Wall clock time and date at job start Mon Mar 30 2020 03:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46504 * 109.46809 * 2 1 4 4 C 1.34955 * 126.03918 * 125.00357 * 3 2 1 5 5 C 1.35308 * 107.74634 * 180.02562 * 4 3 2 6 6 C 1.50702 * 126.04163 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.46713 * 0.02562 * 6 5 4 8 8 C 1.50697 * 109.47257 * 240.00531 * 6 5 4 9 9 H 1.07994 * 120.00109 * 359.97438 * 8 6 5 10 10 C 1.37877 * 119.99699 * 179.97438 * 8 6 5 11 11 N 1.31518 * 120.00127 * 0.02562 * 10 8 6 12 12 Si 1.86805 * 119.99831 * 179.97438 * 10 8 6 13 13 H 1.48492 * 109.46914 * 60.00222 * 12 10 8 14 14 H 1.48501 * 109.46863 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47073 * 299.99953 * 12 10 8 16 16 C 1.53002 * 109.47317 * 120.00037 * 6 5 4 17 17 C 1.53002 * 117.49773 * 300.00698 * 16 6 5 18 18 C 1.53000 * 60.02940 * 252.51785 * 17 16 6 19 19 C 1.39869 * 107.92507 * 0.26304 * 5 4 3 20 20 N 1.30844 * 108.20009 * 359.55557 * 19 5 4 21 21 H 1.09003 * 109.47148 * 299.99629 * 1 2 3 22 22 H 1.08999 * 109.47471 * 60.00289 * 1 2 3 23 23 H 1.09008 * 109.46967 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47148 * 240.00371 * 2 1 3 25 25 H 1.08999 * 109.47471 * 119.99711 * 2 1 3 26 26 H 1.08002 * 126.12005 * 359.97438 * 4 3 2 27 27 H 0.96999 * 119.99950 * 180.02562 * 11 10 8 28 28 H 1.09000 * 115.55766 * 85.69014 * 16 6 5 29 29 H 1.09002 * 117.49918 * 145.01819 * 17 16 6 30 30 H 1.09002 * 117.49754 * 0.02562 * 17 16 6 31 31 H 1.09008 * 117.49673 * 107.47884 * 18 17 16 32 32 H 1.08999 * 117.49942 * 252.47315 * 18 17 16 33 33 H 1.07994 * 125.90305 * 179.73532 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8730 1.9213 0.8939 5 6 3.0710 3.2139 0.5463 6 6 3.9537 4.2004 1.2665 7 1 4.4188 3.7135 2.1237 8 6 3.1232 5.3655 1.7396 9 1 2.0624 5.3894 1.5386 10 6 3.7177 6.4009 2.4292 11 7 5.0097 6.3720 2.6736 12 14 2.6884 7.8454 3.0151 13 1 1.6328 7.3585 3.9390 14 1 3.5582 8.8175 3.7248 15 1 2.0561 8.5089 1.8467 16 6 5.0407 4.7024 0.3139 17 6 5.9950 3.6638 -0.2792 18 6 6.4915 4.6316 0.7969 19 6 2.3066 3.4745 -0.5956 20 7 1.6797 2.3751 -0.9275 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.3184 1.4128 1.7362 27 1 5.4278 7.1002 3.1591 28 1 4.7605 5.5463 -0.3165 29 1 6.3426 3.8245 -1.2997 30 1 5.8481 2.6229 0.0090 31 1 6.6710 4.2273 1.7932 32 1 7.1661 5.4286 0.4844 33 1 2.2466 4.4192 -1.1155 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261220194.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:22 Heat of formation + Delta-G solvation = 94.049171 kcal Electronic energy + Delta-G solvation = -14829.345563 eV Core-core repulsion = 12471.507732 eV Total energy + Delta-G solvation = -2357.837831 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.39212 -36.44955 -33.99112 -32.52290 -30.19883 -29.52778 -26.54894 -23.51643 -22.88542 -21.12297 -20.19316 -19.89057 -18.52575 -16.43674 -16.02242 -14.97499 -14.49881 -14.08067 -13.70202 -13.50851 -13.01165 -12.49694 -12.28929 -11.99996 -11.84599 -11.60528 -11.25613 -10.87243 -10.72428 -10.40666 -10.23833 -9.81014 -9.73564 -9.54180 -8.67379 -8.62955 -8.58357 -8.19395 -7.32702 -5.89540 -3.95350 2.65510 3.15726 3.37266 3.41747 3.44946 3.82251 4.52294 4.81216 5.11925 5.23455 5.27955 5.39542 5.50847 5.70247 5.72359 5.95804 6.08625 6.16785 6.27994 6.45066 6.59509 6.62160 6.67187 6.97124 7.10340 7.25167 7.37108 7.55439 7.63288 7.83061 7.90734 8.06436 8.46958 8.57532 9.07291 9.68306 11.15942 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.028213 B = 0.008999 C = 0.007396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.215689 B = 3110.729701 C = 3784.729617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 N -0.389 5.389 4 C 0.016 3.984 5 C -0.166 4.166 6 C 0.141 3.859 7 H 0.030 0.970 8 C -0.509 4.509 9 H 0.055 0.945 10 C 0.066 3.934 11 N -0.877 5.877 12 Si 0.886 3.114 13 H -0.279 1.279 14 H -0.289 1.289 15 H -0.278 1.278 16 C -0.076 4.076 17 C -0.224 4.224 18 C -0.140 4.140 19 C 0.059 3.941 20 N -0.317 5.317 21 H 0.059 0.941 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.160 0.840 27 H 0.258 0.742 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.890 -9.498 -3.456 10.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.016 3.984 3 N -0.175 5.175 4 C -0.126 4.126 5 C -0.176 4.176 6 C 0.121 3.879 7 H 0.048 0.952 8 C -0.547 4.547 9 H 0.073 0.927 10 C -0.136 4.136 11 N -0.515 5.515 12 Si 0.714 3.286 13 H -0.205 1.205 14 H -0.215 1.215 15 H -0.204 1.204 16 C -0.095 4.095 17 C -0.261 4.261 18 C -0.177 4.177 19 C -0.127 4.127 20 N -0.139 5.139 21 H 0.078 0.922 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.091 0.909 25 H 0.105 0.895 26 H 0.177 0.823 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -3.581 -10.096 -4.175 11.497 hybrid contribution 0.124 1.274 1.007 1.628 sum -3.456 -8.822 -3.168 9.991 Atomic orbital electron populations 1.22042 0.94612 1.01950 1.03508 1.21413 0.95420 0.78895 1.02655 1.48371 1.37380 1.09415 1.22329 1.22220 0.97908 0.95471 0.97036 1.20696 1.04228 0.94019 0.98677 1.16821 0.89530 0.90822 0.90729 0.95184 1.21014 0.94343 1.03914 1.35461 0.92697 1.24951 0.94820 0.97938 0.95917 1.70018 1.09155 1.32173 1.40146 0.86767 0.80240 0.82670 0.78919 1.20518 1.21494 1.20393 1.22192 0.91146 0.96685 0.99440 1.22995 1.09771 0.96216 0.97150 1.22439 0.98833 0.99582 0.96835 1.23682 0.95634 0.96415 0.96972 1.77107 1.24973 0.97348 1.14462 0.92193 0.91327 0.91507 0.90879 0.89491 0.82282 0.93242 0.90133 0.91413 0.90787 0.89781 0.91374 0.80835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 10.10 37.15 0.38 -1.48 16 2 C 0.14 1.72 7.23 -4.04 -0.03 1.69 16 3 N -0.39 -6.83 3.68 -61.37 -0.23 -7.05 16 4 C 0.02 0.31 11.34 -17.22 -0.20 0.11 16 5 C -0.17 -3.58 4.39 -105.06 -0.46 -4.04 16 6 C 0.14 3.41 2.29 -92.92 -0.21 3.20 16 7 H 0.03 0.79 7.86 -51.93 -0.41 0.38 16 8 C -0.51 -13.64 8.39 -34.44 -0.29 -13.93 16 9 H 0.05 1.49 7.72 -52.49 -0.41 1.09 16 10 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 11 N -0.88 -24.19 11.44 55.43 0.63 -23.55 16 12 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 C -0.08 -1.76 4.09 -90.58 -0.37 -2.13 16 17 C -0.22 -4.55 9.87 -26.73 -0.26 -4.81 16 18 C -0.14 -3.08 9.06 -26.70 -0.24 -3.33 16 19 C 0.06 1.22 11.61 -17.36 -0.20 1.02 16 20 N -0.32 -6.29 12.42 30.62 0.38 -5.91 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.09 0.87 8.07 -51.93 -0.42 0.45 16 26 H 0.16 2.59 8.06 -52.49 -0.42 2.17 16 27 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.08 1.97 8.11 -51.93 -0.42 1.55 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.08 1.94 8.05 -51.92 -0.42 1.52 16 32 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.17 3.43 8.06 -52.49 -0.42 3.01 16 LS Contribution 283.30 15.07 4.27 4.27 Total: -1.00 -29.14 283.30 -6.96 -36.10 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -5.01 Total: 2.03 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -1.98 Total: -22.00 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.79 Total: -36.51 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.14 -6.96 -36.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261220194.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.150 kcal (2) G-P(sol) polarization free energy of solvation -29.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds