Wall clock time and date at job start Mon Mar 30 2020 02:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47249 * 2 1 4 4 N 1.46502 * 109.47469 * 120.00199 * 2 1 3 5 5 C 1.34990 * 126.41486 * 300.02602 * 4 2 1 6 6 N 1.30414 * 108.70329 * 179.97438 * 5 4 2 7 7 C 1.34490 * 109.30247 * 0.02562 * 6 5 4 8 8 C 1.34432 * 107.85871 * 359.97438 * 7 6 5 9 9 C 1.51182 * 110.53313 * 179.97438 * 8 7 6 10 10 C 1.54480 * 104.93616 * 16.82863 * 9 8 7 11 11 C 1.51369 * 141.86465 * 179.97438 * 7 6 5 12 12 H 1.08996 * 110.42666 * 282.09611 * 11 7 6 13 13 C 1.50700 * 110.33390 * 44.29177 * 11 7 6 14 14 H 1.08002 * 119.99770 * 115.57440 * 13 11 7 15 15 C 1.37871 * 120.00083 * 295.57119 * 13 11 7 16 16 N 1.31514 * 120.00147 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 120.00278 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47228 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.46793 * 300.00001 * 17 15 13 20 20 H 1.48500 * 109.47000 * 60.00094 * 17 15 13 21 21 H 1.09000 * 109.47290 * 299.99804 * 1 2 3 22 22 H 1.09001 * 109.47277 * 60.00076 * 1 2 3 23 23 H 1.09000 * 109.47431 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47290 * 240.00196 * 2 1 3 25 25 H 1.09001 * 109.46919 * 300.00143 * 3 2 1 26 26 H 1.09000 * 109.46814 * 59.99905 * 3 2 1 27 27 H 1.09000 * 109.47507 * 179.97438 * 3 2 1 28 28 H 1.08003 * 125.65022 * 359.97438 * 5 4 2 29 29 H 1.09006 * 110.34172 * 257.97332 * 9 8 7 30 30 H 1.08995 * 110.35288 * 135.69574 * 9 8 7 31 31 H 1.09005 * 110.94967 * 216.32129 * 10 9 8 32 32 H 1.09004 * 110.94430 * 92.62442 * 10 9 8 33 33 H 0.97005 * 119.99661 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7730 -0.3445 2.4776 6 7 2.3739 -1.1949 3.2629 7 6 3.0208 -2.1082 2.5171 8 6 2.8094 -1.8089 1.2237 9 6 3.5137 -2.8021 0.3276 10 6 3.8357 -4.0049 1.2420 11 6 3.8926 -3.3400 2.6348 12 1 4.9172 -3.0590 2.8781 13 6 3.3431 -4.2723 3.6835 14 1 2.9825 -5.2504 3.4011 15 6 3.3008 -3.8767 5.0036 16 7 3.7395 -2.6855 5.3475 17 14 2.6203 -5.0326 6.3038 18 1 2.6853 -4.3750 7.6336 19 1 1.2084 -5.3624 5.9826 20 1 3.4266 -6.2793 6.3286 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.1777 0.4972 2.7994 29 1 4.4330 -2.3701 -0.0681 30 1 2.8575 -3.1100 -0.4865 31 1 4.7975 -4.4465 0.9809 32 1 3.0417 -4.7505 1.1991 33 1 4.0932 -2.0854 4.6724 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261221656.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:07 Heat of formation + Delta-G solvation = 41.498896 kcal Electronic energy + Delta-G solvation = -15224.820756 eV Core-core repulsion = 12864.704174 eV Total energy + Delta-G solvation = -2360.116582 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.05107 -38.00665 -36.25917 -34.48561 -31.57716 -29.00313 -28.31222 -28.21774 -25.29497 -23.79693 -22.43926 -20.62042 -20.20695 -18.46938 -17.55064 -16.51564 -15.68808 -15.58566 -15.35057 -15.12415 -14.67421 -14.02490 -13.98149 -13.83619 -13.28260 -13.13426 -12.86786 -12.65185 -12.45282 -12.37009 -12.12698 -11.98720 -11.80768 -11.57896 -10.62393 -10.41238 -10.18735 -10.14333 -8.77426 -8.40733 -6.12013 1.29137 1.51526 1.62567 1.80146 1.88482 2.51064 2.69065 3.41453 3.53967 3.66172 3.81690 3.97965 4.10772 4.14376 4.31774 4.47008 4.62470 4.63764 4.72379 4.79139 4.86162 4.93288 5.00283 5.12156 5.21023 5.27489 5.33842 5.59042 5.71859 5.99754 6.16868 6.47530 6.67483 6.83774 7.56491 7.72115 9.01119 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.038753 B = 0.008964 C = 0.008088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.345855 B = 3122.746620 C = 3461.131582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.120 3.880 3 C -0.154 4.154 4 N -0.434 5.434 5 C 0.164 3.836 6 N -0.517 5.517 7 C -0.010 4.010 8 C -0.096 4.096 9 C -0.010 4.010 10 C -0.093 4.093 11 C 0.087 3.913 12 H -0.008 1.008 13 C -0.621 4.621 14 H 0.042 0.958 15 C -0.028 4.028 16 N -0.910 5.910 17 Si 1.112 2.888 18 H -0.287 1.287 19 H -0.282 1.282 20 H -0.267 1.267 21 H 0.063 0.937 22 H 0.106 0.894 23 H 0.045 0.955 24 H 0.104 0.896 25 H 0.106 0.894 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.225 0.775 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.385 6.458 -15.007 17.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.018 3.982 3 C -0.211 4.211 4 N -0.119 5.119 5 C -0.117 4.117 6 N -0.235 5.235 7 C -0.139 4.139 8 C -0.210 4.210 9 C -0.048 4.048 10 C -0.131 4.131 11 C 0.068 3.932 12 H 0.010 0.990 13 C -0.658 4.658 14 H 0.061 0.939 15 C -0.230 4.230 16 N -0.544 5.544 17 Si 0.935 3.065 18 H -0.213 1.213 19 H -0.208 1.208 20 H -0.192 1.192 21 H 0.082 0.918 22 H 0.125 0.875 23 H 0.064 0.936 24 H 0.122 0.878 25 H 0.124 0.876 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.241 0.759 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.755 6.451 -12.674 15.341 hybrid contribution 0.340 0.313 -1.880 1.936 sum -5.415 6.764 -14.554 16.937 Atomic orbital electron populations 1.22139 0.92176 1.02430 1.04486 1.21754 0.96309 0.94512 0.85612 1.22133 1.01121 0.93387 1.04486 1.45106 1.38010 1.20925 1.07859 1.25307 1.05036 1.02469 0.78937 1.69761 1.12555 1.05564 1.35608 1.22324 1.02724 0.98542 0.90334 1.22149 1.04251 0.94862 0.99781 1.20409 0.98360 0.90782 0.95259 1.22269 1.01641 0.96343 0.92895 1.17973 0.91082 0.89071 0.95114 0.99022 1.22177 1.46970 1.01798 0.94897 0.93947 1.27055 0.95462 0.99291 1.01205 1.70671 1.37921 1.07651 1.38184 0.83027 0.76131 0.73836 0.73518 1.21277 1.20847 1.19165 0.91836 0.87500 0.93626 0.87789 0.87556 0.91811 0.93400 0.75875 0.89427 0.89382 0.89569 0.92052 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.24 71.98 0.67 -2.16 16 2 C 0.12 2.68 3.59 44.99 0.16 2.84 16 3 C -0.15 -2.72 9.24 71.98 0.67 -2.06 16 4 N -0.43 -15.31 2.62 -491.82 -1.29 -16.59 16 5 C 0.16 6.69 11.55 180.30 2.08 8.77 16 6 N -0.52 -28.19 10.11 -187.67 -1.90 -30.09 16 7 C -0.01 -0.54 6.06 41.49 0.25 -0.28 16 8 C -0.10 -4.08 7.60 41.03 0.31 -3.76 16 9 C -0.01 -0.33 6.79 30.50 0.21 -0.13 16 10 C -0.09 -3.87 6.63 31.58 0.21 -3.66 16 11 C 0.09 4.82 2.45 -11.59 -0.03 4.79 16 12 H -0.01 -0.48 7.95 -2.39 -0.02 -0.50 16 13 C -0.62 -38.13 8.51 25.60 0.22 -37.91 16 14 H 0.04 2.54 7.60 -2.91 -0.02 2.52 16 15 C -0.03 -1.75 5.34 84.65 0.45 -1.30 16 16 N -0.91 -61.18 13.10 21.45 0.28 -60.90 16 17 Si 1.11 55.41 29.90 68.60 2.05 57.46 16 18 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 19 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 H 0.06 1.18 7.95 -2.39 -0.02 1.16 16 22 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.10 2.08 8.08 -2.39 -0.02 2.06 16 25 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.06 1.15 7.95 -2.39 -0.02 1.13 16 27 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.23 7.05 8.06 -2.91 -0.02 7.03 16 29 H 0.09 2.63 8.14 -2.38 -0.02 2.61 16 30 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 32 H 0.06 2.58 7.77 -2.38 -0.02 2.56 16 33 H 0.27 18.44 5.74 -92.70 -0.53 17.91 16 Total: -1.00 -82.06 272.14 5.65 -76.41 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 1.31 Total: 8.59 kcal Atomic # 6 Polarization: -40.07 SS G_CDS: 5.20 Total: -34.87 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -2.91 Total: -107.58 kcal Atomic # 14 Polarization: 55.41 SS G_CDS: 2.05 Total: 57.46 kcal Total: -82.06 5.65 -76.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261221656.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.907 kcal (2) G-P(sol) polarization free energy of solvation -82.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds