Wall clock time and date at job start Mon Mar 30 2020 03:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99996 * 2 1 4 4 C 1.39168 * 111.00242 * 123.95633 * 2 1 3 5 5 C 1.39493 * 120.86515 * 300.00320 * 4 2 1 6 6 C 1.37874 * 119.06971 * 180.02562 * 5 4 2 7 7 N 1.32014 * 120.84311 * 359.97438 * 6 5 4 8 8 C 1.31975 * 121.91110 * 0.02562 * 7 6 5 9 9 C 1.37919 * 120.83964 * 359.97438 * 8 7 6 10 10 C 1.50704 * 120.46682 * 180.02562 * 9 8 7 11 11 C 1.52994 * 109.46915 * 264.99867 * 10 9 8 12 12 C 1.50709 * 109.47268 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99414 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00168 * 180.02562 * 12 11 10 15 15 N 1.31521 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00033 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47314 * 59.99887 * 16 14 12 18 18 H 1.48504 * 109.47155 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47271 * 299.99959 * 16 14 12 20 20 H 1.09003 * 109.46883 * 296.03780 * 1 2 3 21 21 H 1.08998 * 109.47100 * 56.04168 * 1 2 3 22 22 H 1.09004 * 109.46772 * 176.04502 * 1 2 3 23 23 H 1.09000 * 109.46963 * 183.95117 * 3 2 1 24 24 H 1.08994 * 109.47438 * 303.95659 * 3 2 1 25 25 H 1.09005 * 109.46793 * 63.95436 * 3 2 1 26 26 H 1.08004 * 120.46669 * 0.02562 * 5 4 2 27 27 H 1.08002 * 119.57759 * 180.27261 * 6 5 4 28 28 H 1.08001 * 119.58498 * 180.02562 * 8 7 6 29 29 H 1.09004 * 109.47110 * 24.99805 * 10 9 8 30 30 H 1.08997 * 109.47096 * 144.99588 * 10 9 8 31 31 H 1.08995 * 109.47410 * 299.99883 * 11 10 9 32 32 H 1.09002 * 109.47436 * 60.00433 * 11 10 9 33 33 H 0.97000 * 119.99917 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9678 -0.7257 1.0777 5 6 1.6653 -0.3586 2.3890 6 6 2.1798 -1.1036 3.4288 7 7 2.9483 -2.1513 3.1953 8 6 3.2573 -2.5305 1.9696 9 6 2.7830 -1.8388 0.8748 10 6 3.1407 -2.2796 -0.5213 11 6 4.3557 -1.4887 -1.0102 12 6 4.7139 -1.9299 -2.4060 13 1 4.1326 -2.6973 -2.8955 14 6 5.7834 -1.3538 -3.0580 15 7 6.4915 -0.4196 -2.4616 16 14 6.2268 -1.9002 -4.7883 17 1 5.0777 -1.6520 -5.6956 18 1 7.4062 -1.1326 -5.2628 19 1 6.5488 -3.3499 -4.7825 20 1 -0.3633 0.4511 0.9234 21 1 -0.3633 0.5740 -0.8524 22 1 -0.3633 -1.0253 -0.0709 23 1 3.0828 1.3432 -0.0708 24 1 1.5898 1.9164 -0.8523 25 1 1.7043 1.8723 0.9234 26 1 1.0369 0.4971 2.5870 27 1 1.9473 -0.8294 4.4472 28 1 3.8890 -3.3940 1.8219 29 1 3.3775 -3.3436 -0.5169 30 1 2.2970 -2.0979 -1.1870 31 1 4.1189 -0.4248 -1.0146 32 1 5.1995 -1.6704 -0.3444 33 1 7.2437 -0.0141 -2.9205 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261225499.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:41 Heat of formation + Delta-G solvation = 13.004611 kcal Electronic energy + Delta-G solvation = -14803.645799 eV Core-core repulsion = 12442.293612 eV Total energy + Delta-G solvation = -2361.352187 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.51754 -38.20103 -36.08142 -34.11195 -31.89755 -30.80539 -28.53007 -27.10180 -26.02826 -24.07384 -22.65188 -21.73734 -18.52918 -18.05969 -17.74440 -16.52345 -16.12468 -15.96743 -15.43517 -14.97535 -14.71798 -14.48520 -14.38834 -14.07078 -13.34474 -13.24575 -12.95025 -12.82952 -12.70171 -12.67353 -12.42002 -11.72753 -11.66674 -11.22675 -10.51864 -10.41620 -10.34815 -9.75455 -9.42731 -8.15304 -6.25869 0.18481 0.27905 1.41591 1.44729 1.52374 2.43851 2.80578 2.88286 3.17668 3.57537 3.93552 4.00032 4.15880 4.23187 4.34270 4.47033 4.58193 4.61056 4.66253 4.84697 4.92795 4.94090 4.97026 5.01373 5.26305 5.31283 5.55432 5.70508 5.85274 5.90501 5.95644 6.28343 6.34971 6.90085 7.03746 7.42408 8.95977 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.032837 B = 0.007741 C = 0.006945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.479247 B = 3616.091724 C = 4030.822136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.527 5.527 3 C 0.038 3.962 4 C 0.127 3.873 5 C -0.198 4.198 6 C 0.089 3.911 7 N -0.507 5.507 8 C 0.090 3.910 9 C -0.117 4.117 10 C -0.048 4.048 11 C 0.048 3.952 12 C -0.538 4.538 13 H 0.060 0.940 14 C 0.001 3.999 15 N -0.933 5.933 16 Si 0.963 3.037 17 H -0.267 1.267 18 H -0.284 1.284 19 H -0.267 1.267 20 H 0.047 0.953 21 H 0.087 0.913 22 H 0.064 0.936 23 H 0.040 0.960 24 H 0.087 0.913 25 H 0.050 0.950 26 H 0.157 0.843 27 H 0.186 0.814 28 H 0.160 0.840 29 H 0.059 0.941 30 H 0.067 0.933 31 H -0.003 1.003 32 H -0.021 1.021 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.401 1.915 7.728 14.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.248 5.248 3 C -0.109 4.109 4 C 0.024 3.976 5 C -0.220 4.220 6 C -0.068 4.068 7 N -0.216 5.216 8 C -0.067 4.067 9 C -0.120 4.120 10 C -0.086 4.086 11 C 0.011 3.989 12 C -0.576 4.576 13 H 0.078 0.922 14 C -0.196 4.196 15 N -0.574 5.574 16 Si 0.787 3.213 17 H -0.192 1.192 18 H -0.210 1.210 19 H -0.192 1.192 20 H 0.066 0.934 21 H 0.105 0.895 22 H 0.083 0.917 23 H 0.059 0.941 24 H 0.105 0.895 25 H 0.068 0.932 26 H 0.174 0.826 27 H 0.203 0.797 28 H 0.177 0.823 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.015 0.985 32 H -0.003 1.003 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.793 1.339 7.958 14.289 hybrid contribution 0.144 0.766 -0.943 1.224 sum -11.649 2.106 7.015 13.760 Atomic orbital electron populations 1.22491 0.83907 1.02822 1.02207 1.59231 1.09909 1.14825 1.40854 1.22372 0.99814 0.86689 1.02005 1.19160 0.94909 0.93541 0.89978 1.22812 1.03380 1.02770 0.93014 1.23073 0.92759 0.90300 1.00647 1.67708 1.13835 1.16273 1.23761 1.22736 0.97405 0.99503 0.87011 1.21252 0.96959 0.95893 0.97924 1.20283 0.98774 0.98824 0.90705 1.18783 0.91329 0.94627 0.94145 1.21648 1.13462 1.21223 1.01232 0.92195 1.25933 0.96221 0.95056 1.02436 1.70108 1.20005 1.27754 1.39515 0.85543 0.77732 0.78584 0.79430 1.19186 1.20974 1.19200 0.93426 0.89459 0.91691 0.94072 0.89451 0.93204 0.82580 0.79725 0.82323 0.92214 0.91473 0.98508 1.00278 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 9.35 127.69 1.19 1.92 16 2 N -0.53 -16.65 4.17 -744.46 -3.10 -19.75 16 3 C 0.04 1.10 9.39 127.69 1.20 2.30 16 4 C 0.13 4.20 4.72 38.57 0.18 4.38 16 5 C -0.20 -5.26 8.68 22.49 0.20 -5.07 16 6 C 0.09 2.39 11.17 84.58 0.94 3.34 16 7 N -0.51 -16.72 10.36 -196.16 -2.03 -18.75 16 8 C 0.09 3.20 10.83 84.60 0.92 4.11 16 9 C -0.12 -4.47 5.17 -19.65 -0.10 -4.57 16 10 C -0.05 -2.07 5.03 29.85 0.15 -1.92 16 11 C 0.05 2.61 4.96 29.85 0.15 2.76 16 12 C -0.54 -31.10 9.11 25.60 0.23 -30.86 16 13 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 14 C 0.00 0.06 5.46 84.65 0.46 0.52 16 15 N -0.93 -57.65 13.29 21.45 0.28 -57.37 16 16 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 H 0.05 0.89 7.20 -2.39 -0.02 0.87 16 21 H 0.09 1.75 8.12 -2.39 -0.02 1.73 16 22 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 23 H 0.04 1.51 7.60 -2.39 -0.02 1.49 16 24 H 0.09 2.26 8.12 -2.39 -0.02 2.24 16 25 H 0.05 1.18 7.42 -2.38 -0.02 1.16 16 26 H 0.16 3.09 7.18 -2.91 -0.02 3.07 16 27 H 0.19 3.42 8.06 -2.91 -0.02 3.40 16 28 H 0.16 5.30 8.06 -2.91 -0.02 5.27 16 29 H 0.06 2.47 8.06 -2.38 -0.02 2.45 16 30 H 0.07 2.92 7.71 -2.39 -0.02 2.90 16 31 H 0.00 -0.20 7.60 -2.39 -0.02 -0.22 16 32 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 33 H 0.26 15.24 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -68.22 279.98 3.78 -64.45 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 1.07 Total: 7.67 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 5.52 Total: -23.08 kcal Atomic # 7 Polarization: -91.02 SS G_CDS: -4.85 Total: -95.87 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -68.22 3.78 -64.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261225499.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.454 kcal (2) G-P(sol) polarization free energy of solvation -68.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds