Wall clock time and date at job start Mon Mar 30 2020 03:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46504 * 109.46809 * 2 1 4 4 C 1.34955 * 126.03918 * 125.00357 * 3 2 1 5 5 C 1.35308 * 107.74634 * 180.02562 * 4 3 2 6 6 C 1.50702 * 126.04163 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.46713 * 0.02562 * 6 5 4 8 8 C 1.50697 * 109.47257 * 240.00531 * 6 5 4 9 9 H 1.07994 * 120.00109 * 359.97438 * 8 6 5 10 10 C 1.37877 * 119.99699 * 179.97438 * 8 6 5 11 11 N 1.31518 * 120.00127 * 0.02562 * 10 8 6 12 12 Si 1.86805 * 119.99831 * 179.97438 * 10 8 6 13 13 H 1.48492 * 109.46914 * 60.00222 * 12 10 8 14 14 H 1.48501 * 109.46863 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47073 * 299.99953 * 12 10 8 16 16 C 1.53002 * 109.47317 * 120.00037 * 6 5 4 17 17 C 1.53002 * 117.49773 * 300.00698 * 16 6 5 18 18 C 1.53000 * 60.02940 * 252.51785 * 17 16 6 19 19 C 1.39869 * 107.92507 * 0.26304 * 5 4 3 20 20 N 1.30844 * 108.20009 * 359.55557 * 19 5 4 21 21 H 1.09003 * 109.47148 * 299.99629 * 1 2 3 22 22 H 1.08999 * 109.47471 * 60.00289 * 1 2 3 23 23 H 1.09008 * 109.46967 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47148 * 240.00371 * 2 1 3 25 25 H 1.08999 * 109.47471 * 119.99711 * 2 1 3 26 26 H 1.08002 * 126.12005 * 359.97438 * 4 3 2 27 27 H 0.96999 * 119.99950 * 180.02562 * 11 10 8 28 28 H 1.09000 * 115.55766 * 85.69014 * 16 6 5 29 29 H 1.09002 * 117.49918 * 145.01819 * 17 16 6 30 30 H 1.09002 * 117.49754 * 0.02562 * 17 16 6 31 31 H 1.09008 * 117.49673 * 107.47884 * 18 17 16 32 32 H 1.08999 * 117.49942 * 252.47315 * 18 17 16 33 33 H 1.07994 * 125.90305 * 179.73532 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8730 1.9213 0.8939 5 6 3.0710 3.2139 0.5463 6 6 3.9537 4.2004 1.2665 7 1 4.4188 3.7135 2.1237 8 6 3.1232 5.3655 1.7396 9 1 2.0624 5.3894 1.5386 10 6 3.7177 6.4009 2.4292 11 7 5.0097 6.3720 2.6736 12 14 2.6884 7.8454 3.0151 13 1 1.6328 7.3585 3.9390 14 1 3.5582 8.8175 3.7248 15 1 2.0561 8.5089 1.8467 16 6 5.0407 4.7024 0.3139 17 6 5.9950 3.6638 -0.2792 18 6 6.4915 4.6316 0.7969 19 6 2.3066 3.4745 -0.5956 20 7 1.6797 2.3751 -0.9275 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.3184 1.4128 1.7362 27 1 5.4278 7.1002 3.1591 28 1 4.7605 5.5463 -0.3165 29 1 6.3426 3.8245 -1.2997 30 1 5.8481 2.6229 0.0090 31 1 6.6710 4.2273 1.7932 32 1 7.1661 5.4286 0.4844 33 1 2.2466 4.4192 -1.1155 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261220194.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:21 Heat of formation + Delta-G solvation = 78.545181 kcal Electronic energy + Delta-G solvation = -14830.017866 eV Core-core repulsion = 12471.507732 eV Total energy + Delta-G solvation = -2358.510134 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.88861 -38.20963 -35.21508 -34.48728 -31.91253 -30.86566 -28.25696 -25.14059 -24.35984 -22.83085 -21.82042 -21.34512 -20.19953 -18.29368 -17.56307 -16.45270 -16.17901 -15.80174 -15.06760 -14.90779 -14.66443 -14.16281 -13.93338 -13.35755 -13.14627 -12.89854 -12.79545 -12.69133 -12.28107 -12.11562 -11.98843 -11.66372 -11.56441 -11.25837 -10.57033 -10.45040 -10.11573 -10.06133 -8.90658 -7.94778 -6.06617 1.16558 1.46074 1.46913 1.53698 1.88067 2.19040 2.53982 3.30450 3.48393 3.77818 4.15785 4.20924 4.30977 4.36404 4.46211 4.57558 4.65837 4.79605 4.89270 4.96275 4.98170 5.09493 5.23909 5.29151 5.40045 5.49826 5.58442 5.73688 5.90084 5.98153 6.12142 6.39007 6.54627 6.99310 7.01642 7.59072 9.08103 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.028213 B = 0.008999 C = 0.007396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.215689 B = 3110.729701 C = 3784.729617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.124 3.876 3 N -0.378 5.378 4 C 0.028 3.972 5 C -0.199 4.199 6 C 0.149 3.851 7 H 0.004 0.996 8 C -0.523 4.523 9 H 0.042 0.958 10 C 0.024 3.976 11 N -0.896 5.896 12 Si 0.940 3.060 13 H -0.278 1.278 14 H -0.285 1.285 15 H -0.277 1.277 16 C -0.094 4.094 17 C -0.190 4.190 18 C -0.143 4.143 19 C 0.044 3.956 20 N -0.327 5.327 21 H 0.046 0.954 22 H 0.049 0.951 23 H 0.103 0.897 24 H 0.091 0.909 25 H 0.119 0.881 26 H 0.187 0.813 27 H 0.257 0.743 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.279 -11.156 -3.661 12.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.004 3.996 3 N -0.163 5.163 4 C -0.117 4.117 5 C -0.210 4.210 6 C 0.130 3.870 7 H 0.022 0.978 8 C -0.561 4.561 9 H 0.061 0.939 10 C -0.176 4.176 11 N -0.535 5.535 12 Si 0.767 3.233 13 H -0.204 1.204 14 H -0.211 1.211 15 H -0.202 1.202 16 C -0.113 4.113 17 C -0.227 4.227 18 C -0.180 4.180 19 C -0.141 4.141 20 N -0.150 5.150 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.121 0.879 24 H 0.109 0.891 25 H 0.137 0.863 26 H 0.204 0.796 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.990 -11.772 -4.398 13.185 hybrid contribution 0.202 1.673 1.070 1.996 sum -3.788 -10.099 -3.328 11.287 Atomic orbital electron populations 1.22005 0.93792 1.03839 1.01870 1.21962 0.96149 0.76318 1.05143 1.48803 1.36027 1.10638 1.20859 1.22541 0.97103 0.94784 0.97258 1.20521 1.05682 0.94981 0.99783 1.16547 0.89786 0.90465 0.90244 0.97807 1.21282 0.94117 1.05168 1.35576 0.93922 1.25558 0.95811 1.00014 0.96222 1.70120 1.10091 1.32646 1.40600 0.85906 0.78919 0.80097 0.78373 1.20398 1.21094 1.20222 1.21993 0.91547 0.97634 1.00144 1.22966 1.06472 0.95734 0.97504 1.22363 0.98203 1.00549 0.96915 1.23657 0.96266 0.96933 0.97238 1.77052 1.25033 0.97582 1.15339 0.93515 0.93215 0.87872 0.89120 0.86287 0.79640 0.93408 0.92059 0.89364 0.89982 0.91191 0.91039 0.81142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 10.10 71.98 0.73 -2.40 16 2 C 0.12 2.64 7.23 86.38 0.62 3.27 16 3 N -0.38 -12.42 3.68 -348.06 -1.28 -13.70 16 4 C 0.03 1.01 11.34 83.54 0.95 1.96 16 5 C -0.20 -8.55 4.39 -20.15 -0.09 -8.64 16 6 C 0.15 7.36 2.29 -12.29 -0.03 7.33 16 7 H 0.00 0.21 7.86 -2.39 -0.02 0.19 16 8 C -0.52 -28.62 8.39 25.60 0.21 -28.41 16 9 H 0.04 2.38 7.72 -2.91 -0.02 2.35 16 10 C 0.02 1.33 5.30 84.65 0.45 1.78 16 11 N -0.90 -50.12 11.44 21.45 0.25 -49.87 16 12 Si 0.94 43.79 29.54 68.60 2.03 45.82 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 14 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 16 C -0.09 -4.42 4.09 -10.77 -0.04 -4.46 16 17 C -0.19 -7.45 9.87 30.60 0.30 -7.15 16 18 C -0.14 -6.31 9.06 30.62 0.28 -6.04 16 19 C 0.04 1.83 11.61 85.23 0.99 2.82 16 20 N -0.33 -12.66 12.42 -57.02 -0.71 -13.37 16 21 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 24 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.12 1.83 8.07 -2.39 -0.02 1.81 16 26 H 0.19 5.56 8.06 -2.91 -0.02 5.53 16 27 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 28 H 0.06 3.07 8.11 -2.39 -0.02 3.05 16 29 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 30 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 31 H 0.07 3.27 8.05 -2.38 -0.02 3.25 16 32 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.17 6.96 8.06 -2.91 -0.02 6.93 16 Total: -1.00 -62.66 283.30 5.72 -56.94 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 1.07 Total: 14.13 kcal Atomic # 6 Polarization: -44.32 SS G_CDS: 4.37 Total: -39.95 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: -1.74 Total: -76.94 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -62.66 5.72 -56.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261220194.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.480 kcal (2) G-P(sol) polarization free energy of solvation -62.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds