Wall clock time and date at job start Mon Mar 30 2020 03:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47583 * 2 1 4 4 C 1.50701 * 109.46971 * 120.00794 * 2 1 3 5 5 H 1.08002 * 120.00124 * 119.99998 * 4 2 1 6 6 C 1.37877 * 119.99921 * 299.99410 * 4 2 1 7 7 N 1.31517 * 119.99648 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00002 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47101 * 90.00277 * 8 6 4 10 10 H 1.48501 * 109.47000 * 209.99923 * 8 6 4 11 11 H 1.48503 * 109.47331 * 330.00244 * 8 6 4 12 12 C 1.50703 * 109.47019 * 240.00372 * 2 1 3 13 13 C 1.39875 * 126.04085 * 300.02662 * 12 2 1 14 14 N 1.30829 * 108.20298 * 179.73658 * 13 12 2 15 15 N 1.40087 * 108.20855 * 359.97438 * 14 13 12 16 16 C 1.46500 * 126.04101 * 179.97438 * 15 14 13 17 17 C 1.53771 * 113.61505 * 194.11449 * 16 15 14 18 18 C 1.53955 * 87.02020 * 220.04717 * 17 16 15 19 19 C 1.53777 * 87.11031 * 25.36183 * 18 17 16 20 20 C 1.34946 * 107.92254 * 0.02562 * 15 14 13 21 21 H 1.08994 * 109.46845 * 59.99667 * 1 2 3 22 22 H 1.08994 * 109.46874 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46369 * 299.99831 * 1 2 3 24 24 H 0.97006 * 119.99375 * 179.97438 * 7 6 4 25 25 H 1.08004 * 125.89555 * 359.71602 * 13 12 2 26 26 H 1.09004 * 112.84862 * 325.30791 * 16 15 14 27 27 H 1.08998 * 113.61851 * 334.56432 * 17 16 15 28 28 H 1.09007 * 113.61996 * 105.47210 * 17 16 15 29 29 H 1.09005 * 113.53755 * 270.80958 * 18 17 16 30 30 H 1.09000 * 113.74440 * 139.94382 * 18 17 16 31 31 H 1.08999 * 113.61612 * 220.08885 * 19 18 17 32 32 H 1.09007 * 113.61400 * 89.18728 * 19 18 17 33 33 H 1.07999 * 126.12479 * 180.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3225 -1.1200 4.0078 9 1 3.6305 -0.5445 4.4118 10 1 1.3445 -0.9494 5.1121 11 1 2.4880 -2.5658 3.7119 12 6 2.0324 -0.7103 -1.2305 13 6 1.7731 -2.0406 -1.5763 14 7 2.3726 -2.2921 -2.7117 15 7 3.0329 -1.1279 -3.1253 16 6 3.8274 -0.9752 -4.3466 17 6 4.7001 0.2908 -4.3596 18 6 4.3191 0.4410 -5.8436 19 6 3.0452 -0.3560 -5.5169 20 6 2.8088 -0.1721 -2.1993 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 0.7083 1.1606 3.4845 25 1 1.1805 -2.7396 -1.0046 26 1 4.3695 -1.8820 -4.6150 27 1 4.3170 1.0917 -3.7273 28 1 5.7597 0.0925 -4.1978 29 1 4.9969 -0.0777 -6.5217 30 1 4.1250 1.4704 -6.1449 31 1 2.7706 -1.0757 -6.2880 32 1 2.2088 0.2678 -5.2015 33 1 3.1817 0.8410 -2.2269 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261217523.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:16 Heat of formation + Delta-G solvation = 89.692876 kcal Electronic energy + Delta-G solvation = -14672.693684 eV Core-core repulsion = 12314.666950 eV Total energy + Delta-G solvation = -2358.026734 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.65795 -38.30566 -34.24349 -31.30978 -30.46381 -28.01468 -25.80993 -25.03616 -24.71945 -21.62009 -20.80242 -19.27153 -18.79131 -16.79693 -15.82618 -15.65006 -14.57802 -14.24229 -13.85193 -13.25788 -12.78767 -12.68665 -12.55818 -12.12177 -11.82290 -11.33074 -11.24844 -10.87305 -10.83349 -10.68955 -10.58410 -10.25556 -10.24636 -9.86565 -9.33493 -8.86912 -8.61356 -8.26506 -7.31872 -5.90942 -3.96131 2.61838 3.12354 3.35636 3.42163 3.46242 3.81456 4.29886 4.42852 4.52189 4.69143 4.71834 5.28239 5.39619 5.43623 5.53906 5.65057 5.69559 5.76588 5.80644 5.90651 6.23567 6.51729 6.65923 6.87250 7.02824 7.20926 7.38902 7.58058 7.77610 7.85886 8.04762 8.22483 8.49361 8.59404 9.06958 9.67972 11.14625 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.046844 B = 0.006479 C = 0.006435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.579175 B = 4320.384778 C = 4349.863060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.106 3.894 3 H 0.029 0.971 4 C -0.500 4.500 5 H 0.055 0.945 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.890 3.110 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.275 1.275 12 C -0.172 4.172 13 C 0.056 3.944 14 N -0.320 5.320 15 N -0.379 5.379 16 C 0.145 3.855 17 C -0.146 4.146 18 C -0.138 4.138 19 C -0.149 4.149 20 C 0.018 3.982 21 H 0.005 0.995 22 H 0.026 0.974 23 H 0.082 0.918 24 H 0.259 0.741 25 H 0.175 0.825 26 H 0.112 0.888 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.997 -0.013 -13.378 14.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.087 3.913 3 H 0.047 0.953 4 C -0.538 4.538 5 H 0.073 0.927 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.718 3.282 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.200 1.200 12 C -0.182 4.182 13 C -0.130 4.130 14 N -0.141 5.141 15 N -0.163 5.163 16 C 0.042 3.958 17 C -0.185 4.185 18 C -0.176 4.176 19 C -0.188 4.188 20 C -0.124 4.124 21 H 0.024 0.976 22 H 0.045 0.955 23 H 0.101 0.899 24 H 0.069 0.931 25 H 0.192 0.808 26 H 0.130 0.870 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.225 -0.767 -14.237 15.185 hybrid contribution 0.206 0.147 1.567 1.588 sum 5.431 -0.620 -12.670 13.799 Atomic orbital electron populations 1.21738 0.98139 0.99008 0.99780 1.17210 0.92170 0.94521 0.87443 0.95340 1.21165 1.30450 1.12132 0.90059 0.92712 1.24954 0.95239 0.95084 0.98824 1.69894 1.37081 1.23144 1.23148 0.86629 0.78485 0.80173 0.82912 1.20880 1.21336 1.19958 1.20893 1.03217 0.94638 0.99493 1.23713 0.99158 0.96967 0.93176 1.77131 1.14732 1.06340 1.15850 1.48332 1.41253 1.08533 1.18169 1.22648 0.92080 0.98766 0.82349 1.23422 1.00302 0.97346 0.97411 1.22725 0.97614 1.01176 0.96068 1.23441 0.97839 0.99696 0.97790 1.22106 1.03124 0.95551 0.91609 0.97609 0.95522 0.89931 0.93145 0.80781 0.87027 0.88749 0.90295 0.89742 0.90514 0.90772 0.89375 0.82269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.86 37.16 0.33 -2.83 16 2 C 0.11 2.69 2.66 -92.92 -0.25 2.44 16 3 H 0.03 0.77 8.11 -51.93 -0.42 0.35 16 4 C -0.50 -13.80 8.42 -34.44 -0.29 -14.09 16 5 H 0.05 1.53 7.73 -52.49 -0.41 1.12 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -25.53 11.32 55.43 0.63 -24.90 16 8 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 12 C -0.17 -3.85 4.74 -105.05 -0.50 -4.35 16 13 C 0.06 1.19 11.52 -17.37 -0.20 0.99 16 14 N -0.32 -6.55 12.58 30.63 0.39 -6.17 16 15 N -0.38 -6.83 3.81 -54.08 -0.21 -7.04 16 16 C 0.14 1.92 5.02 -67.12 -0.34 1.58 16 17 C -0.15 -1.55 7.46 -25.83 -0.19 -1.75 16 18 C -0.14 -1.19 8.09 -25.83 -0.21 -1.40 16 19 C -0.15 -1.66 7.88 -25.92 -0.20 -1.86 16 20 C 0.02 0.36 10.58 -17.22 -0.18 0.18 16 21 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 22 H 0.03 0.62 8.02 -51.93 -0.42 0.20 16 23 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 24 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.18 3.53 8.06 -52.48 -0.42 3.11 16 26 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.09 1.06 6.32 -51.93 -0.33 0.73 16 28 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 1.10 8.14 -51.92 -0.42 0.67 16 33 H 0.16 2.68 6.69 -52.49 -0.35 2.33 16 LS Contribution 275.40 15.07 4.15 4.15 Total: -1.00 -30.32 275.40 -6.94 -37.26 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -4.75 Total: -0.24 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -2.13 Total: -19.53 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.81 Total: -38.11 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.32 -6.94 -37.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261217523.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.958 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds