Wall clock time and date at job start Mon Mar 30 2020 02:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47249 * 2 1 4 4 N 1.46502 * 109.47469 * 120.00199 * 2 1 3 5 5 C 1.34990 * 126.41486 * 300.02602 * 4 2 1 6 6 N 1.30414 * 108.70329 * 179.97438 * 5 4 2 7 7 C 1.34490 * 109.30247 * 0.02562 * 6 5 4 8 8 C 1.34432 * 107.85871 * 359.97438 * 7 6 5 9 9 C 1.51182 * 110.53313 * 179.97438 * 8 7 6 10 10 C 1.54480 * 104.93616 * 16.82863 * 9 8 7 11 11 C 1.51369 * 141.86465 * 179.97438 * 7 6 5 12 12 H 1.08996 * 110.42666 * 282.09611 * 11 7 6 13 13 C 1.50700 * 110.33390 * 44.29177 * 11 7 6 14 14 H 1.08002 * 119.99770 * 115.57440 * 13 11 7 15 15 C 1.37871 * 120.00083 * 295.57119 * 13 11 7 16 16 N 1.31514 * 120.00147 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 120.00278 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47228 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.46793 * 300.00001 * 17 15 13 20 20 H 1.48500 * 109.47000 * 60.00094 * 17 15 13 21 21 H 1.09000 * 109.47290 * 299.99804 * 1 2 3 22 22 H 1.09001 * 109.47277 * 60.00076 * 1 2 3 23 23 H 1.09000 * 109.47431 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47290 * 240.00196 * 2 1 3 25 25 H 1.09001 * 109.46919 * 300.00143 * 3 2 1 26 26 H 1.09000 * 109.46814 * 59.99905 * 3 2 1 27 27 H 1.09000 * 109.47507 * 179.97438 * 3 2 1 28 28 H 1.08003 * 125.65022 * 359.97438 * 5 4 2 29 29 H 1.09006 * 110.34172 * 257.97332 * 9 8 7 30 30 H 1.08995 * 110.35288 * 135.69574 * 9 8 7 31 31 H 1.09005 * 110.94967 * 216.32129 * 10 9 8 32 32 H 1.09004 * 110.94430 * 92.62442 * 10 9 8 33 33 H 0.97005 * 119.99661 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7730 -0.3445 2.4776 6 7 2.3739 -1.1949 3.2629 7 6 3.0208 -2.1082 2.5171 8 6 2.8094 -1.8089 1.2237 9 6 3.5137 -2.8021 0.3276 10 6 3.8357 -4.0049 1.2420 11 6 3.8926 -3.3400 2.6348 12 1 4.9172 -3.0590 2.8781 13 6 3.3431 -4.2723 3.6835 14 1 2.9825 -5.2504 3.4011 15 6 3.3008 -3.8767 5.0036 16 7 3.7395 -2.6855 5.3475 17 14 2.6203 -5.0326 6.3038 18 1 2.6853 -4.3750 7.6336 19 1 1.2084 -5.3624 5.9826 20 1 3.4266 -6.2793 6.3286 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.1777 0.4972 2.7994 29 1 4.4330 -2.3701 -0.0681 30 1 2.8575 -3.1100 -0.4865 31 1 4.7975 -4.4465 0.9809 32 1 3.0417 -4.7505 1.1991 33 1 4.0932 -2.0854 4.6724 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261221656.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:07 Heat of formation + Delta-G solvation = 63.054414 kcal Electronic energy + Delta-G solvation = -15223.886039 eV Core-core repulsion = 12864.704174 eV Total energy + Delta-G solvation = -2359.181864 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.42554 -36.47398 -34.83439 -32.37390 -30.07154 -27.38113 -27.12872 -26.60280 -23.16106 -22.50265 -20.82725 -18.86537 -18.64447 -16.51803 -16.08508 -14.94549 -14.50521 -13.84727 -13.71444 -13.54613 -12.90090 -12.72013 -12.67198 -12.31161 -12.21200 -11.47717 -11.39693 -11.34004 -11.10456 -10.80663 -10.57042 -10.15358 -9.98398 -9.64871 -8.68792 -8.55334 -8.31953 -8.04239 -7.03606 -6.03050 -3.75254 2.88854 3.28221 3.58107 3.62625 3.80023 4.32421 4.61307 4.77529 4.92387 4.95958 5.08606 5.28211 5.38728 5.57857 5.59963 5.64774 5.72569 5.79706 5.86242 5.94507 6.05706 6.08309 6.28555 6.61961 6.70930 6.97374 7.03488 7.32003 7.60388 7.75851 8.21246 8.42419 8.72234 9.19945 9.26724 9.99951 11.39396 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.038753 B = 0.008964 C = 0.008088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.345855 B = 3122.746620 C = 3461.131582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.130 3.870 3 C -0.159 4.159 4 N -0.446 5.446 5 C 0.158 3.842 6 N -0.449 5.449 7 C 0.054 3.946 8 C -0.114 4.114 9 C -0.020 4.020 10 C -0.100 4.100 11 C 0.103 3.897 12 H 0.030 0.970 13 C -0.607 4.607 14 H 0.046 0.954 15 C 0.027 3.973 16 N -0.881 5.881 17 Si 1.065 2.935 18 H -0.284 1.284 19 H -0.292 1.292 20 H -0.291 1.291 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.190 0.810 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.091 5.929 -12.468 14.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.025 3.975 3 C -0.217 4.217 4 N -0.133 5.133 5 C -0.122 4.122 6 N -0.166 5.166 7 C -0.076 4.076 8 C -0.225 4.225 9 C -0.058 4.058 10 C -0.139 4.139 11 C 0.083 3.917 12 H 0.047 0.953 13 C -0.645 4.645 14 H 0.065 0.935 15 C -0.182 4.182 16 N -0.514 5.514 17 Si 0.895 3.105 18 H -0.210 1.210 19 H -0.219 1.219 20 H -0.218 1.218 21 H 0.082 0.918 22 H 0.088 0.912 23 H 0.081 0.919 24 H 0.108 0.892 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.207 0.793 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.457 5.913 -10.077 12.505 hybrid contribution -0.051 0.405 -2.592 2.624 sum -4.508 6.319 -12.669 14.858 Atomic orbital electron populations 1.22150 0.94002 1.02994 1.02658 1.21235 0.94892 0.93611 0.87717 1.22147 1.02062 0.94843 1.02688 1.44822 1.39723 1.22061 1.06702 1.24798 1.06142 1.02893 0.78411 1.69955 1.10259 1.03671 1.32675 1.22529 0.99999 0.97094 0.87965 1.21729 1.05536 0.94531 1.00745 1.20371 0.96886 0.92882 0.95691 1.22348 1.00517 0.95554 0.95481 1.17932 0.92973 0.88113 0.92683 0.95268 1.21741 1.47665 1.01439 0.93635 0.93548 1.25595 0.95653 0.98647 0.98308 1.70567 1.35520 1.06640 1.38670 0.83624 0.75943 0.74768 0.76184 1.20993 1.21937 1.21814 0.91769 0.91180 0.91898 0.89242 0.91172 0.91761 0.91956 0.79340 0.91956 0.92987 0.91794 0.91506 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.24 37.15 0.34 -1.43 16 2 C 0.13 1.69 3.59 -67.93 -0.24 1.45 16 3 C -0.16 -1.72 9.24 37.16 0.34 -1.38 16 4 N -0.45 -8.27 2.62 -106.80 -0.28 -8.55 16 5 C 0.16 3.26 11.55 -90.49 -1.05 2.21 16 6 N -0.45 -11.87 10.11 -10.67 -0.11 -11.98 16 7 C 0.05 1.42 6.06 -82.44 -0.50 0.92 16 8 C -0.11 -2.48 7.60 -81.39 -0.62 -3.10 16 9 C -0.02 -0.36 6.79 -26.87 -0.18 -0.55 16 10 C -0.10 -2.12 6.63 -25.20 -0.17 -2.29 16 11 C 0.10 2.74 2.45 -91.84 -0.22 2.51 16 12 H 0.03 0.83 7.95 -51.93 -0.41 0.42 16 13 C -0.61 -18.02 8.51 -34.44 -0.29 -18.31 16 14 H 0.05 1.35 7.60 -52.49 -0.40 0.96 16 15 C 0.03 0.82 5.34 -17.82 -0.10 0.72 16 16 N -0.88 -28.29 13.10 55.43 0.73 -27.57 16 17 Si 1.07 26.91 29.90 -169.99 -5.08 21.82 16 18 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H 0.06 0.71 7.95 -51.93 -0.41 0.29 16 22 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.09 1.10 8.08 -51.93 -0.42 0.68 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.69 7.95 -51.93 -0.41 0.28 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.19 3.11 8.06 -52.48 -0.42 2.69 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.07 1.43 7.77 -51.93 -0.40 1.02 16 33 H 0.28 9.17 5.74 -40.82 -0.23 8.94 16 LS Contribution 272.14 15.07 4.10 4.10 Total: -1.00 -35.25 272.14 -8.20 -43.45 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -4.87 Total: -2.04 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -2.68 Total: -19.23 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: 0.34 Total: -48.10 kcal Atomic # 14 Polarization: 26.91 SS G_CDS: -5.08 Total: 21.82 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -35.25 -8.20 -43.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261221656.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.501 kcal (2) G-P(sol) polarization free energy of solvation -35.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds