Wall clock time and date at job start Mon Mar 30 2020 03:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 C 1.39872 * 126.04025 * 59.69257 * 12 2 1 14 14 N 1.30837 * 108.20170 * 179.81588 * 13 12 2 15 15 N 1.40090 * 108.20347 * 0.43809 * 14 13 12 16 16 C 1.46501 * 126.03331 * 179.74039 * 15 14 13 17 17 C 1.53785 * 113.61083 * 194.11632 * 16 15 14 18 18 C 1.53959 * 87.01727 * 220.04687 * 17 16 15 19 19 C 1.53776 * 113.61341 * 96.50550 * 16 15 14 20 20 C 1.34949 * 107.92588 * 359.71990 * 15 14 13 21 21 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 22 22 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 24 24 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 25 25 H 1.07996 * 125.89854 * 359.97438 * 13 12 2 26 26 H 1.08997 * 112.85270 * 325.30481 * 16 15 14 27 27 H 1.09006 * 113.61197 * 334.55881 * 17 16 15 28 28 H 1.08993 * 113.61826 * 105.47332 * 17 16 15 29 29 H 1.08994 * 113.53970 * 270.81000 * 18 17 16 30 30 H 1.09003 * 113.74332 * 139.93732 * 18 17 16 31 31 H 1.08994 * 113.61486 * 254.52035 * 19 16 15 32 32 H 1.08994 * 113.61634 * 25.43391 * 19 16 15 33 33 H 1.07999 * 126.12654 * 179.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 6 2.0323 -0.7104 1.2306 13 6 1.7684 -2.0390 1.5791 14 7 2.3774 -2.2939 2.7087 15 7 3.0408 -1.1307 3.1204 16 6 3.8405 -0.9800 4.3386 17 6 4.1538 0.4834 4.6927 18 6 5.5626 0.0025 5.0856 19 6 5.3497 -1.1687 4.1119 20 6 2.8134 -0.1738 2.1964 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.7173 1.1669 -3.4844 25 1 1.1680 -2.7351 1.0123 26 1 3.4492 -1.5576 5.1760 27 1 4.1451 1.1523 3.8320 28 1 3.5715 0.8639 5.5318 29 1 5.6424 -0.3054 6.1281 30 1 6.3588 0.6827 4.7831 31 1 5.7315 -2.1197 4.4829 32 1 5.6686 -0.9522 3.0923 33 1 3.1875 0.8390 2.2233 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261217522.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:13 Heat of formation + Delta-G solvation = 89.592227 kcal Electronic energy + Delta-G solvation = -14683.104159 eV Core-core repulsion = 12325.073061 eV Total energy + Delta-G solvation = -2358.031099 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.65503 -38.29760 -34.24354 -31.31113 -30.46287 -28.01510 -25.80354 -25.03472 -24.71829 -21.61592 -20.80081 -19.27963 -18.78764 -16.77582 -15.81217 -15.67504 -14.57007 -14.22980 -13.88471 -13.28177 -12.79278 -12.60815 -12.51833 -12.12839 -11.88402 -11.30411 -11.25565 -10.89792 -10.83438 -10.63515 -10.60811 -10.25765 -10.22361 -9.87391 -9.33724 -8.85946 -8.61222 -8.27335 -7.31782 -5.91296 -3.96484 2.61955 3.12309 3.34167 3.42214 3.47120 3.81451 4.30266 4.43700 4.51883 4.70577 4.72294 5.28275 5.39310 5.43526 5.55354 5.65582 5.70108 5.78168 5.80768 5.91994 6.24980 6.51698 6.65945 6.87236 7.02970 7.20876 7.38917 7.58065 7.77646 7.85933 8.04547 8.22343 8.49305 8.59222 9.06975 9.67749 11.14331 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.040429 B = 0.006777 C = 0.006570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.413384 B = 4130.754131 C = 4260.551491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.106 3.894 3 H 0.029 0.971 4 C -0.499 4.499 5 H 0.055 0.945 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.889 3.111 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.286 1.286 12 C -0.172 4.172 13 C 0.055 3.945 14 N -0.319 5.319 15 N -0.379 5.379 16 C 0.145 3.855 17 C -0.146 4.146 18 C -0.138 4.138 19 C -0.150 4.150 20 C 0.019 3.981 21 H 0.082 0.918 22 H 0.026 0.974 23 H 0.005 0.995 24 H 0.258 0.742 25 H 0.175 0.825 26 H 0.112 0.888 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.012 -0.371 12.777 14.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.086 3.914 3 H 0.047 0.953 4 C -0.537 4.537 5 H 0.073 0.927 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.717 3.283 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.212 1.212 12 C -0.182 4.182 13 C -0.130 4.130 14 N -0.140 5.140 15 N -0.163 5.163 16 C 0.041 3.959 17 C -0.185 4.185 18 C -0.176 4.176 19 C -0.188 4.188 20 C -0.124 4.124 21 H 0.100 0.900 22 H 0.045 0.955 23 H 0.024 0.976 24 H 0.068 0.932 25 H 0.192 0.808 26 H 0.130 0.870 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 6.243 -1.124 13.642 15.044 hybrid contribution 0.180 0.159 -1.565 1.583 sum 6.423 -0.965 12.077 13.713 Atomic orbital electron populations 1.21738 0.98138 0.99012 0.99783 1.17217 0.92189 0.94529 0.87443 0.95325 1.21202 1.30452 1.12022 0.90045 0.92663 1.24953 0.95270 0.95061 0.98829 1.69898 1.37242 1.23070 1.23055 0.86582 0.78646 0.79732 0.83326 1.19864 1.21090 1.21196 1.20890 1.03178 0.94690 0.99482 1.23711 0.98950 0.96931 0.93434 1.77135 1.14261 1.06455 1.16199 1.48336 1.41103 1.08575 1.18275 1.22651 0.89686 0.97890 0.85624 1.23421 0.97018 0.95546 1.02469 1.22727 0.97035 0.98266 0.99560 1.23448 0.95310 0.99236 1.00847 1.22106 1.03123 0.95507 0.91652 0.89967 0.95516 0.97572 0.93193 0.80789 0.87031 0.88746 0.90342 0.89759 0.90494 0.90771 0.89255 0.82268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.86 37.16 0.33 -2.83 16 2 C 0.11 2.68 2.66 -92.92 -0.25 2.43 16 3 H 0.03 0.77 8.11 -51.93 -0.42 0.35 16 4 C -0.50 -13.77 8.42 -34.44 -0.29 -14.06 16 5 H 0.06 1.55 7.73 -52.49 -0.41 1.14 16 6 C 0.06 1.64 5.31 -17.82 -0.09 1.55 16 7 N -0.89 -25.53 11.33 55.43 0.63 -24.91 16 8 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 C -0.17 -3.85 4.74 -105.05 -0.50 -4.35 16 13 C 0.06 1.19 11.52 -17.36 -0.20 0.99 16 14 N -0.32 -6.55 12.58 30.62 0.39 -6.17 16 15 N -0.38 -6.83 3.81 -54.07 -0.21 -7.04 16 16 C 0.14 1.92 5.02 -67.12 -0.34 1.58 16 17 C -0.15 -1.53 7.46 -25.82 -0.19 -1.73 16 18 C -0.14 -1.22 8.09 -25.82 -0.21 -1.43 16 19 C -0.15 -1.73 7.88 -25.92 -0.20 -1.94 16 20 C 0.02 0.36 10.58 -17.22 -0.18 0.18 16 21 H 0.08 2.20 6.08 -51.93 -0.32 1.88 16 22 H 0.03 0.62 8.02 -51.93 -0.42 0.20 16 23 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 24 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.18 3.52 8.06 -52.49 -0.42 3.10 16 26 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.09 1.05 6.32 -51.93 -0.33 0.72 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.16 2.68 6.69 -52.49 -0.35 2.33 16 LS Contribution 275.42 15.07 4.15 4.15 Total: -1.00 -30.35 275.42 -6.94 -37.30 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -4.76 Total: -0.20 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -2.13 Total: -19.60 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.81 Total: -38.11 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.35 -6.94 -37.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261217522.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.890 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds