Wall clock time and date at job start Mon Mar 30 2020 03:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47583 * 2 1 4 4 C 1.50701 * 109.46971 * 120.00794 * 2 1 3 5 5 H 1.08002 * 120.00124 * 119.99998 * 4 2 1 6 6 C 1.37877 * 119.99921 * 299.99410 * 4 2 1 7 7 N 1.31517 * 119.99648 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00002 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47101 * 90.00277 * 8 6 4 10 10 H 1.48501 * 109.47000 * 209.99923 * 8 6 4 11 11 H 1.48503 * 109.47331 * 330.00244 * 8 6 4 12 12 C 1.50703 * 109.47019 * 240.00372 * 2 1 3 13 13 C 1.39875 * 126.04085 * 300.02662 * 12 2 1 14 14 N 1.30829 * 108.20298 * 179.73658 * 13 12 2 15 15 N 1.40087 * 108.20855 * 359.97438 * 14 13 12 16 16 C 1.46500 * 126.04101 * 179.97438 * 15 14 13 17 17 C 1.53771 * 113.61505 * 194.11449 * 16 15 14 18 18 C 1.53955 * 87.02020 * 220.04717 * 17 16 15 19 19 C 1.53777 * 87.11031 * 25.36183 * 18 17 16 20 20 C 1.34946 * 107.92254 * 0.02562 * 15 14 13 21 21 H 1.08994 * 109.46845 * 59.99667 * 1 2 3 22 22 H 1.08994 * 109.46874 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46369 * 299.99831 * 1 2 3 24 24 H 0.97006 * 119.99375 * 179.97438 * 7 6 4 25 25 H 1.08004 * 125.89555 * 359.71602 * 13 12 2 26 26 H 1.09004 * 112.84862 * 325.30791 * 16 15 14 27 27 H 1.08998 * 113.61851 * 334.56432 * 17 16 15 28 28 H 1.09007 * 113.61996 * 105.47210 * 17 16 15 29 29 H 1.09005 * 113.53755 * 270.80958 * 18 17 16 30 30 H 1.09000 * 113.74440 * 139.94382 * 18 17 16 31 31 H 1.08999 * 113.61612 * 220.08885 * 19 18 17 32 32 H 1.09007 * 113.61400 * 89.18728 * 19 18 17 33 33 H 1.07999 * 126.12479 * 180.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3225 -1.1200 4.0078 9 1 3.6305 -0.5445 4.4118 10 1 1.3445 -0.9494 5.1121 11 1 2.4880 -2.5658 3.7119 12 6 2.0324 -0.7103 -1.2305 13 6 1.7731 -2.0406 -1.5763 14 7 2.3726 -2.2921 -2.7117 15 7 3.0329 -1.1279 -3.1253 16 6 3.8274 -0.9752 -4.3466 17 6 4.7001 0.2908 -4.3596 18 6 4.3191 0.4410 -5.8436 19 6 3.0452 -0.3560 -5.5169 20 6 2.8088 -0.1721 -2.1993 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 0.7083 1.1606 3.4845 25 1 1.1805 -2.7396 -1.0046 26 1 4.3695 -1.8820 -4.6150 27 1 4.3170 1.0917 -3.7273 28 1 5.7597 0.0925 -4.1978 29 1 4.9969 -0.0777 -6.5217 30 1 4.1250 1.4704 -6.1449 31 1 2.7706 -1.0757 -6.2880 32 1 2.2088 0.2678 -5.2015 33 1 3.1817 0.8410 -2.2269 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261217523.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:15 Heat of formation + Delta-G solvation = 72.721664 kcal Electronic energy + Delta-G solvation = -14673.429611 eV Core-core repulsion = 12314.666950 eV Total energy + Delta-G solvation = -2358.762661 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.12161 -39.34099 -36.20845 -33.17308 -32.02035 -29.67272 -27.11936 -26.68200 -25.92001 -23.39609 -22.13334 -20.80221 -20.03160 -18.40429 -17.68267 -16.60633 -16.48939 -15.63141 -15.29570 -14.77300 -14.58413 -14.10540 -13.73526 -13.39637 -13.20776 -13.10935 -12.79943 -12.69566 -12.26438 -12.18959 -12.12998 -11.82276 -11.54346 -11.40596 -11.18393 -10.88896 -10.37675 -10.11397 -8.96537 -8.01752 -6.14434 1.08025 1.44050 1.45311 1.55447 1.78746 2.11689 2.50595 3.24926 3.35197 3.56402 3.81411 3.86221 4.06763 4.15704 4.57794 4.70860 4.72101 4.81887 4.86879 4.96372 5.00832 5.05504 5.10895 5.15430 5.34133 5.39539 5.42829 5.67388 5.89730 6.02740 6.18446 6.34148 6.49531 6.93285 6.95422 7.52873 9.02124 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.046844 B = 0.006479 C = 0.006435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.579175 B = 4320.384778 C = 4349.863060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.110 3.890 3 H 0.005 0.995 4 C -0.514 4.514 5 H 0.045 0.955 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.950 3.050 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.272 1.272 12 C -0.209 4.209 13 C 0.042 3.958 14 N -0.332 5.332 15 N -0.365 5.365 16 C 0.118 3.882 17 C -0.144 4.144 18 C -0.117 4.117 19 C -0.147 4.147 20 C 0.034 3.966 21 H 0.020 0.980 22 H 0.027 0.973 23 H 0.058 0.942 24 H 0.260 0.740 25 H 0.175 0.825 26 H 0.122 0.878 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.329 0.016 -14.758 16.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.090 3.910 3 H 0.023 0.977 4 C -0.553 4.553 5 H 0.063 0.937 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.777 3.223 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.197 1.197 12 C -0.220 4.220 13 C -0.142 4.142 14 N -0.154 5.154 15 N -0.149 5.149 16 C 0.017 3.983 17 C -0.182 4.182 18 C -0.155 4.155 19 C -0.186 4.186 20 C -0.111 4.111 21 H 0.039 0.961 22 H 0.046 0.954 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.192 0.808 26 H 0.140 0.860 27 H 0.106 0.894 28 H 0.111 0.889 29 H 0.125 0.875 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 6.566 -0.752 -15.648 16.986 hybrid contribution -0.161 0.160 1.879 1.893 sum 6.405 -0.592 -13.768 15.197 Atomic orbital electron populations 1.21577 0.97943 0.98825 0.99224 1.17014 0.92369 0.93225 0.88377 0.97732 1.21407 1.30451 1.11997 0.91409 0.93689 1.25664 0.95435 0.95775 1.01528 1.70011 1.37831 1.24181 1.23788 0.85673 0.78057 0.79084 0.79522 1.20361 1.20787 1.19696 1.20673 1.05994 0.95415 0.99880 1.23713 0.99944 0.96800 0.93789 1.77068 1.15142 1.07662 1.15500 1.48758 1.40071 1.07275 1.18802 1.23368 0.93029 1.00681 0.81191 1.23463 1.00507 0.95360 0.98880 1.22703 0.95972 1.01847 0.94968 1.23416 0.98419 0.99899 0.96855 1.22363 1.01400 0.96557 0.90791 0.96074 0.95420 0.92366 0.93050 0.80770 0.86043 0.89390 0.88907 0.87496 0.89119 0.89851 0.90855 0.79873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 8.86 71.98 0.64 -5.25 16 2 C 0.11 5.68 2.66 -12.28 -0.03 5.65 16 3 H 0.00 0.25 8.11 -2.39 -0.02 0.23 16 4 C -0.51 -28.87 8.42 25.60 0.22 -28.66 16 5 H 0.04 2.55 7.73 -2.91 -0.02 2.53 16 6 C 0.01 0.79 5.30 84.65 0.45 1.23 16 7 N -0.92 -53.17 11.32 21.45 0.24 -52.92 16 8 Si 0.95 44.30 29.54 68.60 2.03 46.32 16 9 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 12 C -0.21 -9.41 4.74 -20.14 -0.10 -9.51 16 13 C 0.04 1.82 11.52 85.24 0.98 2.80 16 14 N -0.33 -13.43 12.58 -57.02 -0.72 -14.14 16 15 N -0.37 -12.70 3.81 -325.01 -1.24 -13.94 16 16 C 0.12 2.86 5.02 45.51 0.23 3.08 16 17 C -0.14 -2.60 7.46 31.18 0.23 -2.37 16 18 C -0.12 -1.57 8.09 31.18 0.25 -1.32 16 19 C -0.15 -2.89 7.88 31.12 0.25 -2.64 16 20 C 0.03 1.28 10.58 83.54 0.88 2.16 16 21 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.03 1.31 8.02 -2.39 -0.02 1.30 16 23 H 0.06 3.18 6.07 -2.39 -0.01 3.16 16 24 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 25 H 0.18 7.25 8.06 -2.91 -0.02 7.23 16 26 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 27 H 0.09 1.73 6.32 -2.39 -0.02 1.72 16 28 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.18 5.91 6.69 -2.91 -0.02 5.89 16 Total: -1.00 -64.95 275.40 5.39 -59.56 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 1.08 Total: 9.95 kcal Atomic # 6 Polarization: -38.82 SS G_CDS: 4.00 Total: -34.82 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -1.71 Total: -81.01 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -64.95 5.39 -59.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261217523.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.281 kcal (2) G-P(sol) polarization free energy of solvation -64.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds