 -1.8764 -3.6109 31 1 3.6368 -1.2062 -7.1979 32 1 1.5312 -1.6819 -1.3574 33 1 1.8617 -0.1109 -2.1339 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261216649.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:19 Heat of formation + Delta-G solvation = 16.896177 kcal Electronic energy + Delta-G solvation = -14955.930842 eV Core-core repulsion = 12594.747406 eV Total energy + Delta-G solvation = -2361.183436 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.09220 -38.08763 -35.66847 -34.26815 -32.01785 -30.96519 -28.94021 -26.87208 -25.16870 -24.13875 -22.33081 -20.77322 -19.84070 -18.51167 -17.60734 -16.57794 -16.44898 -15.56755 -15.40980 -15.17871 -14.54175 -14.19860 -14.19115 -13.87616 -13.27791 -13.22126 -13.15285 -12.62222 -12.59093 -12.50576 -11.88593 -11.80532 -11.66965 -11.54094 -11.47954 -10.67502 -10.50629 -10.14617 -8.95973 -8.15725 -6.29043 1.28527 1.37611 1.40391 1.51100 2.08788 2.31588 2.50716 3.12455 3.64392 3.76026 3.79746 3.90742 4.05301 4.38177 4.39448 4.47332 4.64228 4.75600 4.76996 4.91116 4.94507 4.97052 5.02931 5.18902 5.30818 5.33006 5.45254 5.57401 5.63341 5.76969 5.98544 6.27568 6.61821 6.80079 7.37546 7.41315 8.93108 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.029887 B = 0.008599 C = 0.007421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.637796 B = 3255.389358 C = 3772.101696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 H 0.066 0.934 4 C -0.121 4.121 5 C 0.098 3.902 6 N -0.458 5.458 7 C 0.176 3.824 8 N -0.549 5.549 9 C 0.000 4.000 10 C 0.108 3.892 11 C -0.518 4.518 12 H 0.042 0.958 13 C 0.003 3.997 14 N -0.931 5.931 15 Si 0.967 3.033 16 H -0.275 1.275 17 H -0.273 1.273 18 H -0.266 1.266 19 C -0.037 4.037 20 C -0.034 4.034 21 H 0.080 0.920 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.120 0.880 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.118 0.882 28 H 0.243 0.757 29 H -0.014 1.014 30 H 0.010 0.990 31 H 0.266 0.734 32 H 0.073 0.927 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.358 3.468 18.866 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.085 0.915 4 C -0.158 4.158 5 C -0.022 4.022 6 N -0.143 5.143 7 C -0.106 4.106 8 N -0.270 5.270 9 C -0.127 4.127 10 C 0.070 3.930 11 C -0.556 4.556 12 H 0.060 0.940 13 C -0.194 4.194 14 N -0.571 5.571 15 Si 0.791 3.209 16 H -0.201 1.201 17 H -0.198 1.198 18 H -0.191 1.191 19 C -0.150 4.150 20 C -0.072 4.072 21 H 0.098 0.902 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.139 0.861 25 H 0.086 0.914 26 H 0.114 0.886 27 H 0.136 0.864 28 H 0.259 0.741 29 H 0.005 0.995 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.729 3.238 18.480 19.617 hybrid contribution -0.171 0.581 -0.774 0.983 sum -5.901 3.819 17.706 19.050 Atomic orbital electron populations 1.21772 0.92734 1.02524 1.02652 1.21225 0.97455 0.98959 0.93281 0.91507 1.21945 0.93025 1.01706 0.99170 1.22340 0.94286 1.03252 0.82316 1.45500 1.07959 1.52261 1.08609 1.25434 0.86683 1.03891 0.94614 1.70271 1.27076 1.23114 1.06502 1.20791 0.89379 1.05647 0.96840 1.17214 0.94526 0.95729 0.85528 1.21233 1.46877 0.94535 0.92971 0.93980 1.25920 0.94727 1.00471 0.98308 1.70088 1.48676 1.29485 1.08835 0.85428 0.78255 0.79174 0.78053 1.20087 1.19763 1.19082 1.20927 0.96654 1.11507 0.85922 1.20207 0.86731 1.00877 0.99416 0.90157 0.93125 0.92127 0.86143 0.91387 0.88591 0.86362 0.74084 0.99543 0.97135 0.92546 0.90843 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.17 71.98 0.66 -1.90 16 2 C -0.09 -2.10 2.74 -10.59 -0.03 -2.13 16 3 H 0.07 1.63 8.12 -2.39 -0.02 1.62 16 4 C -0.12 -2.05 5.22 30.73 0.16 -1.89 16 5 C 0.10 1.80 7.00 86.48 0.61 2.41 16 6 N -0.46 -14.61 3.13 -514.85 -1.61 -16.23 16 7 C 0.18 6.15 12.66 180.38 2.28 8.44 16 8 N -0.55 -26.73 11.27 -188.96 -2.13 -28.86 16 9 C 0.00 0.02 6.28 41.16 0.26 0.28 16 10 C 0.11 6.55 5.36 29.10 0.16 6.71 16 11 C -0.52 -32.46 9.09 25.60 0.23 -32.23 16 12 H 0.04 2.65 7.74 -2.91 -0.02 2.63 16 13 C 0.00 0.20 5.46 84.65 0.46 0.67 16 14 N -0.93 -59.08 13.29 21.44 0.28 -58.80 16 15 Si 0.97 46.92 29.54 68.60 2.03 48.95 16 16 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 17 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 19 C -0.04 -1.52 6.56 40.73 0.27 -1.25 16 20 C -0.03 -1.18 5.31 30.01 0.16 -1.02 16 21 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.12 1.16 8.11 -2.39 -0.02 1.14 16 25 H 0.07 1.25 8.11 -2.39 -0.02 1.24 16 26 H 0.10 1.46 8.14 -2.39 -0.02 1.45 16 27 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.24 5.58 8.06 -2.91 -0.02 5.56 16 29 H -0.01 -0.92 8.14 -2.38 -0.02 -0.94 16 30 H 0.01 0.65 8.01 -2.39 -0.02 0.63 16 31 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 32 H 0.07 2.49 8.11 -2.38 -0.02 2.47 16 33 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -80.00 274.97 4.86 -75.14 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: 1.07 Total: 1.72 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: 5.22 Total: -21.92 kcal Atomic # 7 Polarization: -100.43 SS G_CDS: -3.46 Total: -103.89 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -80.00 4.86 -75.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261216649.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.036 kcal (2) G-P(sol) polarization free energy of solvation -79.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds